Rh1AG269700
MYB Family

reveille

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0006457
Physical Location & Seq
Reverse (-)
49793118 .. 49797942
4825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG269700.1

Sequence Viewer

Length: 756 bp
ATGGTGTCTGTGAACCCAAACCCAGCACCTCAGGGTTTCTACTTATTCGATCCCACCAACATGGGCCTTCCCGGCCTCAATTCCGTGCCGCCGCCCACGACGCCTTCTACGACCACCACCACCACCACGTCGTCCGCGCCCCAAAACGCCGCGTCGTTGGCCGACGATCTGAGCAAGAAGATCCGGAAACCCTATACGATTACCAAGTCCAGGGAGAGCTGGACTGAACAGGAGCACGACAAGTTTCTAGAAGCTCTCCAGCTATTTGACCGCGACTGGAAGAAGATTGAAGCATTTATTGGCTCAAAAACAGTTATTCAGATACGTAGCCATGCACAAAAGTACTTTTTGAAGGTTCAGAAAAAAGGGACAAGCGAGCATGTACCTCCTCCTCGGCCAAAGAGGAAAGCAACTCATCCATACCCACAAAAAGCTCCTAAAAGTGCTCCAGTAGCATCTCAAGCTGTTGTGCCATTTGAATCCTCATCTGCTTTGCTTGAACATGGATATGCTTACCAGCCAGACTCCTCATTTGTGCTTGGCACTCCAGTCACCAGTGCAAGTTTATCTTCCTGGAGTCATAGTTATGTGCCTCCAGTCAATGCATCACAAATAACTAAAGATGATGGAAAGCTAGCTGGTTCAACAGATGCACAGAACTCTTGCTACAGTAGTAGTAATGAAAGCAAGCCTACAACTTGGCTAATGGGTGAGACAGTTGGTCGAGCATGTCATCGCCAGCCACAGAGAGGTTAA

Protein Analysis

251

Amino Acids

27.42

Weight (kDa)

9.41

Isoelectric Point (pI)

