MD07G1132500.v1.1
MYB Family

reveille

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
19172424 .. 19180476
8053 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1132500.v1.1.491

Sequence Viewer

Length: 1089 bp
ATGGTGTCTGTGAATCCAAACCCACCTCAAGGTTTCTACTTATTCGATCCCATGAATACCAATATGGGTCTTCCGGGTCTCAGTTCTATGCCGCCGCCGCCGCCTACTGCTGCTGCTTCAGCTACGGCGGCGACCAGTACGACTGCTGCCTGCACGGCGTCGTCCGCGGCCGCAAACGCCGCGTCGATGTCGGCGGATGATCAGAGCAAGAAAATCCGGAAACCGTATACGATTACCAAGTCGAGAGAGAGCTGGACGGACCAGGAGCACGACAAGTTTCTCGAAGCTCTTCAGCTATTTGATCGTGACTGGAAGAAGATTGAATCATTTGTTGGCTCAAAAACGGTTATCCAGATCCGTAGTCATGCACAGAAGTACTTTTTGAAGGTTCAGAAGAAAGGGACAAGCGAACATGTACCTCCACCTAGGCCAAAGAGGAAAGCAACTCACCCATACCCGCAAAAAGCTCCCAAAATTGCTGCAGTTGTATCTCAAGTAGCTGGGCCGTTTCAATCTTCATCTGATTTGCTTGAACATGGATATGTTTACCAGCCAGATTCCTCATTTGTGCTTGGAACTCCAGTTAACTCTGCAACATTATCTTCTTGGAGTTGTAATTCTATGCCACCAGTCAACATAACTAAAGATGAAGGAAGGTTATCTGGGCAAACTGTTACACATAACTCTTGCTACAGTAGTAGCAATGAAAGCAACCCGATAAATTGGAATATGCGTGAGACAGTTGATGGAGTAGATCCTGGCCAGCCACAAAGAGTTCTGCTGGTATTAACTATAGTTCCTGTATATGCAGTTTTGCCAGATTTTGCTCAGGTGTATAAATTTATCGGAAGTGTGTTCGACCCCAGTACAAGTAATCATATGGAGAGGCTGAGACAATTGGATCCCATAAATTTGGAAACTGCACTTTTGCTGATGCGGAACCTCTCCATTAATTTGACAAGGCCCGAGTTTGAGGACCATAGAAAGCTAATTGAATCGGATGGTGCCGGCTCAGTCAAAACTAAATCCAATGGCAATTTCAACTTGTCTCGCATTGTCAAATCAGAGAATCCCATCCTATCTTCTTGA

Protein Analysis

363

Amino Acids

39.66

Weight (kDa)

8.96

Isoelectric Point (pI)

