Rh6CG385700
NAC Family

NAC domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
57187747 .. 57189646
1900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG385700.1

Sequence Viewer

Length: 870 bp
ATGTCTTCCTCGGAGTTACAGTTACCCCCAGGCTTCCGGTTCCACCCCACCGACGAAGAGCTCGTCAAGCACTACCTCTGCCGGAAATGCCAGTCCCAACCGATCTCTGTTCCTATCATCGCCGAAATCGATCTGTACAAATATGACCCCTGGGAGCTCCCTGGTTTGGCTCTGTACGGAGAGAAGGAGTGGTATTTCTTTTCGCCGAGGGACCGGAAATACCCGAACGGTTCGAGGCCGAACCGGGCTGCCGGGAGCGGGTACTGGAAGGCGACCGGAGCCGATAAGCCGATCGGGCTTCCGAAGCCGGTCGGGATTAAAAAGGCTTTGGTATTCTACGCCGGAAAAGCCCCGAGAGGAGAGAAGACCAATTGGATCATGCATGAGTATCGCCTCGCCGACGTGGATCGAACGCCTCGCAAGAGAAACAGCTTAAGGTTGGACGATTGGGTTCTGTGCCGCATATACAACAAAAAGGGGACGGCGGAGAAGCAACAGCCGCCGATGAGTCGGAAGGCGGTGAGCGGCGGGTCGGAATTCGAGGACGTGAAGCCGGAGAATCTGATGGCGTGCCCACCACCGCCGGCGGTGGCGGCCACGCGCCCGAGTGAGTACGTGTACTTTGACAACTCGGATTCGGTGCCCCGGCTGCACACGGACTCGAGCTGCTCGGAGCAGGTGGTGTCGCCGGAGTTCACGAGCGAGGTGCAGAGCGAGCCCAAGTGGAAGGAGTGGGAGAAGGCCCTTGATTTTCCTTACAATTACGGGGATGCCACCGTGGAAAACGGGGGGTTCGGGGCGCAGTTTCAGGGTGGGAATCAGATGTCGCCGCTGCAGGATATTTTCATGTACCTGCAGAAGCCCTATTGA

Protein Analysis

289

Amino Acids

32.89

Weight (kDa)

7.58

Isoelectric Point (pI)

