Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006457

Physical Location & Seq

Genomic Coordinates Forward (+)

17849675 .. 17853255

Gene Structure 3581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028026

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGTGTCTGTGAACCCAAACCCAGCACCTCAGGGTTTCTACTTATTCGATCCCACCAACATGGGCCTCCCCGGCCTCAATTCCATGCCGCCGCCCACGACGCCTTCTACGACCACCACCACCACGTCGCCCGCTCCCCAAAACGCCGCGTCGTTGGCCGACGATCTGAGCAAGAAGATCCGGAAACCCTATACGATTACCAAGTCCAGGGAGAGCTGGACTGAACAGGAGCACGACAAGTTTCTAGAAGCTCTCCAGCTATTTGACCGCGACTGGAAGAAGATTGAAGCATTTATTGGCTCAAAAACGGTTATTCAGATACGTAGCCATGCACAAAAGTACTTTTTGAAGGTTCAGAAAAAAGGGACAAGCGAGCATGTACCTCCTCCTCGGCCAAAGAGGAAAGCAACTCATCCATACCCACAAAAAGCTCCTAAAGCTCCAGTAGCATCTCAAGTTGTTGTGCCATTTGAATCCTCATCTGCTTTGCTTGAACATGGATATGCTTACCAGCCAGACTCCTCATTTGTGCTTGGCACTCCAGCTACCAGTGCAAGTTTATCTTCCTGGAGTCATAGTTATGTGCCTCCAGTCAAATCATCACAAATAACTAAAGATGATGGAAAGCTAGCTGGTTCAACAGATGCACAAAACTCTTGCTACAGTAGCAGTAATGAAAGCAAGCCTACAACTTGGCTAATGGGTGAGACAGTTGGTCGAGCATGTCATCGCCAGCCACAGAGAGTTTTGCCAGATTTTGCTCAGGTGTATAAATTCATCGGCAGTGTTTTTGACCCCAATTCGACTAGTCATTTGGAGAGACTGAAACAAATGGACCCTATAAATTTGGAGACAGCACTTTTGTTGATGCGAAATCTATCCATTAATTTAACAAGTCCCGAGTTTGAGGATCATAGAAGGATACTTTTATCATATGAAACGAAATCGGAGAAAGCTAAACCTGAGAACAGTTGCAACTTTTCTTGCCATGGTAAATCGGAGAATGCCATCCTATCTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0042493 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

341

Amino Acids

37.7

Weight (kDa)

9.08

Isoelectric Point (pI)