45.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 82 - 127 1.3e-11 Myb-like DNA-binding domain
RVE6 PF24904 272 - 331 3.5e-33 REVEILLE 6-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1004
AccI GTMKAC 1 cut(s) 227
AccII CGCG 2 cut(s) 167, 182
AccIII TCCGGA 1 cut(s) 216
AclWI GGATC 5 cut(s) 41, 349, 749, 896, 909
AcoI YGGCCR 2 cut(s) 168, 760
AcsI RAATTY 2 cut(s) 839, 910
AcuI CTGAAG 2 cut(s) 102, 275
AcyI GRCGYC 1 cut(s) 158
AfaI GTAC 4 cut(s) 139, 377, 417, 868
AfiI CCNNNNNNNGG 1 cut(s) 29
AflIII ACRYGT 1 cut(s) 412
AgsI TTSAA 6 cut(s) 323, 385, 512, 533, 995, 1042
AjnI CCWGG 2 cut(s) 261, 757
AjuI GAANNNNNNNTTGG 4 cut(s) 315, 347, 1022, 1054
AluBI AGCT 7 cut(s) 122, 252, 287, 295, 467, 500, 988
AluI AGCT 7 cut(s) 122, 252, 287, 295, 467, 500, 988
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 4 cut(s) 83, 731, 886, 1053
AlwI GGATC 5 cut(s) 41, 349, 749, 896, 909
Ama87I CYCGRG 1 cut(s) 965
Aor13HI TCCGGA 1 cut(s) 216
AoxI GGCC 5 cut(s) 168, 428, 503, 760, 962
ApeKI GCWGC 4 cut(s) 110, 113, 146, 479
ApoI RAATTY 2 cut(s) 839, 910
ArsI GACNNNNNNTTYG 2 cut(s) 167, 199
AseI ATTAAT 1 cut(s) 951
Asp700I GAANNNNTTC 1 cut(s) 288
AspA2I CCTAGG 1 cut(s) 425
AspS9I GGNCC 4 cut(s) 259, 503, 963, 976
AsuC2I CCSGG 1 cut(s) 75
AsuHPI GGTGA 1 cut(s) 440
AvaI CYCGRG 1 cut(s) 965
AvaII GGWCC 2 cut(s) 259, 976
AvrII CCTAGG 1 cut(s) 425
BalI TGGCCA 1 cut(s) 762
BamHI GGATCC 1 cut(s) 901
BanI GGYRCC 1 cut(s) 1004
BbsI GAAGAC 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 4 cut(s) 97, 100, 133, 466
BccI CCATC 3 cut(s) 740, 995, 1082
BceAI ACGGC 3 cut(s) 141, 171, 490
BciT130I CCWGG 2 cut(s) 263, 759
BclI TGATCA 1 cut(s) 199
BcnI CCSGG 1 cut(s) 75
BcoDI GTCTC 4 cut(s) 83, 731, 886, 1053
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 3 cut(s) 480, 691, 792
BglI GCCNNNNNGGC 1 cut(s) 155
BlnI CCTAGG 1 cut(s) 425
BmcAI AGTACT 1 cut(s) 377
Bme1390I CCNGG 3 cut(s) 75, 263, 759
Bme18I GGWCC 2 cut(s) 259, 976
BmeT110I CYCGRG 1 cut(s) 965
BmgT120I GGNCC 4 cut(s) 259, 503, 963, 976
BmiI GGNNCC 3 cut(s) 903, 941, 1006
BmrFI CCNGG 3 cut(s) 75, 263, 759
BmrI ACTGGG 1 cut(s) 858
BmsI GCATC 1 cut(s) 924
BmuI ACTGGG 1 cut(s) 858
BpiI GAAGAC 1 cut(s) 62
BpmI CTGGAG 1 cut(s) 564
Bpu10I CCTNAGC 1 cut(s) 828
BpuEI CTTGAG 2 cut(s) 12, 477
BpuMI CCSGG 1 cut(s) 75
BsaHI GRCGYC 1 cut(s) 158
BsaI GGTCTC 1 cut(s) 83
BsaJI CCNNGG 2 cut(s) 165, 425
BsaWI WCCGGW 1 cut(s) 216
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse118I RCCGGY 1 cut(s) 1007
Bse1I ACTGG 5 cut(s) 135, 314, 581, 629, 864
Bse3DI GCAATG 1 cut(s) 709
BseAI TCCGGA 1 cut(s) 216
BseBI CCWGG 2 cut(s) 263, 759
BseDI CCNNGG 2 cut(s) 165, 425
BseGI GGATG 3 cut(s) 202, 1006, 1074
BseLI CCNNNNNNNGG 1 cut(s) 29
