Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0011814

Physical Location & Seq

Genomic Coordinates Forward (+)

4685045 .. 4689823

Gene Structure 4779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1028600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTTGTCCACCGATTTCCAGCTATCACTAGGATTCAGGTTCCACCTGACGGAAGATGAGCTCATGAAGCACTACCTCTACCGGAAATATGTGTCACAGCCAATATCCGTCCTGATCATCGCCAAAATTGACCCTTACAAATACGACCCCTGGGAGCTCCCAAGTTTGGTGTTGTACGGAGAGAAAGAGTGGTATTTCTTTTCGCCAAGGGATCGGAAGTACCCGAACGGTTCGAGGCCGAACCGGGCGGCGGGAAGCGGTTACTGGAAGGTGACCGGTGCCGATAAGCCGATTGGGCATCCGAAACCAATGGGGATTAAGAAAGCTCTGGTTCTGTGCCGAATATACAACAAGAAGGGCATCGTGGAGAAGCAGCAGCCTGAGCAGCAAGAAAAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002831 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009611 GO:0009628 GO:0009787 GO:0009788 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009968 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0047484 GO:0048316 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1900150 GO:1901000 GO:1901002 GO:1901363 GO:1901419 GO:1901420 GO:1902584 GO:1902680 GO:1903506 GO:1903508 GO:1905623 GO:1905957 GO:1905958 GO:2000024 GO:2000026 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

134

Amino Acids

15.63

Weight (kDa)

9.43

Isoelectric Point (pI)

