Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0006457

Physical Location & Seq

Genomic Coordinates Reverse (-)

51793248 .. 51798089

Gene Structure 4842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG253900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGTGTCTGTGAACCCAAACCCAGCACCTCAGGGTTTCTACTTATTCGATCCCTCCAACATGGGCCTTCCCGGCCTCAATTCCGTGCCGCCGCCCACGACGCCTTCTACGACCACCACCACCACGTCGTGCGCGCCCCAAAACGCCGCGTCGTTGGCCGAAGATCTGAGCAAGAAGATCCGGAAACCCTATACGATTACCAAGTCCAGGGAGAGCTGGACTGAACAGGAGCACGACAAGTTTCTAGAAGCTCTCCAGCTATTTGACCGCGACTGGAAGAAGATTGAAGCATTTATTGGCTCAAAAACGGTTATTCAGATACGTAGCCATGCACAAAAGTACTTTTTGAAGGTTCAGAAAAAAGGGACAAGCGAGCATGTACCTCCTCCTCGGCCAAAGAGGAAAGCAACTCATCCATACCCACAAAAAGCTCCTAAAAGTGCTCCAGTAGCATCTCAAGTTGTTGTGCCATTTGAATCCTCATCTGCTTTGCTTGAACATGGATATGCTTACCAGCCAGACTCCTCATTTGTGCTTGGCACTCCAGTTACCAGTGCAAGTTTATCTTCCTGGAGTCATAGTTATGTGCCTCCAGTCAATGCATCACAAATAACTAAAGATGATGGAAAGCTAGCTGGTTCAACAGATGCACAGAACTCTTGCTACAGTAGTAGTAATGAAAGCAAGCCTACAACTTGGCTAATGGGTGAGACAGTTGGTCGACCATGTCATCGCCAGCCACAGAGAGTTTTGCCAGATTTTGCTCAGGTGTATAAATTCATTGGCAGTGTTTTTGACCCCAATTCGACTAGTCATTTGGAGAGACTGAAACAAATGGACCCTATAAATTTGGAGACAGCACTTTTGTTGATGCGAAATCTATCCATTAATTTAACAAGTCCCGAGTTTGAGGATCATGTAAGTACTTTCCCTCTCAATGACAGTATTTCTTTCTTGACAGCTTTATATGTTCTTGGGTGTTTTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0042493 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

329

Amino Acids

36.37

Weight (kDa)