BseMI GCAATG 1 cut(s) 709
BseMII CTCAG 4 cut(s) 94, 842, 881, 1026
BseNI ACTGG 5 cut(s) 135, 314, 581, 629, 864
BseX3I CGGCCG 1 cut(s) 168
BseXI GCAGC 4 cut(s) 97, 100, 133, 466
BseYI CCCAGC 1 cut(s) 500
BsgI GTGCAG 2 cut(s) 136, 906
Bsh1236I CGCG 2 cut(s) 167, 182
Bsh1285I CGRYCG 1 cut(s) 171
BshFI GGCC 5 cut(s) 170, 430, 505, 762, 964
BshNI GGYRCC 1 cut(s) 1004
BsiEI CGRYCG 1 cut(s) 171
BsiHKAI GWGCWC 1 cut(s) 270
BsiHKCI CYCGRG 1 cut(s) 965
BsiSI CCGG 3 cut(s) 74, 217, 1008
BslFI GGGAC 1 cut(s) 415
BslI CCNNNNNNNGG 1 cut(s) 29
BsmAI GTCTC 4 cut(s) 83, 731, 886, 1053
BsmFI GGGAC 1 cut(s) 415
BsnI GGCC 5 cut(s) 170, 430, 505, 762, 964
Bso31I GGTCTC 1 cut(s) 83
BsoBI CYCGRG 1 cut(s) 965
Bsp1286I GDGCHC 1 cut(s) 270
Bsp13I TCCGGA 1 cut(s) 216
Bsp143I GATC 6 cut(s) 46, 199, 301, 354, 754, 901
BspANI GGCC 5 cut(s) 170, 430, 505, 762, 964
BspCNI CTCAG 4 cut(s) 93, 841, 882, 1025
BspEI TCCGGA 1 cut(s) 216
BspFNI CGCG 2 cut(s) 167, 182
BspLI GGNNCC 3 cut(s) 903, 941, 1006
BspMAI CTGCAG 1 cut(s) 484
BspPI GGATC 5 cut(s) 41, 349, 749, 896, 909
BspQI GCTCTTC 1 cut(s) 294
BspT107I GGYRCC 1 cut(s) 1004
BspTNI GGTCTC 1 cut(s) 83
BsrDI GCAATG 1 cut(s) 709
BsrFI RCCGGY 1 cut(s) 1007
BsrI ACTGG 5 cut(s) 135, 314, 581, 629, 864
BssAI RCCGGY 1 cut(s) 1007
BssECI CCNNGG 2 cut(s) 165, 425
BssMI GATC 6 cut(s) 46, 199, 301, 354, 754, 901
BssNAI GTATAC 1 cut(s) 228
BssNI GRCGYC 1 cut(s) 158
BssT1I CCWWGG 1 cut(s) 425
Bst1107I GTATAC 1 cut(s) 228
Bst2UI CCWGG 2 cut(s) 263, 759
Bst4CI ACNGT 5 cut(s) 225, 346, 673, 695, 742
Bst6I CTCTTC 1 cut(s) 294
BstACI GRCGYC 1 cut(s) 158
BstC8I GCNNGC 3 cut(s) 151, 764, 1009
BstDEI CTNAG 4 cut(s) 80, 828, 890, 1012
BstDSI CCRYGG 1 cut(s) 165
BstF5I GGATG 3 cut(s) 202, 1006, 1074
BstFNI CGCG 2 cut(s) 167, 182
BstKTI GATC 6 cut(s) 49, 202, 304, 357, 757, 904
BstMAI GTCTC 4 cut(s) 83, 731, 886, 1053
BstMBI GATC 6 cut(s) 46, 199, 301, 354, 754, 901
BstMCI CGRYCG 1 cut(s) 171
BstMWI GCNNNNNNNGC 9 cut(s) 97, 100, 119, 128, 155, 164, 176, 179, 708
BstNI CCWGG 2 cut(s) 263, 759
BstNSI RCATGY 1 cut(s) 416
BstSCI CCNGG 3 cut(s) 73, 261, 757
BstSFI CTRYAG 3 cut(s) 480, 691, 792
BstUI CGCG 2 cut(s) 167, 182
BstV1I GCAGC 4 cut(s) 97, 100, 133, 466
BstV2I GAAGAC 1 cut(s) 62
BstX2I RGATCY 3 cut(s) 354, 754, 901
BstXI CCANNNNNNTGG 1 cut(s) 913
BstYI RGATCY 3 cut(s) 354, 754, 901
BstZ17I GTATAC 1 cut(s) 228
BstZI CGGCCG 1 cut(s) 168
BsuRI GGCC 5 cut(s) 170, 430, 505, 762, 964
BtgI CCRYGG 1 cut(s) 165
BtsCI GGATG 3 cut(s) 202, 1006, 1074
Cac8I GCNNGC 3 cut(s) 151, 764, 1009
CciNI GCGGCCGC 1 cut(s) 168
Cfr10I RCCGGY 1 cut(s) 1007
Cfr13I GGNCC 4 cut(s) 259, 503, 963, 976
Cfr42I CCGCGG 1 cut(s) 168
CseI GACGC 2 cut(s) 147, 171
Csp6I GTAC 4 cut(s) 138, 376, 416, 867
