Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011814

Physical Location & Seq

Genomic Coordinates Forward (+)

267993 .. 269819

Gene Structure 1827 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G01720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTCAGAATTATTACAGTTGCCTCCAGGTTTCCGATTTCACCCTACCGATGAAGAGCTTGTCATGCACTATCTCTGCCGCAAATGTGCCTCTCAGTCCATCGCCGTTCCGATCATCGCTGAGATCGATCTCTACAAATACGATCCATGGGAGCTTCCTGGTTTAGCCTTGTATGGTGAGAAGGAATGGTACTTCTTCTCTCCCAGGGACAGAAAATATCCCAACGGTTCGCGTCCTAACCGGTCCGCTGGTTCTGGTTACTGGAAAGCTACCGGAGCTGATAAACCGATCGGACTACCTAAACCGGTCGGAATTAAGAAAGCTCTTGTTTTCTACGCCGGCAAAGCTCCAAAGGGAGAGAAAACCAATTGGATCATGCACGAGTACCGTCTCGCCGACGTTGACCGGTCCGTTCGCAAGAAGAAGAATAGTCTCAGGCTGGATGATTGGGTTCTCTGCCGGATTTACAACAAAAAAGGAGCTACCGAGAGGCGGGGACCACCGCCTCCGGTTGTTTACGGCGACGAAATCATGGAGGAGAAGCCGAAGGTGACGGAGATGGTTATGCCTCCGCCGCCGCAACAGACAAGTGAGTTCGCGTATTTCGACACGTCGGATTCGGTGCCGAAGCTGCATACTACGGATTCGAGTTGCTCGGAGCAGGTGGTGTCGCCGGAGTTCACGAGCGAGGTTCAGAGCGAGCCCAAGTGGAAAGATTGGTCGGCCGTAAGTAATGACAATAACAATACCCTTGATTTTGGGTTTAATTACATTGATGCCACCGTGGATAACGCGTTTGGAGGAGGAGGGAGTAGTAATCAGATGTTTCCGCTACAGGATATGTTCATGTACATGCAGAAGCCTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002831 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009611 GO:0009628 GO:0009787 GO:0009788 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009968 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0047484 GO:0048316 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1900150 GO:1901000 GO:1901002 GO:1901363 GO:1901419 GO:1901420 GO:1902584 GO:1902680 GO:1903506 GO:1903508 GO:1905623 GO:1905957 GO:1905958 GO:2000024 GO:2000026 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

289

Amino Acids

32.92

Weight (kDa)

6.15

Isoelectric Point (pI)