25.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	11 - 114	4.4e-33	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01720 AT1G77450
fragaria_vesca	FvH4_2g27430
malus_domestica	MD00G1028600.v1.1 MD15G1344900.v1.1
prunus_persica	Prupe.1G493100_v2.0.a1
pyrus_communis	pycom15g30950
rosa_chinensis	RchiOBHm_Chr6g0296281
rosa_laevigata	RLG00000011710
rosa_multiflora	Rmu_sc0004708.1_g000008 Rmu_sc0007700.1_g000001
rosa_roxburghii	Rroxscaffold_7G00171670 Rroxscaffold_7G00178400
rosa_rugosa	Rorug06G0260600
rosa_samantha	Rh6AG372300 Rh6BG380300 Rh6CG385700 Rh6DG373000
rosa_wichuraiana	Rw6G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	278
AciI	CCGC	3 cut(s)	248, 251, 258
AclWI	GGATC	1 cut(s)	219
AfaI	GTAC	2 cut(s)	176, 221
AfiI	CCNNNNNNNGG	3 cut(s)	49, 166, 250
AgeI	ACCGGT	1 cut(s)	275
AjnI	CCWGG	1 cut(s)	149
AluBI	AGCT	4 cut(s)	22, 61, 157, 326
AluI	AGCT	4 cut(s)	22, 61, 157, 326
Alw21I	GWGCWC	2 cut(s)	63, 159
AlwI	GGATC	1 cut(s)	219
AoxI	GGCC	1 cut(s)	236
ApeKI	GCWGC	3 cut(s)	373, 376, 385
AsiGI	ACCGGT	1 cut(s)	275
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	283
BanI	GGYRCC	1 cut(s)	278
BanII	GRGCYC	2 cut(s)	63, 159
Bbv12I	GWGCWC	2 cut(s)	63, 159
BbvI	GCAGC	3 cut(s)	385, 388, 397
BciT130I	CCWGG	1 cut(s)	151
BclI	TGATCA	1 cut(s)	114
BcnI	CCSGG	1 cut(s)	245
BfaI	CTAG	1 cut(s)	29
BglI	GCCNNNNNGGC	1 cut(s)	295
BisI	GCNGC	4 cut(s)	249, 374, 377, 386
BlsI	GCNGC	4 cut(s)	250, 375, 378, 387
Bme1390I	CCNGG	2 cut(s)	151, 245
BmiI	GGNNCC	2 cut(s)	41, 280
BmrFI	CCNGG	2 cut(s)	151, 245
BmsI	GCATC	2 cut(s)	307, 369
Bpu10I	CCTNAGC	1 cut(s)	381
BpuMI	CCSGG	1 cut(s)	245
BsaJI	CCNNGG	3 cut(s)	149, 150, 206
BsaWI	WCCGGW	2 cut(s)	81, 275
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 166, 250
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	269
BseBI	CCWGG	1 cut(s)	151
BseDI	CCNNGG	3 cut(s)	149, 150, 206
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	3 cut(s)	49, 166, 250
BseMII	CTCAG	1 cut(s)	372
BseNI	ACTGG	1 cut(s)	269
BseXI	GCAGC	3 cut(s)	385, 388, 397
BshFI	GGCC	1 cut(s)	238
BshNI	GGYRCC	1 cut(s)	278
BshTI	ACCGGT	1 cut(s)	275
BsiHKAI	GWGCWC	2 cut(s)	63, 159
BsiSI	CCGG	3 cut(s)	82, 244, 276
BslI	CCNNNNNNNGG	3 cut(s)	49, 166, 250
BsnI	GGCC	1 cut(s)	238
Bsp1286I	GDGCHC	2 cut(s)	63, 159
Bsp143I	GATC	2 cut(s)	114, 211
BspACI	CCGC	3 cut(s)	248, 251, 258
BspANI	GGCC	1 cut(s)	238
BspCNI	CTCAG	1 cut(s)	373
BspHI	TCATGA	1 cut(s)	63
BspLI	GGNNCC	2 cut(s)	41, 280
BspPI	GGATC	1 cut(s)	219
BspT107I	GGYRCC	1 cut(s)	278
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	269
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	3 cut(s)	149, 150, 206
BssMI	GATC	2 cut(s)	114, 211
BssT1I	CCWWGG	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	1 cut(s)	230
BstDEI	CTNAG	1 cut(s)	381
BstEII	GGTNACC	1 cut(s)	271
BstF5I	GGATG	1 cut(s)	298
BstKTI	GATC	2 cut(s)	117, 214
BstMBI	GATC	2 cut(s)	114, 211
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 295, 382, 385
BstNI	CCWGG	1 cut(s)	151
BstPI	GGTNACC	1 cut(s)	271
BstSCI	CCNGG	2 cut(s)	149, 243
BstV1I	GCAGC	3 cut(s)	385, 388, 397
BsuRI	GGCC	1 cut(s)	238
BtgZI	GCGATG	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	298
CciI	TCATGA	1 cut(s)	63
Cfr10I	RCCGGY	1 cut(s)	275
Csp6I	GTAC	2 cut(s)	175, 220