8.73

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	70 - 115	6.6e-12	Myb-like DNA-binding domain
RVE6	PF24904	251 - 308	9.8e-33	REVEILLE 6-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01520 AT1G01520 AT1G01520 AT1G01520 AT1G01520 AT4G01280 AT4G01280
fragaria_vesca	FvH4_7g15140 FvH4_7g15140 FvH4_7g15140
malus_domestica	MD01G1070000.v1.1 MD07G1132500.v1.1
prunus_persica	Prupe.2G176200_v2.0.a1 Prupe.2G176200_v2.0.a1
pyrus_communis	pycom07g12930
rosa_chinensis	RchiOBHm_Chr1g0357331
rosa_laevigata	RLG00000028026
rosa_multiflora	Rmu_sc0003245.1_g000004
rosa_roxburghii	Rroxscaffold_4G00298820
rosa_rugosa	Rorug01G0256500
rosa_samantha	Rh1AG269700 Rh1BG237600 Rh1CG253900 Rh1DG265500
rosa_wichuraiana	Rw1G023900 Rw1G023950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	721
AccII	CGCG	3 cut(s)	134, 149, 270
AccIII	TCCGGA	1 cut(s)	180
AciI	CCGC	4 cut(s)	89, 92, 147, 268
AclWI	GGATC	3 cut(s)	44, 172, 921
AcoI	YGGCCR	2 cut(s)	156, 392
AcsI	RAATTY	2 cut(s)	776, 847
AcyI	GRCGYC	1 cut(s)	101
AdeI	CACNNNGTG	1 cut(s)	129
AfaI	GTAC	3 cut(s)	341, 381, 925
AfiI	CCNNNNNNNGG	1 cut(s)	207
AgsI	TTSAA	5 cut(s)	287, 349, 476, 497, 642
AhdI	GACNNNNNGTC	1 cut(s)	717
AhlI	ACTAGT	1 cut(s)	809
AjiI	CACGTC	1 cut(s)	126
AjnI	CCWGG	2 cut(s)	206, 569
AjuI	GAANNNNNNNTTGG	2 cut(s)	279, 311
AluBI	AGCT	7 cut(s)	216, 251, 259, 431, 631, 635, 962
AluI	AGCT	7 cut(s)	216, 251, 259, 431, 631, 635, 962
Alw21I	GWGCWC	2 cut(s)	234, 445
Alw26I	GTCTC	3 cut(s)	704, 817, 848
AlwI	GGATC	3 cut(s)	44, 172, 921
Ama87I	CYCGRG	1 cut(s)	902
Aor13HI	TCCGGA	1 cut(s)	180
AoxI	GGCC	4 cut(s)	64, 73, 156, 392
ApoI	RAATTY	2 cut(s)	776, 847
ArsI	GACNNNNNNTTYG	6 cut(s)	512, 544, 799, 831, 847, 879
AseI	ATTAAT	1 cut(s)	888
AspLEI	GCGC	2 cut(s)	134, 136
AspS9I	GGNCC	2 cut(s)	64, 838
AsuC2I	CCSGG	1 cut(s)	72
AsuHPI	GGTGA	1 cut(s)	719
AsuNHI	GCTAGC	1 cut(s)	631
AvaI	CYCGRG	1 cut(s)	902
AvaII	GGWCC	1 cut(s)	838
AxyI	CCTNAGG	1 cut(s)	30
Bbv12I	GWGCWC	2 cut(s)	234, 445
BccI	CCATC	1 cut(s)	617
BciT130I	CCWGG	2 cut(s)	208, 571
BcnI	CCSGG	1 cut(s)	72
BcoDI	GTCTC	3 cut(s)	704, 817, 848
BcuI	ACTAGT	1 cut(s)	809
BfaI	CTAG	3 cut(s)	245, 632, 810
BfmI	CTRYAG	1 cut(s)	664
BglI	GCCNNNNNGGC	1 cut(s)	72
BglII	AGATCT	1 cut(s)	163
BisI	GCNGC	3 cut(s)	89, 92, 147
BlsI	GCNGC	3 cut(s)	90, 93, 148
BmcAI	AGTACT	2 cut(s)	341, 925
Bme1390I	CCNGG	3 cut(s)	72, 208, 571
Bme18I	GGWCC	1 cut(s)	838
BmeRI	GACNNNNNGTC	1 cut(s)	717
BmeT110I	CYCGRG	1 cut(s)	902
BmgBI	CACGTC	1 cut(s)	126
BmgT120I	GGNCC	2 cut(s)	64, 838
BmiI	GGNNCC	1 cut(s)	840
BmrFI	CCNGG	3 cut(s)	72, 208, 571
BmsI	GCATC	4 cut(s)	461, 611, 637, 861
BmtI	GCTAGC	1 cut(s)	635