54.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	8 - 131	5.4e-49	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01720 AT1G77450
fragaria_vesca	FvH4_2g27430
malus_domestica	MD00G1028600.v1.1 MD15G1344900.v1.1
prunus_persica	Prupe.1G493100_v2.0.a1
pyrus_communis	pycom15g30950
rosa_chinensis	RchiOBHm_Chr6g0296281
rosa_laevigata	RLG00000011710
rosa_multiflora	Rmu_sc0004708.1_g000008 Rmu_sc0007700.1_g000001
rosa_roxburghii	Rroxscaffold_7G00171670 Rroxscaffold_7G00178400
rosa_rugosa	Rorug06G0260600
rosa_samantha	Rh6AG372300 Rh6BG380300 Rh6CG385700 Rh6DG373000
rosa_wichuraiana	Rw6G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	652
Acc36I	ACCTGC	1 cut(s)	652
AccB1I	GGYRCC	1 cut(s)	622
AccII	CGCG	3 cut(s)	232, 599, 794
AciI	CCGC	8 cut(s)	79, 246, 493, 503, 572, 575, 578, 830
AclWI	GGATC	2 cut(s)	137, 380
AcoI	YGGCCR	1 cut(s)	723
AfaI	GTAC	3 cut(s)	191, 386, 851
AfiI	CCNNNNNNNGG	1 cut(s)	492
AflIII	ACRYGT	2 cut(s)	609, 792
AgeI	ACCGGT	3 cut(s)	240, 304, 405
AjiI	CACGTC	1 cut(s)	612
AjnI	CCWGG	3 cut(s)	25, 157, 203
AluBI	AGCT	8 cut(s)	58, 154, 269, 278, 323, 347, 482, 631
AluI	AGCT	8 cut(s)	58, 154, 269, 278, 323, 347, 482, 631
Alw26I	GTCTC	2 cut(s)	395, 437
AlwI	GGATC	2 cut(s)	137, 380
AoxI	GGCC	1 cut(s)	723
ApeKI	GCWGC	1 cut(s)	631
AsiGI	ACCGGT	3 cut(s)	240, 304, 405
AspS9I	GGNCC	3 cut(s)	243, 408, 497
AsuHPI	GGTGA	3 cut(s)	32, 188, 562
AvaII	GGWCC	3 cut(s)	243, 408, 497
BanI	GGYRCC	1 cut(s)	622
BanII	GRGCYC	1 cut(s)	705
BarI	GAAGNNNNNNTAC	2 cut(s)	173, 205
BauI	CACGAG	2 cut(s)	380, 682
BbvI	GCAGC	1 cut(s)	618
BccI	CCATC	2 cut(s)	107, 553
BceAI	ACGGC	3 cut(s)	89, 535, 710
BciT130I	CCWGG	3 cut(s)	27, 159, 205
BcoDI	GTCTC	2 cut(s)	395, 437
BfaI	CTAG	1 cut(s)	868
BfmI	CTRYAG	1 cut(s)	833
BfuAI	ACCTGC	1 cut(s)	652
BisI	GCNGC	4 cut(s)	79, 575, 578, 632
BlsI	GCNGC	4 cut(s)	80, 576, 579, 633
Bme1390I	CCNGG	3 cut(s)	27, 159, 205
Bme18I	GGWCC	3 cut(s)	243, 408, 497
BmgBI	CACGTC	1 cut(s)	612
BmgT120I	GGNCC	3 cut(s)	243, 408, 497
BmiI	GGNNCC	2 cut(s)	498, 624
BmrFI	CCNGG	3 cut(s)	27, 159, 205
BmsI	GCATC	1 cut(s)	766
BpmI	CTGGAG	1 cut(s)	9
Bsa29I	ATCGAT	1 cut(s)	126
BsaJI	CCNNGG	4 cut(s)	146, 203, 204, 783
BsaWI	WCCGGW	5 cut(s)	240, 272, 304, 405, 508
Bsc4I	CCNNNNNNNGG	1 cut(s)	492
Bse118I	RCCGGY	4 cut(s)	240, 304, 338, 405
Bse1I	ACTGG	1 cut(s)	266
BseBI	CCWGG	3 cut(s)	27, 159, 205
BseCI	ATCGAT	1 cut(s)	126
BseDI	CCNNGG	4 cut(s)	146, 203, 204, 783
BseGI	GGATG	1 cut(s)	448
BseLI	CCNNNNNNNGG	1 cut(s)	492