50.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	70 - 115	6.9e-12	Myb-like DNA-binding domain
RVE6	PF24904	250 - 312	2e-35	REVEILLE 6-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01520 AT1G01520 AT1G01520 AT1G01520 AT1G01520 AT4G01280 AT4G01280
fragaria_vesca	FvH4_7g15140 FvH4_7g15140 FvH4_7g15140
malus_domestica	MD01G1070000.v1.1 MD07G1132500.v1.1
prunus_persica	Prupe.2G176200_v2.0.a1 Prupe.2G176200_v2.0.a1
pyrus_communis	pycom07g12930
rosa_chinensis	RchiOBHm_Chr1g0357331
rosa_laevigata	RLG00000028026
rosa_multiflora	Rmu_sc0003245.1_g000004
rosa_roxburghii	Rroxscaffold_4G00298820
rosa_rugosa	Rorug01G0256500
rosa_samantha	Rh1AG269700 Rh1BG237600 Rh1CG253900 Rh1DG265500
rosa_wichuraiana	Rw1G023900 Rw1G023950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	134
AccII	CGCG	2 cut(s)	149, 270
AccIII	TCCGGA	1 cut(s)	180
AciI	CCGC	5 cut(s)	89, 92, 132, 147, 268
AclWI	GGATC	3 cut(s)	44, 172, 918
AcoI	YGGCCR	2 cut(s)	156, 392
AcsI	RAATTY	2 cut(s)	773, 844
AcyI	GRCGYC	1 cut(s)	101
AfaI	GTAC	2 cut(s)	341, 381
AfiI	CCNNNNNNNGG	1 cut(s)	207
AgsI	TTSAA	5 cut(s)	287, 349, 473, 494, 639
AhdI	GACNNNNNGTC	1 cut(s)	714
AhlI	ACTAGT	1 cut(s)	806
AjiI	CACGTC	1 cut(s)	126
AjnI	CCWGG	2 cut(s)	206, 566
AjuI	GAANNNNNNNTTGG	2 cut(s)	279, 311
AluBI	AGCT	9 cut(s)	216, 251, 259, 431, 440, 545, 628, 632, 956
AluI	AGCT	9 cut(s)	216, 251, 259, 431, 440, 545, 628, 632, 956
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	3 cut(s)	701, 814, 845
AlwI	GGATC	3 cut(s)	44, 172, 918
Ama87I	CYCGRG	1 cut(s)	899
Aor13HI	TCCGGA	1 cut(s)	180
AoxI	GGCC	4 cut(s)	64, 73, 156, 392
ApoI	RAATTY	2 cut(s)	773, 844
ArsI	GACNNNNNNTTYG	6 cut(s)	509, 541, 796, 828, 844, 876
AseI	ATTAAT	1 cut(s)	885
AspS9I	GGNCC	2 cut(s)	64, 835
AsuC2I	CCSGG	1 cut(s)	72
AsuHPI	GGTGA	1 cut(s)	716
AsuNHI	GCTAGC	1 cut(s)	628
AvaI	CYCGRG	1 cut(s)	899
AvaII	GGWCC	1 cut(s)	835
AxyI	CCTNAGG	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	234
BccI	CCATC	2 cut(s)	614, 1016
BciT130I	CCWGG	2 cut(s)	208, 568
BciVI	GTATCC	1 cut(s)	915
BcnI	CCSGG	1 cut(s)	72
BcoDI	GTCTC	3 cut(s)	701, 814, 845
BcuI	ACTAGT	1 cut(s)	806
BfaI	CTAG	3 cut(s)	245, 629, 807
BfmI	CTRYAG	1 cut(s)	661
BfuI	GTATCC	1 cut(s)	915
BglI	GCCNNNNNGGC	1 cut(s)	72
BisI	GCNGC	3 cut(s)	89, 92, 147
BlsI	GCNGC	3 cut(s)	90, 93, 148
BmcAI	AGTACT	1 cut(s)	341
Bme1390I	CCNGG	3 cut(s)	72, 208, 568
Bme18I	GGWCC	1 cut(s)	835
BmeRI	GACNNNNNGTC	1 cut(s)	714
BmeT110I	CYCGRG	1 cut(s)	899
BmgBI	CACGTC	1 cut(s)	126
BmgT120I	GGNCC	2 cut(s)	64, 835
BmiI	GGNNCC	1 cut(s)	837
BmrFI	CCNGG	3 cut(s)	72, 208, 568