BpmI	CTGGAG	5 cut(s)	239, 429, 528, 576, 592
Bpu10I	CCTNAGC	1 cut(s)	765
BpuEI	CTTGAG	1 cut(s)	441
BpuMI	CCSGG	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	323
BsaHI	GRCGYC	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	207, 389
BsaWI	WCCGGW	1 cut(s)	180
BsaXI	ACNNNNNCTCC	2 cut(s)	565, 595
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse1I	ACTGG	5 cut(s)	278, 446, 545, 552, 593
Bse21I	CCTNAGG	1 cut(s)	30
BseAI	TCCGGA	1 cut(s)	180
BseBI	CCWGG	2 cut(s)	208, 571
BseDI	CCNNGG	2 cut(s)	207, 389
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMII	CTCAG	3 cut(s)	44, 158, 779
BseNI	ACTGG	5 cut(s)	278, 446, 545, 552, 593
BsePI	GCGCGC	1 cut(s)	132
BseRI	GAGGAG	3 cut(s)	375, 378, 514
BseYI	CCCAGC	1 cut(s)	22
Bsh1236I	CGCG	3 cut(s)	134, 149, 270
BshFI	GGCC	4 cut(s)	66, 75, 158, 394
BsiHKAI	GWGCWC	2 cut(s)	234, 445
BsiHKCI	CYCGRG	1 cut(s)	902
BsiSI	CCGG	2 cut(s)	72, 181
BslFI	GGGAC	2 cut(s)	379, 885
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmAI	GTCTC	3 cut(s)	704, 817, 848
BsmFI	GGGAC	2 cut(s)	379, 885
BsnI	GGCC	4 cut(s)	66, 75, 158, 394
BsoBI	CYCGRG	1 cut(s)	902
Bsp1286I	GDGCHC	2 cut(s)	234, 445
Bsp13I	TCCGGA	1 cut(s)	180
Bsp143I	GATC	4 cut(s)	49, 163, 177, 913
BspACI	CCGC	4 cut(s)	89, 92, 147, 268
BspANI	GGCC	4 cut(s)	66, 75, 158, 394
BspCNI	CTCAG	3 cut(s)	43, 159, 778
BspEI	TCCGGA	1 cut(s)	180
BspFNI	CGCG	3 cut(s)	134, 149, 270
BspLI	GGNNCC	1 cut(s)	840
BspOI	GCTAGC	1 cut(s)	635
BspPI	GGATC	3 cut(s)	44, 172, 921
BsrI	ACTGG	5 cut(s)	278, 446, 545, 552, 593
BssECI	CCNNGG	2 cut(s)	207, 389
BssHII	GCGCGC	1 cut(s)	132
BssMI	GATC	4 cut(s)	49, 163, 177, 913
BssNI	GRCGYC	1 cut(s)	101
Bst2UI	CCWGG	2 cut(s)	208, 571
Bst4CI	ACNGT	4 cut(s)	310, 668, 715, 944
BstACI	GRCGYC	1 cut(s)	101
BstBAI	YACGTR	1 cut(s)	323
BstC8I	GCNNGC	5 cut(s)	134, 374, 633, 686, 737
BstDEI	CTNAG	3 cut(s)	30, 167, 765
BstF5I	GGATG	1 cut(s)	412
BstFNI	CGCG	3 cut(s)	134, 149, 270
BstHHI	GCGC	2 cut(s)	134, 136
BstKTI	GATC	4 cut(s)	52, 166, 180, 916
BstMAI	GTCTC	3 cut(s)	704, 817, 848
BstMBI	GATC	4 cut(s)	49, 163, 177, 913
BstMWI	GCNNNNNNNGC	4 cut(s)	72, 100, 155, 449
BstNI	CCWGG	2 cut(s)	208, 571
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	3 cut(s)	70, 206, 569
BstSFI	CTRYAG	1 cut(s)	664
BstSNI	TACGTA	1 cut(s)	323
BstUI	CGCG	3 cut(s)	134, 149, 270
BstX2I	RGATCY	2 cut(s)	163, 177
BstYI	RGATCY	2 cut(s)	163, 177
Bsu36I	CCTNAGG	1 cut(s)	30
BsuRI	GGCC	4 cut(s)	66, 75, 158, 394
BtgZI	GCGATG	1 cut(s)	716
BtrI	CACGTC	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	412
BtsI	GCAGTG	1 cut(s)	793
BtsIMutI	CAGTG	2 cut(s)	559, 793