CviAII CATG 4 cut(s) 52, 365, 413, 536
CviQI GTAC 4 cut(s) 138, 376, 416, 867
DdeI CTNAG 4 cut(s) 80, 828, 890, 1012
DpnI GATC 6 cut(s) 48, 201, 303, 356, 756, 903
DpnII GATC 6 cut(s) 46, 199, 301, 354, 754, 901
EaeI YGGCCR 2 cut(s) 168, 760
EagI CGGCCG 1 cut(s) 168
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
EciI GGCGGA 1 cut(s) 209
EclXI CGGCCG 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 425
Eco31I GGTCTC 1 cut(s) 83
Eco47I GGWCC 2 cut(s) 259, 976
Eco52I CGGCCG 1 cut(s) 168
Eco57I CTGAAG 2 cut(s) 102, 275
Eco88I CYCGRG 1 cut(s) 965
EcoRII CCWGG 2 cut(s) 261, 757
EcoT14I CCWWGG 1 cut(s) 425
ErhI CCWWGG 1 cut(s) 425
FaeI CATG 4 cut(s) 55, 368, 416, 539
FaqI GGGAC 1 cut(s) 415
FatI CATG 4 cut(s) 51, 364, 412, 535
FauI CCCGC 1 cut(s) 465
FauNDI CATATG 1 cut(s) 879
FbaI TGATCA 1 cut(s) 199
FblI GTMKAC 1 cut(s) 227
FokI GGATG 3 cut(s) 209, 1013, 1061
FspBI CTAG 1 cut(s) 426
GsaI CCCAGC 1 cut(s) 504
GsuI CTGGAG 1 cut(s) 564
HaeIII GGCC 5 cut(s) 170, 430, 505, 762, 964
HapII CCGG 3 cut(s) 74, 217, 1008
HgaI GACGC 2 cut(s) 147, 171
Hin1I GRCGYC 1 cut(s) 158
Hin1II CATG 4 cut(s) 55, 368, 416, 539
HincII GTYRAC 2 cut(s) 586, 634
HindII GTYRAC 2 cut(s) 586, 634
HinfI GANTC 5 cut(s) 13, 323, 557, 995, 1069
HpaI GTTAAC 1 cut(s) 586
HpaII CCGG 3 cut(s) 74, 217, 1008
HphI GGTGA 1 cut(s) 440
Hpy166II GTNNAC 4 cut(s) 228, 547, 586, 634
Hpy188I TCNGA 6 cut(s) 204, 393, 523, 848, 1000, 1066
Hpy188III TCNNGA 6 cut(s) 217, 243, 281, 305, 352, 1086
Hpy8I GTNNAC 4 cut(s) 228, 547, 586, 634
Hpy99I CGWCG 2 cut(s) 163, 187
HpyAV CCTTC 3 cut(s) 379, 644, 648
HpyCH4III ACNGT 5 cut(s) 225, 346, 673, 695, 742
HpyCH4V TGCA 6 cut(s) 153, 368, 482, 593, 809, 923
HpyF10VI GCNNNNNNNGC 9 cut(s) 97, 100, 119, 128, 155, 164, 176, 179, 708
HpyF3I CTNAG 4 cut(s) 80, 828, 890, 1012
Hsp92I GRCGYC 1 cut(s) 158
Hsp92II CATG 4 cut(s) 55, 368, 416, 539
Kpn2I TCCGGA 1 cut(s) 216
KroI GCCGGC 1 cut(s) 1007
KroNI GCCGGC 1 cut(s) 1009
Ksp22I TGATCA 1 cut(s) 199
KspAI GTTAAC 1 cut(s) 586
KspI CCGCGG 1 cut(s) 168
Kzo9I GATC 6 cut(s) 46, 199, 301, 354, 754, 901
LguI GCTCTTC 1 cut(s) 294
LmnI GCTCC 2 cut(s) 265, 472
Lsp1109I GCAGC 4 cut(s) 97, 100, 133, 466
LweI GCATC 1 cut(s) 924
MaeI CTAG 1 cut(s) 426
MaeIII GTNAC 2 cut(s) 305, 673
MalI GATC 6 cut(s) 48, 201, 303, 356, 756, 903
MboI GATC 6 cut(s) 46, 199, 301, 354, 754, 901
MboII GAAGA 8 cut(s) 62, 281, 325, 328, 406, 507, 594, 1074
MfeI CAATTG 1 cut(s) 896
MflI RGATCY 3 cut(s) 354, 754, 901
MhlI GDGCHC 1 cut(s) 270
MlsI TGGCCA 1 cut(s) 762
MluCI AATT 9 cut(s) 474, 616, 721, 839, 896, 910, 952, 990, 1036
MluNI TGGCCA 1 cut(s) 762
MnlI CCTC 7 cut(s) 36, 429, 429, 571, 879, 953, 967
Mox20I TGGCCA 1 cut(s) 762
MroI TCCGGA 1 cut(s) 216
MroNI GCCGGC 1 cut(s) 1007