BmsI	GCATC	3 cut(s)	458, 634, 858
BmtI	GCTAGC	1 cut(s)	632
BpmI	CTGGAG	5 cut(s)	239, 426, 525, 573, 589
Bpu10I	CCTNAGC	1 cut(s)	762
BpuEI	CTTGAG	1 cut(s)	438
BpuMI	CCSGG	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	323
BsaHI	GRCGYC	1 cut(s)	101
BsaJI	CCNNGG	4 cut(s)	70, 207, 389, 988
BsaWI	WCCGGW	1 cut(s)	180
BsaXI	ACNNNNNCTCC	2 cut(s)	562, 592
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse1I	ACTGG	4 cut(s)	278, 443, 549, 590
Bse21I	CCTNAGG	1 cut(s)	30
BseAI	TCCGGA	1 cut(s)	180
BseBI	CCWGG	2 cut(s)	208, 568
BseDI	CCNNGG	4 cut(s)	70, 207, 389, 988
BseGI	GGATG	2 cut(s)	412, 1008
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMII	CTCAG	4 cut(s)	44, 158, 776, 954
BseNI	ACTGG	4 cut(s)	278, 443, 549, 590
BseRI	GAGGAG	3 cut(s)	375, 378, 511
BseYI	CCCAGC	1 cut(s)	22
Bsh1236I	CGCG	2 cut(s)	149, 270
BshFI	GGCC	4 cut(s)	66, 75, 158, 394
BsiHKAI	GWGCWC	1 cut(s)	234
BsiHKCI	CYCGRG	1 cut(s)	899
BsiSI	CCGG	2 cut(s)	72, 181
BslFI	GGGAC	2 cut(s)	379, 882
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmAI	GTCTC	3 cut(s)	701, 814, 845
BsmFI	GGGAC	2 cut(s)	379, 882
BsmI	GAATGC	1 cut(s)	1009
BsnI	GGCC	4 cut(s)	66, 75, 158, 394
BsoBI	CYCGRG	1 cut(s)	899
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp13I	TCCGGA	1 cut(s)	180
Bsp143I	GATC	4 cut(s)	49, 163, 177, 910
Bsp19I	CCATGG	1 cut(s)	988
BspACI	CCGC	5 cut(s)	89, 92, 132, 147, 268
BspANI	GGCC	4 cut(s)	66, 75, 158, 394
BspCNI	CTCAG	4 cut(s)	43, 159, 775, 955
BspEI	TCCGGA	1 cut(s)	180
BspFNI	CGCG	2 cut(s)	149, 270
BspLI	GGNNCC	1 cut(s)	837
BspOI	GCTAGC	1 cut(s)	632
BspPI	GGATC	3 cut(s)	44, 172, 918
BsrBI	CCGCTC	1 cut(s)	134
BsrI	ACTGG	4 cut(s)	278, 443, 549, 590
BssECI	CCNNGG	4 cut(s)	70, 207, 389, 988
BssMI	GATC	4 cut(s)	49, 163, 177, 910
BssNI	GRCGYC	1 cut(s)	101
BssT1I	CCWWGG	1 cut(s)	988
Bst2UI	CCWGG	2 cut(s)	208, 568
Bst4CI	ACNGT	4 cut(s)	310, 665, 712, 971
BstACI	GRCGYC	1 cut(s)	101
BstBAI	YACGTR	1 cut(s)	323
BstC8I	GCNNGC	5 cut(s)	132, 374, 630, 683, 734
BstDEI	CTNAG	5 cut(s)	30, 167, 762, 963, 1020
BstDSI	CCRYGG	1 cut(s)	988
BstF5I	GGATG	2 cut(s)	412, 1008
BstFNI	CGCG	2 cut(s)	149, 270
BstKTI	GATC	4 cut(s)	52, 166, 180, 913
BstMAI	GTCTC	3 cut(s)	701, 814, 845
BstMBI	GATC	4 cut(s)	49, 163, 177, 910
BstMWI	GCNNNNNNNGC	7 cut(s)	72, 100, 155, 437, 446, 551, 666
BstNI	CCWGG	2 cut(s)	208, 568
BstNSI	RCATGY	2 cut(s)	380, 726
BstSCI	CCNGG	3 cut(s)	70, 206, 566
BstSFI	CTRYAG	1 cut(s)	661
BstSNI	TACGTA	1 cut(s)	323
BstUI	CGCG	2 cut(s)	149, 270
BstX2I	RGATCY	1 cut(s)	177
BstXI	CCANNNNNNTGG	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	177