Cac8I	GCNNGC	5 cut(s)	134, 374, 633, 686, 737
CfoI	GCGC	2 cut(s)	134, 136
Cfr13I	GGNCC	2 cut(s)	64, 838
CseI	GACGC	2 cut(s)	109, 138
Csp6I	GTAC	3 cut(s)	340, 380, 924
CviAII	CATG	6 cut(s)	61, 329, 377, 500, 726, 917
CviQI	GTAC	3 cut(s)	340, 380, 924
DdeI	CTNAG	3 cut(s)	30, 167, 765
DpnI	GATC	4 cut(s)	51, 165, 179, 915
DpnII	GATC	4 cut(s)	49, 163, 177, 913
DraIII	CACNNNGTG	1 cut(s)	129
DriI	GACNNNNNGTC	1 cut(s)	717
EaeI	YGGCCR	2 cut(s)	156, 392
Eam1105I	GACNNNNNGTC	1 cut(s)	717
Eco105I	TACGTA	1 cut(s)	323
Eco47I	GGWCC	1 cut(s)	838
Eco81I	CCTNAGG	1 cut(s)	30
Eco88I	CYCGRG	1 cut(s)	902
EcoRII	CCWGG	2 cut(s)	206, 569
EcoT22I	ATGCAT	1 cut(s)	604
FaeI	CATG	6 cut(s)	64, 332, 380, 503, 729, 920
FalI	AAGNNNNNCTT	2 cut(s)	550, 582
FaqI	GGGAC	2 cut(s)	379, 885
FatI	CATG	6 cut(s)	60, 328, 376, 499, 725, 916
FblI	GTMKAC	1 cut(s)	721
Fnu4HI	GCNGC	3 cut(s)	89, 92, 147
FokI	GGATG	1 cut(s)	399
Fsp4HI	GCNGC	3 cut(s)	89, 92, 147
FspBI	CTAG	3 cut(s)	245, 632, 810
GlaI	GCGC	2 cut(s)	133, 135
GluI	GCNGC	3 cut(s)	89, 92, 147
GsaI	CCCAGC	1 cut(s)	26
GsuI	CTGGAG	5 cut(s)	239, 429, 528, 576, 592
HaeIII	GGCC	4 cut(s)	66, 75, 158, 394
HapII	CCGG	2 cut(s)	72, 181
HgaI	GACGC	2 cut(s)	109, 138
HhaI	GCGC	2 cut(s)	134, 136
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	6 cut(s)	64, 332, 380, 503, 729, 920
Hin6I	GCGC	2 cut(s)	132, 134
HinP1I	GCGC	2 cut(s)	132, 134
HincII	GTYRAC	1 cut(s)	722
HindII	GTYRAC	1 cut(s)	722
HinfI	GANTC	3 cut(s)	476, 521, 574
HpaII	CCGG	2 cut(s)	72, 181
HphI	GGTGA	1 cut(s)	719
Hpy166II	GTNNAC	2 cut(s)	13, 722
Hpy188I	TCNGA	3 cut(s)	168, 318, 357
Hpy188III	TCNNGA	4 cut(s)	181, 245, 902, 955
Hpy8I	GTNNAC	2 cut(s)	13, 722
Hpy99I	CGWCG	3 cut(s)	103, 130, 154
HpyAV	CCTTC	3 cut(s)	77, 114, 343
HpyCH4III	ACNGT	4 cut(s)	310, 668, 715, 944
HpyCH4IV	ACGT	2 cut(s)	125, 322
HpyCH4V	TGCA	4 cut(s)	332, 557, 602, 650
HpyF10VI	GCNNNNNNNGC	4 cut(s)	72, 100, 155, 449
HpyF3I	CTNAG	3 cut(s)	30, 167, 765
HpySE526I	ACGT	2 cut(s)	125, 322
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	6 cut(s)	64, 332, 380, 503, 729, 920
HspAI	GCGC	2 cut(s)	132, 134
Kpn2I	TCCGGA	1 cut(s)	180
Kzo9I	GATC	4 cut(s)	49, 163, 177, 913
LmnI	GCTCC	3 cut(s)	229, 436, 448
LweI	GCATC	4 cut(s)	461, 611, 637, 861
MaeI	CTAG	3 cut(s)	245, 632, 810
MaeII	ACGT	2 cut(s)	125, 322
MaeIII	GTNAC	1 cut(s)	547
MalI	GATC	4 cut(s)	51, 165, 179, 915
MboI	GATC	4 cut(s)	49, 163, 177, 913
MboII	GAAGA	5 cut(s)	173, 187, 289, 292, 558
MflI	RGATCY	2 cut(s)	163, 177
MhlI	GDGCHC	2 cut(s)	234, 445
MluCI	AATT	5 cut(s)	79, 776, 802, 847, 889
MlyI	GAGTC	2 cut(s)	515, 583
MmeI	TCCRAC	1 cut(s)	81
Mph1103I	ATGCAT	1 cut(s)	604