CspAI	ACCGGT	1 cut(s)	275
CviAII	CATG	1 cut(s)	64
CviJI	RGCY	8 cut(s)	22, 61, 100, 157, 238, 289, 326, 379
CviKI_1	RGCY	8 cut(s)	22, 61, 100, 157, 238, 289, 326, 379
CviQI	GTAC	2 cut(s)	175, 220
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	2 cut(s)	116, 213
DpnII	GATC	2 cut(s)	114, 211
Ecl136II	GAGCTC	2 cut(s)	61, 157
Eco130I	CCWWGG	1 cut(s)	206
Eco24I	GRGCYC	2 cut(s)	63, 159
Eco53kI	GAGCTC	2 cut(s)	61, 157
Eco91I	GGTNACC	1 cut(s)	271
EcoICRI	GAGCTC	2 cut(s)	61, 157
EcoO65I	GGTNACC	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	206
EcoT38I	GRGCYC	2 cut(s)	63, 159
ErhI	CCWWGG	1 cut(s)	206
FaeI	CATG	1 cut(s)	67
FaiI	YATR	3 cut(s)	65, 90, 346
FatI	CATG	1 cut(s)	63
FauI	CCCGC	1 cut(s)	244
FbaI	TGATCA	1 cut(s)	114
Fnu4HI	GCNGC	4 cut(s)	249, 374, 377, 386
FokI	GGATG	1 cut(s)	285
FriOI	GRGCYC	2 cut(s)	63, 159
Fsp4HI	GCNGC	4 cut(s)	249, 374, 377, 386
FspBI	CTAG	1 cut(s)	29
GluI	GCNGC	4 cut(s)	249, 374, 377, 386
HaeIII	GGCC	1 cut(s)	238
HapII	CCGG	3 cut(s)	82, 244, 276
Hin1II	CATG	1 cut(s)	67
HinfI	GANTC	1 cut(s)	33
HpaII	CCGG	3 cut(s)	82, 244, 276
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	2 cut(s)	216, 303
Hpy188III	TCNNGA	2 cut(s)	64, 112
Hpy8I	GTNNAC	1 cut(s)	9
HpyAV	CCTTC	2 cut(s)	262, 349
HpyCH4III	ACNGT	1 cut(s)	230
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 295, 382, 385
HpyF3I	CTNAG	1 cut(s)	381
Hsp92II	CATG	1 cut(s)	67
Ksp22I	TGATCA	1 cut(s)	114
Kzo9I	GATC	2 cut(s)	114, 211
LmnI	GCTCC	2 cut(s)	154, 162
Lsp1109I	GCAGC	3 cut(s)	385, 388, 397
LweI	GCATC	2 cut(s)	307, 369
MaeI	CTAG	1 cut(s)	29
MaeIII	GTNAC	3 cut(s)	93, 260, 271
MalI	GATC	2 cut(s)	116, 213
MboI	GATC	2 cut(s)	114, 211
MboII	GAAGA	1 cut(s)	65
MhlI	GDGCHC	2 cut(s)	63, 159
MluCI	AATT	1 cut(s)	126
MnlI	CCTC	2 cut(s)	86, 228
MseI	TTAA	1 cut(s)	318
MspI	CCGG	3 cut(s)	82, 244, 276
MspR9I	CCNGG	2 cut(s)	151, 245
MvaI	CCWGG	1 cut(s)	151
MwoI	GCNNNNNNNGC	4 cut(s)	67, 295, 382, 385
NciI	CCSGG	1 cut(s)	245
NdeII	GATC	2 cut(s)	114, 211
NlaIII	CATG	1 cut(s)	67
NlaIV	GGNNCC	2 cut(s)	41, 280
NmuCI	GTSAC	2 cut(s)	93, 271
PagI	TCATGA	1 cut(s)	63
PasI	CCCWGGG	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	33
PinAI	ACCGGT	1 cut(s)	275
PkrI	GCNGC	4 cut(s)	250, 375, 378, 387
Psp124BI	GAGCTC	2 cut(s)	63, 159
Psp6I	CCWGG	1 cut(s)	149
PspEI	GGTNACC	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	2 cut(s)	41, 280
RsaI	GTAC	2 cut(s)	176, 221
RsaNI	GTAC	2 cut(s)	175, 220
SacI	GAGCTC	2 cut(s)	63, 159
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	4 cut(s)	249, 374, 377, 386
Sau3AI	GATC	2 cut(s)	114, 211
ScrFI	CCNGG	2 cut(s)	151, 245
SduI	GDGCHC	2 cut(s)	63, 159
SetI	ASST	8 cut(s)	24, 41, 48, 63, 78, 159, 273, 328
SfaNI	GCATC	2 cut(s)	307, 369
Sse9I	AATT	1 cut(s)	126
SsiI	CCGC	3 cut(s)	248, 251, 258
SspMI	CTAG	1 cut(s)	29
SstI	GAGCTC	2 cut(s)	63, 159
StyD4I	CCNGG	2 cut(s)	149, 243
StyI	CCWWGG	1 cut(s)	206
TaaI	ACNGT	1 cut(s)	230
TaqI	TCGA	1 cut(s)	233
TasI	AATT	1 cut(s)	126
TauI	GCSGC	1 cut(s)	251
TfiI	GAWTC	1 cut(s)	33
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseFI	GTSAC	2 cut(s)	93, 271
TseI	GCWGC	3 cut(s)	373, 376, 385
Tsp45I	GTSAC	2 cut(s)	93, 271
TspDTI	ATGAA	1 cut(s)	80
TspGWI	ACGGA	3 cut(s)	65, 97, 192
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.