Bsu36I	CCTNAGG	1 cut(s)	30
BsuI	GTATCC	1 cut(s)	915
BsuRI	GGCC	4 cut(s)	66, 75, 158, 394
BtgI	CCRYGG	1 cut(s)	988
BtgZI	GCGATG	1 cut(s)	713
BtrI	CACGTC	1 cut(s)	126
BtsCI	GGATG	2 cut(s)	412, 1008
BtsI	GCAGTG	1 cut(s)	790
BtsIMutI	CAGTG	2 cut(s)	556, 790
Cac8I	GCNNGC	5 cut(s)	132, 374, 630, 683, 734
Cfr13I	GGNCC	2 cut(s)	64, 835
CseI	GACGC	2 cut(s)	109, 138
Csp6I	GTAC	2 cut(s)	340, 380
CviAII	CATG	7 cut(s)	61, 85, 329, 377, 497, 723, 989
CviQI	GTAC	2 cut(s)	340, 380
DdeI	CTNAG	5 cut(s)	30, 167, 762, 963, 1020
DpnI	GATC	4 cut(s)	51, 165, 179, 912
DpnII	GATC	4 cut(s)	49, 163, 177, 910
DriI	GACNNNNNGTC	1 cut(s)	714
EaeI	YGGCCR	2 cut(s)	156, 392
Eam1105I	GACNNNNNGTC	1 cut(s)	714
Eco105I	TACGTA	1 cut(s)	323
Eco130I	CCWWGG	1 cut(s)	988
Eco47I	GGWCC	1 cut(s)	835
Eco81I	CCTNAGG	1 cut(s)	30
Eco88I	CYCGRG	1 cut(s)	899
EcoRII	CCWGG	2 cut(s)	206, 566
EcoT14I	CCWWGG	1 cut(s)	988
ErhI	CCWWGG	1 cut(s)	988
FaeI	CATG	7 cut(s)	64, 88, 332, 380, 500, 726, 992
FalI	AAGNNNNNCTT	2 cut(s)	547, 579
FaqI	GGGAC	2 cut(s)	379, 882
FatI	CATG	7 cut(s)	60, 84, 328, 376, 496, 722, 988
FauI	CCCGC	1 cut(s)	139
FauNDI	CATATG	1 cut(s)	934
Fnu4HI	GCNGC	3 cut(s)	89, 92, 147
FokI	GGATG	2 cut(s)	399, 995
Fsp4HI	GCNGC	3 cut(s)	89, 92, 147
FspBI	CTAG	3 cut(s)	245, 629, 807
GluI	GCNGC	3 cut(s)	89, 92, 147
GsaI	CCCAGC	1 cut(s)	26
GsuI	CTGGAG	5 cut(s)	239, 426, 525, 573, 589
HaeIII	GGCC	4 cut(s)	66, 75, 158, 394
HapII	CCGG	2 cut(s)	72, 181
HgaI	GACGC	2 cut(s)	109, 138
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	7 cut(s)	64, 88, 332, 380, 500, 726, 992
HinfI	GANTC	3 cut(s)	473, 518, 571
HpaII	CCGG	2 cut(s)	72, 181
HphI	GGTGA	1 cut(s)	716
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	5 cut(s)	168, 318, 357, 949, 1000
Hpy188III	TCNNGA	3 cut(s)	181, 245, 899
Hpy8I	GTNNAC	1 cut(s)	13
Hpy99I	CGWCG	4 cut(s)	103, 130, 154, 164
HpyAV	CCTTC	3 cut(s)	114, 343, 912
HpyCH4III	ACNGT	4 cut(s)	310, 665, 712, 971
HpyCH4IV	ACGT	2 cut(s)	125, 322
HpyCH4V	TGCA	4 cut(s)	332, 554, 647, 975
HpyF10VI	GCNNNNNNNGC	7 cut(s)	72, 100, 155, 437, 446, 551, 666
HpyF3I	CTNAG	5 cut(s)	30, 167, 762, 963, 1020
HpySE526I	ACGT	2 cut(s)	125, 322
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	7 cut(s)	64, 88, 332, 380, 500, 726, 992
Kpn2I	TCCGGA	1 cut(s)	180
Kzo9I	GATC	4 cut(s)	49, 163, 177, 910
LmnI	GCTCC	4 cut(s)	139, 229, 436, 445
LweI	GCATC	3 cut(s)	458, 634, 858
MaeI	CTAG	3 cut(s)	245, 629, 807
MaeII	ACGT	2 cut(s)	125, 322
MalI	GATC	4 cut(s)	51, 165, 179, 912
MbiI	CCGCTC	1 cut(s)	134
MboI	GATC	4 cut(s)	49, 163, 177, 910
MboII	GAAGA	4 cut(s)	187, 289, 292, 555