49.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 71 - 116 4.4e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 137, 152, 273
AccIII TCCGGA 1 cut(s) 183
AciI CCGC 5 cut(s) 89, 92, 135, 150, 271
AclWI GGATC 2 cut(s) 44, 175
AcoI YGGCCR 2 cut(s) 159, 395
AcyI GRCGYC 1 cut(s) 101
AfaI GTAC 2 cut(s) 344, 384
AfiI CCNNNNNNNGG 2 cut(s) 210, 749
AgsI TTSAA 5 cut(s) 290, 352, 479, 500, 645
AhdI GACNNNNNGTC 1 cut(s) 720
AjiI CACGTC 1 cut(s) 129
AjnI CCWGG 2 cut(s) 209, 572
AjuI GAANNNNNNNTTGG 2 cut(s) 282, 314
AluBI AGCT 7 cut(s) 219, 254, 262, 434, 464, 634, 638
AluI AGCT 7 cut(s) 219, 254, 262, 434, 464, 634, 638
Alw21I GWGCWC 2 cut(s) 237, 448
Alw26I GTCTC 1 cut(s) 707
AlwI GGATC 2 cut(s) 44, 175
Aor13HI TCCGGA 1 cut(s) 183
AoxI GGCC 4 cut(s) 64, 73, 159, 395
ArsI GACNNNNNNTTYG 2 cut(s) 515, 547
AspLEI GCGC 1 cut(s) 139
AspS9I GGNCC 1 cut(s) 64
AsuC2I CCSGG 1 cut(s) 72
AsuHPI GGTGA 2 cut(s) 544, 722
AsuNHI GCTAGC 1 cut(s) 634
AxyI CCTNAGG 1 cut(s) 30
Bbv12I GWGCWC 2 cut(s) 237, 448
BccI CCATC 1 cut(s) 620
BciT130I CCWGG 2 cut(s) 211, 574
BcnI CCSGG 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 707
BfaI CTAG 2 cut(s) 248, 635
BfmI CTRYAG 1 cut(s) 667
BglI GCCNNNNNGGC 1 cut(s) 72
BisI GCNGC 3 cut(s) 89, 92, 150
BlsI GCNGC 3 cut(s) 90, 93, 151
BmcAI AGTACT 1 cut(s) 344
Bme1390I CCNGG 3 cut(s) 72, 211, 574
BmeRI GACNNNNNGTC 1 cut(s) 720
BmgBI CACGTC 1 cut(s) 129
BmgT120I GGNCC 1 cut(s) 64
BmrFI CCNGG 3 cut(s) 72, 211, 574
BmsI GCATC 3 cut(s) 464, 614, 640
BmtI GCTAGC 1 cut(s) 638
BpmI CTGGAG 5 cut(s) 242, 432, 531, 579, 595
BpuEI CTTGAG 1 cut(s) 444
BpuMI CCSGG 1 cut(s) 72
BsaAI YACGTR 1 cut(s) 326
BsaHI GRCGYC 1 cut(s) 101
BsaJI CCNNGG 2 cut(s) 210, 392
BsaWI WCCGGW 1 cut(s) 183
BsaXI ACNNNNNCTCC 2 cut(s) 568, 598
Bsc4I CCNNNNNNNGG 2 cut(s) 210, 749
Bse1I ACTGG 5 cut(s) 281, 449, 548, 555, 596
Bse21I CCTNAGG 1 cut(s) 30
BseAI TCCGGA 1 cut(s) 183
BseBI CCWGG 2 cut(s) 211, 574
BseDI CCNNGG 2 cut(s) 210, 392
BseGI GGATG 1 cut(s) 415
BseLI CCNNNNNNNGG 2 cut(s) 210, 749
BseMII CTCAG 2 cut(s) 44, 161
BseNI ACTGG 5 cut(s) 281, 449, 548, 555, 596
BseRI GAGGAG 3 cut(s) 378, 381, 517
BseYI CCCAGC 1 cut(s) 22
Bsh1236I CGCG 3 cut(s) 137, 152, 273
BshFI GGCC 4 cut(s) 66, 75, 161, 397
BsiHKAI GWGCWC 2 cut(s) 237, 448
BsiSI CCGG 2 cut(s) 72, 184
BslFI GGGAC 1 cut(s) 382
BslI CCNNNNNNNGG 2 cut(s) 210, 749
BsmAI GTCTC 1 cut(s) 707
BsmFI GGGAC 1 cut(s) 382
BsnI GGCC 4 cut(s) 66, 75, 161, 397
Bsp1286I GDGCHC 2 cut(s) 237, 448
Bsp13I TCCGGA 1 cut(s) 183
Bsp143I GATC 3 cut(s) 49, 166, 180
BspACI CCGC 5 cut(s) 89, 92, 135, 150, 271
BspANI GGCC 4 cut(s) 66, 75, 161, 397
BspCNI CTCAG 2 cut(s) 43, 162
BspEI TCCGGA 1 cut(s) 183
BspFNI CGCG 3 cut(s) 137, 152, 273