MroI	TCCGGA	1 cut(s)	180
MseI	TTAA	3 cut(s)	888, 893, 984
MslI	CAYNNNNRTG	2 cut(s)	504, 582
MspI	CCGG	2 cut(s)	72, 181
MspR9I	CCNGG	3 cut(s)	72, 208, 571
MvaI	CCWGG	2 cut(s)	208, 571
MvnI	CGCG	3 cut(s)	134, 149, 270
MwoI	GCNNNNNNNGC	4 cut(s)	72, 100, 155, 449
NciI	CCSGG	1 cut(s)	72
NdeII	GATC	4 cut(s)	49, 163, 177, 913
NheI	GCTAGC	1 cut(s)	631
NlaIII	CATG	6 cut(s)	64, 332, 380, 503, 729, 920
NlaIV	GGNNCC	1 cut(s)	840
NmeAIII	GCCGAG	1 cut(s)	370
NsiI	ATGCAT	1 cut(s)	604
NspI	RCATGY	1 cut(s)	380
PauI	GCGCGC	1 cut(s)	132
PcsI	WCGNNNNNNNCGW	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	476
PflFI	GACNNNGTC	1 cut(s)	726
PfoI	TCCNGGA	1 cut(s)	569
PkrI	GCNGC	3 cut(s)	90, 93, 148
PleI	GAGTC	2 cut(s)	515, 582
PpsI	GAGTC	2 cut(s)	515, 582
Ppu21I	YACGTR	1 cut(s)	323
PshBI	ATTAAT	1 cut(s)	888
Psp6I	CCWGG	2 cut(s)	206, 569
PspFI	CCCAGC	1 cut(s)	22
PspGI	CCWGG	2 cut(s)	206, 569
PspN4I	GGNNCC	1 cut(s)	840
PspPI	GGNCC	2 cut(s)	64, 838
PsrI	GAACNNNNNNTAC	2 cut(s)	647, 679
PsuI	RGATCY	2 cut(s)	163, 177
PsyI	GACNNNGTC	1 cut(s)	726
PteI	GCGCGC	1 cut(s)	132
RsaI	GTAC	3 cut(s)	341, 381, 925
RsaNI	GTAC	3 cut(s)	340, 380, 924
RseI	CAYNNNNRTG	2 cut(s)	504, 582
SalI	GTCGAC	1 cut(s)	720
SaqAI	TTAA	3 cut(s)	888, 893, 984
SatI	GCNGC	3 cut(s)	89, 92, 147
Sau3AI	GATC	4 cut(s)	49, 163, 177, 913
Sau96I	GGNCC	2 cut(s)	64, 838
ScaI	AGTACT	2 cut(s)	341, 925
SchI	GAGTC	2 cut(s)	515, 583
ScrFI	CCNGG	3 cut(s)	72, 208, 571
SduI	GDGCHC	2 cut(s)	234, 445
SfaNI	GCATC	4 cut(s)	461, 611, 637, 861
SfcI	CTRYAG	1 cut(s)	664
SfiI	GGCCNNNNNGGCC	1 cut(s)	72
SinI	GGWCC	1 cut(s)	838
SmiMI	CAYNNNNRTG	2 cut(s)	504, 582
SmlI	CTYRAG	1 cut(s)	456
SmoI	CTYRAG	1 cut(s)	456
SnaBI	TACGTA	1 cut(s)	323
SpeI	ACTAGT	1 cut(s)	809
Sse9I	AATT	5 cut(s)	79, 776, 802, 847, 889
SsiI	CCGC	4 cut(s)	89, 92, 147, 268
SspMI	CTAG	3 cut(s)	245, 632, 810
StyD4I	CCNGG	3 cut(s)	70, 206, 569
TaaI	ACNGT	4 cut(s)	310, 668, 715, 944
TaiI	ACGT	2 cut(s)	128, 325
TaqI	TCGA	3 cut(s)	48, 721, 806
TasI	AATT	5 cut(s)	79, 776, 802, 847, 889
TatI	WGTACW	2 cut(s)	339, 923
TauI	GCSGC	3 cut(s)	91, 94, 149
TfiI	GAWTC	1 cut(s)	476
Tru1I	TTAA	3 cut(s)	888, 893, 984
Tru9I	TTAA	3 cut(s)	888, 893, 984
TscAI	CASTG	2 cut(s)	559, 793
TspDTI	ATGAA	2 cut(s)	693, 769
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	2 cut(s)	559, 793
Tth111I	GACNNNGTC	1 cut(s)	726
VpaK11BI	GGWCC	1 cut(s)	838
VspI	ATTAAT	1 cut(s)	888
XapI	RAATTY	2 cut(s)	776, 847
XbaI	TCTAGA	1 cut(s)	244
XceI	RCATGY	1 cut(s)	380
XmiI	GTMKAC	1 cut(s)	721
XspI	CTAG	3 cut(s)	245, 632, 810
ZrmI	AGTACT	2 cut(s)	341, 925
Zsp2I	ATGCAT	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.