MflI	RGATCY	1 cut(s)	177
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	5 cut(s)	79, 773, 799, 844, 886
MlyI	GAGTC	2 cut(s)	512, 580
MroI	TCCGGA	1 cut(s)	180
MseI	TTAA	2 cut(s)	885, 890
MslI	CAYNNNNRTG	3 cut(s)	59, 501, 579
MspI	CCGG	2 cut(s)	72, 181
MspR9I	CCNGG	3 cut(s)	72, 208, 568
Mva1269I	GAATGC	1 cut(s)	1009
MvaI	CCWGG	2 cut(s)	208, 568
MvnI	CGCG	2 cut(s)	149, 270
MwoI	GCNNNNNNNGC	7 cut(s)	72, 100, 155, 437, 446, 551, 666
NciI	CCSGG	1 cut(s)	72
NcoI	CCATGG	1 cut(s)	988
NdeI	CATATG	1 cut(s)	934
NdeII	GATC	4 cut(s)	49, 163, 177, 910
NheI	GCTAGC	1 cut(s)	628
NlaIII	CATG	7 cut(s)	64, 88, 332, 380, 500, 726, 992
NlaIV	GGNNCC	1 cut(s)	837
NmeAIII	GCCGAG	1 cut(s)	370
NspI	RCATGY	2 cut(s)	380, 726
PcsI	WCGNNNNNNNCGW	1 cut(s)	107
PctI	GAATGC	1 cut(s)	1009
PfeI	GAWTC	1 cut(s)	473
PfoI	TCCNGGA	1 cut(s)	566
PkrI	GCNGC	3 cut(s)	90, 93, 148
PleI	GAGTC	2 cut(s)	512, 579
PpsI	GAGTC	2 cut(s)	512, 579
Ppu21I	YACGTR	1 cut(s)	323
PshBI	ATTAAT	1 cut(s)	885
Psp6I	CCWGG	2 cut(s)	206, 566
PspFI	CCCAGC	1 cut(s)	22
PspGI	CCWGG	2 cut(s)	206, 566
PspN4I	GGNNCC	1 cut(s)	837
PspPI	GGNCC	2 cut(s)	64, 835
PsuI	RGATCY	1 cut(s)	177
RsaI	GTAC	2 cut(s)	341, 381
RsaNI	GTAC	2 cut(s)	340, 380
RseI	CAYNNNNRTG	3 cut(s)	59, 501, 579
SaqAI	TTAA	2 cut(s)	885, 890
SatI	GCNGC	3 cut(s)	89, 92, 147
Sau3AI	GATC	4 cut(s)	49, 163, 177, 910
Sau96I	GGNCC	2 cut(s)	64, 835
ScaI	AGTACT	1 cut(s)	341
SchI	GAGTC	2 cut(s)	512, 580
ScrFI	CCNGG	3 cut(s)	72, 208, 568
SduI	GDGCHC	1 cut(s)	234
SfaNI	GCATC	3 cut(s)	458, 634, 858
SfcI	CTRYAG	1 cut(s)	661
SfiI	GGCCNNNNNGGCC	1 cut(s)	72
SinI	GGWCC	1 cut(s)	835
SmiMI	CAYNNNNRTG	3 cut(s)	59, 501, 579
SmlI	CTYRAG	1 cut(s)	453
SmoI	CTYRAG	1 cut(s)	453
SnaBI	TACGTA	1 cut(s)	323
SpeI	ACTAGT	1 cut(s)	806
Sse9I	AATT	5 cut(s)	79, 773, 799, 844, 886
SsiI	CCGC	5 cut(s)	89, 92, 132, 147, 268
SspMI	CTAG	3 cut(s)	245, 629, 807
StyD4I	CCNGG	3 cut(s)	70, 206, 566
StyI	CCWWGG	1 cut(s)	988
TaaI	ACNGT	4 cut(s)	310, 665, 712, 971
TaiI	ACGT	2 cut(s)	128, 325
TaqI	TCGA	3 cut(s)	48, 718, 803
TasI	AATT	5 cut(s)	79, 773, 799, 844, 886
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	3 cut(s)	91, 94, 149
TfiI	GAWTC	1 cut(s)	473
Tru1I	TTAA	2 cut(s)	885, 890
Tru9I	TTAA	2 cut(s)	885, 890
TscAI	CASTG	2 cut(s)	556, 790
TspDTI	ATGAA	3 cut(s)	690, 766, 951
TspRI	CASTG	2 cut(s)	556, 790
VpaK11BI	GGWCC	1 cut(s)	835
VspI	ATTAAT	1 cut(s)	885
XapI	RAATTY	2 cut(s)	773, 844
XbaI	TCTAGA	1 cut(s)	244
XceI	RCATGY	2 cut(s)	380, 726
XspI	CTAG	3 cut(s)	245, 629, 807
ZrmI	AGTACT	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.