MroXI GAANNNNTTC 1 cut(s) 288
MscI TGGCCA 1 cut(s) 762
MseI TTAA 3 cut(s) 585, 788, 951
MslI CAYNNNNRTG 1 cut(s) 540
Msp20I TGGCCA 1 cut(s) 762
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 3 cut(s) 74, 217, 1008
MspR9I CCNGG 3 cut(s) 75, 263, 759
MunI CAATTG 1 cut(s) 896
MvaI CCWGG 2 cut(s) 263, 759
MvnI CGCG 2 cut(s) 167, 182
MwoI GCNNNNNNNGC 9 cut(s) 97, 100, 119, 128, 155, 164, 176, 179, 708
NaeI GCCGGC 1 cut(s) 1009
NciI CCSGG 1 cut(s) 75
NdeI CATATG 1 cut(s) 879
NdeII GATC 6 cut(s) 46, 199, 301, 354, 754, 901
NgoMIV GCCGGC 1 cut(s) 1007
NlaIII CATG 4 cut(s) 55, 368, 416, 539
NlaIV GGNNCC 3 cut(s) 903, 941, 1006
NmuCI GTSAC 1 cut(s) 305
NotI GCGGCCGC 1 cut(s) 168
NspI RCATGY 1 cut(s) 416
PciI ACATGT 1 cut(s) 412
PciSI GCTCTTC 1 cut(s) 294
PdiI GCCGGC 1 cut(s) 1009
PdmI GAANNNNTTC 1 cut(s) 288
PfeI GAWTC 5 cut(s) 13, 323, 557, 995, 1069
PscI ACATGT 1 cut(s) 412
PshBI ATTAAT 1 cut(s) 951
Psp6I CCWGG 2 cut(s) 261, 757
PspFI CCCAGC 1 cut(s) 500
PspGI CCWGG 2 cut(s) 261, 757
PspN4I GGNNCC 3 cut(s) 903, 941, 1006
PspPI GGNCC 4 cut(s) 259, 503, 963, 976
PstI CTGCAG 1 cut(s) 484
PsuI RGATCY 3 cut(s) 354, 754, 901
RsaI GTAC 4 cut(s) 139, 377, 417, 868
RsaNI GTAC 4 cut(s) 138, 376, 416, 867
RseI CAYNNNNRTG 1 cut(s) 540
SacII CCGCGG 1 cut(s) 168
SapI GCTCTTC 1 cut(s) 294
SaqAI TTAA 3 cut(s) 585, 788, 951
Sau3AI GATC 6 cut(s) 46, 199, 301, 354, 754, 901
Sau96I GGNCC 4 cut(s) 259, 503, 963, 976
ScaI AGTACT 1 cut(s) 377
ScrFI CCNGG 3 cut(s) 75, 263, 759
SduI GDGCHC 1 cut(s) 270
SfaNI GCATC 1 cut(s) 924
SfcI CTRYAG 3 cut(s) 480, 691, 792
Sfr303I CCGCGG 1 cut(s) 168
SgrBI CCGCGG 1 cut(s) 168
SinI GGWCC 2 cut(s) 259, 976
SmiMI CAYNNNNRTG 1 cut(s) 540
SmlI CTYRAG 2 cut(s) 27, 492
SmoI CTYRAG 2 cut(s) 27, 492
Sse9I AATT 9 cut(s) 474, 616, 721, 839, 896, 910, 952, 990, 1036
SspMI CTAG 1 cut(s) 426
StyD4I CCNGG 3 cut(s) 73, 261, 757
StyI CCWWGG 1 cut(s) 425
TaaI ACNGT 5 cut(s) 225, 346, 673, 695, 742
TaqI TCGA 5 cut(s) 45, 185, 242, 282, 858
TasI AATT 9 cut(s) 474, 616, 721, 839, 896, 910, 952, 990, 1036
TatI WGTACW 2 cut(s) 375, 866
TauI GCSGC 8 cut(s) 94, 97, 100, 103, 131, 170, 173, 182
TfiI GAWTC 5 cut(s) 13, 323, 557, 995, 1069
Tru1I TTAA 3 cut(s) 585, 788, 951
Tru9I TTAA 3 cut(s) 585, 788, 951
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 4 cut(s) 110, 113, 146, 479
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 4 cut(s) 68, 507, 663, 720
TspGWI ACGGA 2 cut(s) 272, 347
VpaK11BI GGWCC 2 cut(s) 259, 976
VspI ATTAAT 1 cut(s) 951
XapI RAATTY 2 cut(s) 839, 910
XceI RCATGY 1 cut(s) 416
XmaJI CCTAGG 1 cut(s) 425
XmiI GTMKAC 1 cut(s) 227
XmnI GAANNNNTTC 1 cut(s) 288
XspI CTAG 1 cut(s) 426
ZrmI AGTACT 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.