BseMII	CTCAG	3 cut(s)	107, 111, 448
BseNI	ACTGG	1 cut(s)	266
BseRI	GAGGAG	3 cut(s)	551, 816, 819
BseX3I	CGGCCG	1 cut(s)	723
BseXI	GCAGC	1 cut(s)	618
Bsh1236I	CGCG	3 cut(s)	232, 599, 794
Bsh1285I	CGRYCG	3 cut(s)	291, 309, 726
BshFI	GGCC	1 cut(s)	725
BshNI	GGYRCC	1 cut(s)	622
BshTI	ACCGGT	3 cut(s)	240, 304, 405
BshVI	ATCGAT	1 cut(s)	126
BsiEI	CGRYCG	3 cut(s)	291, 309, 726
BsiSI	CCGG	8 cut(s)	241, 273, 305, 339, 406, 460, 509, 674
BslFI	GGGAC	2 cut(s)	221, 510
BslI	CCNNNNNNNGG	1 cut(s)	492
BsmAI	GTCTC	2 cut(s)	395, 437
BsmBI	CGTCTC	1 cut(s)	395
BsmFI	GGGAC	2 cut(s)	221, 510
BsnI	GGCC	1 cut(s)	725
Bsp1286I	GDGCHC	1 cut(s)	705
Bsp1407I	TGTACA	1 cut(s)	849
Bsp143I	GATC	6 cut(s)	111, 123, 127, 142, 288, 372
Bsp19I	CCATGG	1 cut(s)	146
BspACI	CCGC	8 cut(s)	79, 246, 493, 503, 572, 575, 578, 830
BspANI	GGCC	1 cut(s)	725
BspCNI	CTCAG	3 cut(s)	106, 112, 447
BspDI	ATCGAT	1 cut(s)	126
BspFNI	CGCG	3 cut(s)	232, 599, 794
BspLI	GGNNCC	2 cut(s)	498, 624
BspMI	ACCTGC	1 cut(s)	652
BspPI	GGATC	2 cut(s)	137, 380
BspQI	GCTCTTC	1 cut(s)	48
BspT107I	GGYRCC	1 cut(s)	622
BsrFI	RCCGGY	4 cut(s)	240, 304, 338, 405
BsrGI	TGTACA	1 cut(s)	849
BsrI	ACTGG	1 cut(s)	266
BssAI	RCCGGY	4 cut(s)	240, 304, 338, 405
BssECI	CCNNGG	4 cut(s)	146, 203, 204, 783
BssMI	GATC	6 cut(s)	111, 123, 127, 142, 288, 372
BssSI	CACGAG	2 cut(s)	380, 682
BssT1I	CCWWGG	1 cut(s)	146
Bst2BI	CACGAG	2 cut(s)	380, 682
Bst2UI	CCWGG	3 cut(s)	27, 159, 205
Bst4CI	ACNGT	4 cut(s)	18, 227, 389, 784
Bst6I	CTCTTC	1 cut(s)	48
BstAUI	TGTACA	1 cut(s)	849
BstC8I	GCNNGC	2 cut(s)	340, 701
BstDEI	CTNAG	3 cut(s)	93, 120, 434
BstDSI	CCRYGG	2 cut(s)	146, 783
BstF5I	GGATG	1 cut(s)	448
BstFNI	CGCG	3 cut(s)	232, 599, 794
BstKTI	GATC	6 cut(s)	114, 126, 130, 145, 291, 375
BstMAI	GTCTC	2 cut(s)	395, 437
BstMBI	GATC	6 cut(s)	111, 123, 127, 142, 288, 372
BstMCI	CGRYCG	3 cut(s)	291, 309, 726
BstMWI	GCNNNNNNNGC	5 cut(s)	64, 275, 344, 574, 631
BstNI	CCWGG	3 cut(s)	27, 159, 205
BstNSI	RCATGY	1 cut(s)	856
BstSCI	CCNGG	3 cut(s)	25, 157, 203
BstSFI	CTRYAG	1 cut(s)	833
BstUI	CGCG	3 cut(s)	232, 599, 794
BstV1I	GCAGC	1 cut(s)	618
BstZI	CGGCCG	1 cut(s)	723
Bsu15I	ATCGAT	1 cut(s)	126
BsuRI	GGCC	1 cut(s)	725
BsuTUI	ATCGAT	1 cut(s)	126
BtgI	CCRYGG	2 cut(s)	146, 783
BtgZI	GCGATG	2 cut(s)	85, 100
BtrI	CACGTC	1 cut(s)	612
BtsCI	GGATG	1 cut(s)	448
BveI	ACCTGC	1 cut(s)	652
Cac8I	GCNNGC	2 cut(s)	340, 701
Cfr10I	RCCGGY	4 cut(s)	240, 304, 338, 405
Cfr13I	GGNCC	3 cut(s)	243, 408, 497
ClaI	ATCGAT	1 cut(s)	126
CpoI	CGGWCCG	2 cut(s)	243, 408