BspOI GCTAGC 1 cut(s) 638
BspPI GGATC 2 cut(s) 44, 175
BsrI ACTGG 5 cut(s) 281, 449, 548, 555, 596
BssECI CCNNGG 2 cut(s) 210, 392
BssMI GATC 3 cut(s) 49, 166, 180
BssNI GRCGYC 1 cut(s) 101
Bst2UI CCWGG 2 cut(s) 211, 574
Bst4CI ACNGT 3 cut(s) 313, 671, 718
BstACI GRCGYC 1 cut(s) 101
BstBAI YACGTR 1 cut(s) 326
BstC8I GCNNGC 4 cut(s) 377, 636, 689, 740
BstDEI CTNAG 2 cut(s) 30, 170
BstF5I GGATG 1 cut(s) 415
BstFNI CGCG 3 cut(s) 137, 152, 273
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 3 cut(s) 52, 169, 183
BstMAI GTCTC 1 cut(s) 707
BstMBI GATC 3 cut(s) 49, 166, 180
BstMWI GCNNNNNNNGC 5 cut(s) 72, 100, 158, 452, 461
BstNI CCWGG 2 cut(s) 211, 574
BstNSI RCATGY 2 cut(s) 383, 732
BstSCI CCNGG 3 cut(s) 70, 209, 572
BstSFI CTRYAG 1 cut(s) 667
BstSNI TACGTA 1 cut(s) 326
BstUI CGCG 3 cut(s) 137, 152, 273
BstX2I RGATCY 1 cut(s) 180
BstXI CCANNNNNNTGG 1 cut(s) 61
BstYI RGATCY 1 cut(s) 180
Bsu36I CCTNAGG 1 cut(s) 30
BsuRI GGCC 4 cut(s) 66, 75, 161, 397
BtgZI GCGATG 1 cut(s) 719
BtrI CACGTC 1 cut(s) 129
BtsCI GGATG 1 cut(s) 415
BtsIMutI CAGTG 1 cut(s) 562
Cac8I GCNNGC 4 cut(s) 377, 636, 689, 740
CfoI GCGC 1 cut(s) 139
Cfr13I GGNCC 1 cut(s) 64
CseI GACGC 2 cut(s) 109, 141
Csp6I GTAC 2 cut(s) 343, 383
CviAII CATG 5 cut(s) 61, 332, 380, 503, 729
CviQI GTAC 2 cut(s) 343, 383
DdeI CTNAG 2 cut(s) 30, 170
DpnI GATC 3 cut(s) 51, 168, 182
DpnII GATC 3 cut(s) 49, 166, 180
DriI GACNNNNNGTC 1 cut(s) 720
EaeI YGGCCR 2 cut(s) 159, 395
Eam1105I GACNNNNNGTC 1 cut(s) 720
Eco105I TACGTA 1 cut(s) 326
Eco81I CCTNAGG 1 cut(s) 30
EcoRII CCWGG 2 cut(s) 209, 572
EcoT22I ATGCAT 1 cut(s) 607
FaeI CATG 5 cut(s) 64, 335, 383, 506, 732
FalI AAGNNNNNCTT 2 cut(s) 553, 585
FaqI GGGAC 1 cut(s) 382
FatI CATG 5 cut(s) 60, 331, 379, 502, 728
Fnu4HI GCNGC 3 cut(s) 89, 92, 150
FokI GGATG 1 cut(s) 402
Fsp4HI GCNGC 3 cut(s) 89, 92, 150
FspBI CTAG 2 cut(s) 248, 635
GlaI GCGC 1 cut(s) 138
GluI GCNGC 3 cut(s) 89, 92, 150
GsaI CCCAGC 1 cut(s) 26
GsuI CTGGAG 5 cut(s) 242, 432, 531, 579, 595
HaeIII GGCC 4 cut(s) 66, 75, 161, 397
HapII CCGG 2 cut(s) 72, 184
HgaI GACGC 2 cut(s) 109, 141
HhaI GCGC 1 cut(s) 139
Hin1I GRCGYC 1 cut(s) 101
Hin1II CATG 5 cut(s) 64, 335, 383, 506, 732
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HinfI GANTC 3 cut(s) 479, 524, 577
HpaII CCGG 2 cut(s) 72, 184
HphI GGTGA 2 cut(s) 544, 722
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 3 cut(s) 171, 321, 360
Hpy188III TCNNGA 2 cut(s) 184, 248
Hpy8I GTNNAC 1 cut(s) 13
Hpy99I CGWCG 4 cut(s) 103, 133, 157, 167
HpyAV CCTTC 3 cut(s) 77, 114, 346
HpyCH4III ACNGT 3 cut(s) 313, 671, 718
HpyCH4IV ACGT 2 cut(s) 128, 325
HpyCH4V TGCA 4 cut(s) 335, 560, 605, 653
HpyF10VI GCNNNNNNNGC 5 cut(s) 72, 100, 158, 452, 461