CseI	GACGC	1 cut(s)	221
Csp6I	GTAC	3 cut(s)	190, 385, 850
CspAI	ACCGGT	3 cut(s)	240, 304, 405
CspI	CGGWCCG	2 cut(s)	243, 408
CviAII	CATG	6 cut(s)	64, 147, 376, 532, 847, 853
CviQI	GTAC	3 cut(s)	190, 385, 850
DdeI	CTNAG	3 cut(s)	93, 120, 434
DpnI	GATC	6 cut(s)	113, 125, 129, 144, 290, 374
DpnII	GATC	6 cut(s)	111, 123, 127, 142, 288, 372
EaeI	YGGCCR	1 cut(s)	723
EagI	CGGCCG	1 cut(s)	723
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
EciI	GGCGGA	1 cut(s)	561
EclXI	CGGCCG	1 cut(s)	723
Eco130I	CCWWGG	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	705
Eco47I	GGWCC	3 cut(s)	243, 408, 497
Eco52I	CGGCCG	1 cut(s)	723
EcoRII	CCWGG	3 cut(s)	25, 157, 203
EcoT14I	CCWWGG	1 cut(s)	146
EcoT38I	GRGCYC	1 cut(s)	705
ErhI	CCWWGG	1 cut(s)	146
Esp3I	CGTCTC	1 cut(s)	395
FaeI	CATG	6 cut(s)	67, 150, 379, 535, 850, 856
FaqI	GGGAC	2 cut(s)	221, 510
FatI	CATG	6 cut(s)	63, 146, 375, 531, 846, 852
FauI	CCCGC	1 cut(s)	486
Fnu4HI	GCNGC	4 cut(s)	79, 575, 578, 632
FokI	GGATG	1 cut(s)	455
FriOI	GRGCYC	1 cut(s)	705
Fsp4HI	GCNGC	4 cut(s)	79, 575, 578, 632
FspBI	CTAG	1 cut(s)	868
GluI	GCNGC	4 cut(s)	79, 575, 578, 632
GsuI	CTGGAG	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	725
HapII	CCGG	8 cut(s)	241, 273, 305, 339, 406, 460, 509, 674
HgaI	GACGC	1 cut(s)	221
Hin1II	CATG	6 cut(s)	67, 150, 379, 535, 850, 856
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	2 cut(s)	617, 644
HpaII	CCGG	8 cut(s)	241, 273, 305, 339, 406, 460, 509, 674
HphI	GGTGA	3 cut(s)	32, 188, 562
Hpy166II	GTNNAC	3 cut(s)	403, 517, 681
Hpy188I	TCNGA	9 cut(s)	7, 35, 111, 293, 311, 616, 658, 696, 822
Hpy188III	TCNNGA	1 cut(s)	682
Hpy8I	GTNNAC	3 cut(s)	403, 517, 681
Hpy99I	CGWCG	3 cut(s)	401, 527, 616
HpyAV	CCTTC	2 cut(s)	175, 541
HpyCH4III	ACNGT	4 cut(s)	18, 227, 389, 784
HpyCH4IV	ACGT	2 cut(s)	399, 611
HpyCH4V	TGCA	4 cut(s)	67, 379, 634, 856
HpyF10VI	GCNNNNNNNGC	5 cut(s)	64, 275, 344, 574, 631
HpyF3I	CTNAG	3 cut(s)	93, 120, 434
HpySE526I	ACGT	2 cut(s)	399, 611
Hsp92II	CATG	6 cut(s)	67, 150, 379, 535, 850, 856
KroI	GCCGGC	1 cut(s)	338
KroNI	GCCGGC	1 cut(s)	340
Kzo9I	GATC	6 cut(s)	111, 123, 127, 142, 288, 372
LguI	GCTCTTC	1 cut(s)	48
LmnI	GCTCC	5 cut(s)	151, 275, 352, 479, 658
Lsp1109I	GCAGC	1 cut(s)	618
LweI	GCATC	1 cut(s)	766
MaeI	CTAG	1 cut(s)	868
MaeII	ACGT	2 cut(s)	399, 611
MaeIII	GTNAC	2 cut(s)	257, 550
MalI	GATC	6 cut(s)	113, 125, 129, 144, 290, 374
MboI	GATC	6 cut(s)	111, 123, 127, 142, 288, 372
MboII	GAAGA	4 cut(s)	65, 187, 433, 436