HpyF3I CTNAG 2 cut(s) 30, 170
HpySE526I ACGT 2 cut(s) 128, 325
Hsp92I GRCGYC 1 cut(s) 101
Hsp92II CATG 5 cut(s) 64, 335, 383, 506, 732
HspAI GCGC 1 cut(s) 137
Kpn2I TCCGGA 1 cut(s) 183
Kzo9I GATC 3 cut(s) 49, 166, 180
LmnI GCTCC 3 cut(s) 232, 439, 451
LweI GCATC 3 cut(s) 464, 614, 640
MaeI CTAG 2 cut(s) 248, 635
MaeII ACGT 2 cut(s) 128, 325
MaeIII GTNAC 1 cut(s) 550
MalI GATC 3 cut(s) 51, 168, 182
MboI GATC 3 cut(s) 49, 166, 180
MboII GAAGA 4 cut(s) 190, 292, 295, 561
MflI RGATCY 1 cut(s) 180
MhlI GDGCHC 2 cut(s) 237, 448
MluCI AATT 1 cut(s) 79
MlyI GAGTC 2 cut(s) 518, 586
Mph1103I ATGCAT 1 cut(s) 607
MroI TCCGGA 1 cut(s) 183
MseI TTAA 1 cut(s) 754
MslI CAYNNNNRTG 3 cut(s) 59, 507, 585
MspI CCGG 2 cut(s) 72, 184
MspR9I CCNGG 3 cut(s) 72, 211, 574
MvaI CCWGG 2 cut(s) 211, 574
MvnI CGCG 3 cut(s) 137, 152, 273
MwoI GCNNNNNNNGC 5 cut(s) 72, 100, 158, 452, 461
NciI CCSGG 1 cut(s) 72
NdeII GATC 3 cut(s) 49, 166, 180
NheI GCTAGC 1 cut(s) 634
NlaIII CATG 5 cut(s) 64, 335, 383, 506, 732
NmeAIII GCCGAG 1 cut(s) 373
NmuCI GTSAC 1 cut(s) 550
NsiI ATGCAT 1 cut(s) 607
NspI RCATGY 2 cut(s) 383, 732
PcsI WCGNNNNNNNCGW 1 cut(s) 107
PfeI GAWTC 1 cut(s) 479
PfoI TCCNGGA 1 cut(s) 572
PkrI GCNGC 3 cut(s) 90, 93, 151
PleI GAGTC 2 cut(s) 518, 585
PpsI GAGTC 2 cut(s) 518, 585
Ppu21I YACGTR 1 cut(s) 326
Psp6I CCWGG 2 cut(s) 209, 572
PspFI CCCAGC 1 cut(s) 22
PspGI CCWGG 2 cut(s) 209, 572
PspPI GGNCC 1 cut(s) 64
PsrI GAACNNNNNNTAC 2 cut(s) 650, 682
PsuI RGATCY 1 cut(s) 180
RsaI GTAC 2 cut(s) 344, 384
RsaNI GTAC 2 cut(s) 343, 383
RseI CAYNNNNRTG 3 cut(s) 59, 507, 585
SaqAI TTAA 1 cut(s) 754
SatI GCNGC 3 cut(s) 89, 92, 150
Sau3AI GATC 3 cut(s) 49, 166, 180
Sau96I GGNCC 1 cut(s) 64
ScaI AGTACT 1 cut(s) 344
SchI GAGTC 2 cut(s) 518, 586
ScrFI CCNGG 3 cut(s) 72, 211, 574
SduI GDGCHC 2 cut(s) 237, 448
SfaNI GCATC 3 cut(s) 464, 614, 640
SfcI CTRYAG 1 cut(s) 667
SfiI GGCCNNNNNGGCC 1 cut(s) 72
SmiMI CAYNNNNRTG 3 cut(s) 59, 507, 585
SmlI CTYRAG 1 cut(s) 459
SmoI CTYRAG 1 cut(s) 459
SnaBI TACGTA 1 cut(s) 326
Sse9I AATT 1 cut(s) 79
SsiI CCGC 5 cut(s) 89, 92, 135, 150, 271
SspMI CTAG 2 cut(s) 248, 635
StyD4I CCNGG 3 cut(s) 70, 209, 572
TaaI ACNGT 3 cut(s) 313, 671, 718
TaiI ACGT 2 cut(s) 131, 328
TaqI TCGA 2 cut(s) 48, 724
TasI AATT 1 cut(s) 79
TatI WGTACW 1 cut(s) 342
TauI GCSGC 3 cut(s) 91, 94, 152
TfiI GAWTC 1 cut(s) 479
Tru1I TTAA 1 cut(s) 754
Tru9I TTAA 1 cut(s) 754
TscAI CASTG 1 cut(s) 562
TseFI GTSAC 1 cut(s) 550
Tsp45I GTSAC 1 cut(s) 550
TspDTI ATGAA 1 cut(s) 696
TspGWI ACGGA 1 cut(s) 73
TspRI CASTG 1 cut(s) 562
XbaI TCTAGA 1 cut(s) 247
XceI RCATGY 2 cut(s) 383, 732
XspI CTAG 2 cut(s) 248, 635
ZrmI AGTACT 1 cut(s) 344
Zsp2I ATGCAT 1 cut(s) 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.