MfeI	CAATTG	1 cut(s)	367
MhlI	GDGCHC	1 cut(s)	705
MluCI	AATT	4 cut(s)	8, 312, 367, 766
MluI	ACGCGT	1 cut(s)	792
MmeI	TCCRAC	2 cut(s)	289, 594
MroNI	GCCGGC	1 cut(s)	338
MseI	TTAA	2 cut(s)	315, 765
MslI	CAYNNNNRTG	1 cut(s)	851
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	8 cut(s)	241, 273, 305, 339, 406, 460, 509, 674
MspR9I	CCNGG	3 cut(s)	27, 159, 205
MunI	CAATTG	1 cut(s)	367
MvaI	CCWGG	3 cut(s)	27, 159, 205
MvnI	CGCG	3 cut(s)	232, 599, 794
MwoI	GCNNNNNNNGC	5 cut(s)	64, 275, 344, 574, 631
NaeI	GCCGGC	1 cut(s)	340
NcoI	CCATGG	1 cut(s)	146
NdeII	GATC	6 cut(s)	111, 123, 127, 142, 288, 372
NgoMIV	GCCGGC	1 cut(s)	338
NlaIII	CATG	6 cut(s)	67, 150, 379, 535, 850, 856
NlaIV	GGNNCC	2 cut(s)	498, 624
NmuCI	GTSAC	1 cut(s)	550
NspI	RCATGY	1 cut(s)	856
PaqCI	CACCTGC	1 cut(s)	652
PasI	CCCWGGG	1 cut(s)	204
PciSI	GCTCTTC	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 603
PdiI	GCCGGC	1 cut(s)	340
PfeI	GAWTC	2 cut(s)	617, 644
PinAI	ACCGGT	3 cut(s)	240, 304, 405
PkrI	GCNGC	4 cut(s)	80, 576, 579, 633
Ple19I	CGATCG	1 cut(s)	291
Psp6I	CCWGG	3 cut(s)	25, 157, 203
PspGI	CCWGG	3 cut(s)	25, 157, 203
PspN4I	GGNNCC	2 cut(s)	498, 624
PspPI	GGNCC	3 cut(s)	243, 408, 497
PvuI	CGATCG	1 cut(s)	291
RsaI	GTAC	3 cut(s)	191, 386, 851
RsaNI	GTAC	3 cut(s)	190, 385, 850
RseI	CAYNNNNRTG	1 cut(s)	851
Rsr2I	CGGWCCG	2 cut(s)	243, 408
RsrII	CGGWCCG	2 cut(s)	243, 408
SapI	GCTCTTC	1 cut(s)	48
SaqAI	TTAA	2 cut(s)	315, 765
SatI	GCNGC	4 cut(s)	79, 575, 578, 632
Sau3AI	GATC	6 cut(s)	111, 123, 127, 142, 288, 372
Sau96I	GGNCC	3 cut(s)	243, 408, 497
ScrFI	CCNGG	3 cut(s)	27, 159, 205
SduI	GDGCHC	1 cut(s)	705
SfaNI	GCATC	1 cut(s)	766
SfcI	CTRYAG	1 cut(s)	833
SinI	GGWCC	3 cut(s)	243, 408, 497
SmiMI	CAYNNNNRTG	1 cut(s)	851
Sse9I	AATT	4 cut(s)	8, 312, 367, 766
SsiI	CCGC	8 cut(s)	79, 246, 493, 503, 572, 575, 578, 830
SspMI	CTAG	1 cut(s)	868
StyD4I	CCNGG	3 cut(s)	25, 157, 203
StyI	CCWWGG	1 cut(s)	146
TaaI	ACNGT	4 cut(s)	18, 227, 389, 784
TaiI	ACGT	2 cut(s)	402, 614
TaqI	TCGA	3 cut(s)	126, 606, 647
TasI	AATT	4 cut(s)	8, 312, 367, 766
TatI	WGTACW	1 cut(s)	849
TauI	GCSGC	3 cut(s)	81, 577, 580
TfiI	GAWTC	2 cut(s)	617, 644
Tru1I	TTAA	2 cut(s)	315, 765
Tru9I	TTAA	2 cut(s)	315, 765
TseFI	GTSAC	1 cut(s)	550
TseI	GCWGC	1 cut(s)	631
Tsp45I	GTSAC	1 cut(s)	550
TspDTI	ATGAA	2 cut(s)	66, 835
TspGWI	ACGGA	3 cut(s)	400, 569, 656
VpaK11BI	GGWCC	3 cut(s)	243, 408, 497
XceI	RCATGY	1 cut(s)	856
XspI	CTAG	1 cut(s)	868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.