55.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 132 7.1e-50 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011814)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 667
Acc36I ACCTGC 2 cut(s) 667, 861
AccB1I GGYRCC 1 cut(s) 640
AccBSI CCGCTC 2 cut(s) 258, 525
AccII CGCG 1 cut(s) 601
AclWI GGATC 2 cut(s) 383, 414
AcoI YGGCCR 1 cut(s) 594
AcsI RAATTY 1 cut(s) 536
AfaI GTAC 6 cut(s) 137, 176, 263, 614, 620, 851
AfiI CCNNNNNNNGG 2 cut(s) 166, 258
AflII CTTAAG 1 cut(s) 433
AflIII ACRYGT 1 cut(s) 615
AjiI CACGTC 2 cut(s) 403, 547
AjnI CCWGG 3 cut(s) 28, 149, 160
AluBI AGCT 4 cut(s) 61, 157, 432, 666
AluI AGCT 4 cut(s) 61, 157, 432, 666
Alw21I GWGCWC 2 cut(s) 63, 159
AlwI GGATC 2 cut(s) 383, 414
Ama87I CYCGRG 3 cut(s) 352, 604, 661
AoxI GGCC 3 cut(s) 236, 594, 741
ApeKI GCWGC 4 cut(s) 248, 649, 666, 832
ApoI RAATTY 1 cut(s) 536
ArsI GACNNNNNNTTYG 2 cut(s) 48, 80
AspLEI GCGC 2 cut(s) 603, 802
AspS9I GGNCC 2 cut(s) 211, 742
AsuC2I CCSGG 3 cut(s) 245, 253, 646
AsuHPI GGTGA 1 cut(s) 532
AvaI CYCGRG 3 cut(s) 352, 604, 661
AvaII GGWCC 1 cut(s) 211
BaeGI GKGCMC 2 cut(s) 575, 645
BanI GGYRCC 1 cut(s) 640
BanII GRGCYC 3 cut(s) 63, 159, 720
BauI CACGAG 1 cut(s) 697
BbsI GAAGAC 1 cut(s) 371
Bbv12I GWGCWC 2 cut(s) 63, 159
BbvI GCAGC 4 cut(s) 235, 636, 653, 819
BccI CCATC 1 cut(s) 559
BceAI ACGGC 1 cut(s) 498
BcgI CGANNNNNNTGC 4 cut(s) 371, 405, 688, 722
BciT130I CCWGG 3 cut(s) 30, 151, 162
BcnI CCSGG 3 cut(s) 245, 253, 646
BfmI CTRYAG 2 cut(s) 833, 854
BfrI CTTAAG 1 cut(s) 433
BfuAI ACCTGC 2 cut(s) 667, 861
BglI GCCNNNNNGGC 1 cut(s) 295
BisI GCNGC 9 cut(s) 249, 460, 500, 526, 594, 650, 667, 830, 833
BlsI GCNGC 9 cut(s) 250, 461, 501, 527, 595, 651, 668, 831, 834
Bme1390I CCNGG 6 cut(s) 30, 151, 162, 245, 253, 646
Bme18I GGWCC 1 cut(s) 211
BmeT110I CYCGRG 3 cut(s) 352, 604, 661
BmgBI CACGTC 2 cut(s) 403, 547
BmgT120I GGNCC 2 cut(s) 211, 742
BmiI GGNNCC 4 cut(s) 41, 212, 280, 642
BmrFI CCNGG 6 cut(s) 30, 151, 162, 245, 253, 646
BmsI GCATC 1 cut(s) 760
BpiI GAAGAC 1 cut(s) 371
BpuMI CCSGG 3 cut(s) 245, 253, 646
Bsa29I ATCGAT 1 cut(s) 129
BsaAI YACGTR 1 cut(s) 616
BsaJI CCNNGG 8 cut(s) 9, 28, 149, 150, 160, 206, 644, 777
BsaWI WCCGGW 3 cut(s) 36, 213, 275
BsaXI ACNNNNNCTCC 2 cut(s) 5, 35
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 258
Bse118I RCCGGY 2 cut(s) 307, 583
Bse1I ACTGG 2 cut(s) 91, 269
BseBI CCWGG 3 cut(s) 30, 151, 162
BseCI ATCGAT 1 cut(s) 129
BseDI CCNNGG 8 cut(s) 9, 28, 149, 150, 160, 206, 644, 777
BseGI GGATG 1 cut(s) 775
BseLI CCNNNNNNNGG 2 cut(s) 166, 258
BseNI ACTGG 2 cut(s) 91, 269
BseRI GAGGAG 1 cut(s) 372
BseSI GKGCMC 2 cut(s) 575, 645
BseXI GCAGC 4 cut(s) 235, 636, 653, 819
BsgI GTGCAG 2 cut(s) 635, 728
Bsh1236I CGCG 1 cut(s) 601
Bsh1285I CGRYCG 3 cut(s) 276, 294, 312
BshFI GGCC 3 cut(s) 238, 596, 743
BshNI GGYRCC 1 cut(s) 640
BshVI ATCGAT 1 cut(s) 129
BsiEI CGRYCG 3 cut(s) 276, 294, 312
BsiHKAI GWGCWC 2 cut(s) 63, 159
BsiHKCI CYCGRG 3 cut(s) 352, 604, 661
BslFI GGGAC 3 cut(s) 79, 224, 493
BslI CCNNNNNNNGG 2 cut(s) 166, 258
BsmFI GGGAC 3 cut(s) 79, 224, 493
BsnI GGCC 3 cut(s) 238, 596, 743
BsoBI CYCGRG 3 cut(s) 352, 604, 661
Bsp1286I GDGCHC 5 cut(s) 63, 159, 575, 645, 720
Bsp1407I TGTACA 1 cut(s) 135
Bsp143I GATC 5 cut(s) 102, 130, 291, 375, 406
BspANI GGCC 3 cut(s) 238, 596, 743
BspDI ATCGAT 1 cut(s) 129
BspFNI CGCG 1 cut(s) 601
BspLI GGNNCC 4 cut(s) 41, 212, 280, 642
BspMAI CTGCAG 2 cut(s) 837, 858
BspMI ACCTGC 2 cut(s) 667, 861
BspPI GGATC 2 cut(s) 383, 414
BspQI GCTCTTC 1 cut(s) 51
BspT107I GGYRCC 1 cut(s) 640
BspTI CTTAAG 1 cut(s) 433
BsrBI CCGCTC 2 cut(s) 258, 525
BsrFI RCCGGY 2 cut(s) 307, 583
BsrGI TGTACA 1 cut(s) 135
BsrI ACTGG 2 cut(s) 91, 269
BssAI RCCGGY 2 cut(s) 307, 583
BssECI CCNNGG 8 cut(s) 9, 28, 149, 150, 160, 206, 644, 777
BssMI GATC 5 cut(s) 102, 130, 291, 375, 406
BssSI CACGAG 1 cut(s) 697
Bst2BI CACGAG 1 cut(s) 697
Bst2UI CCWGG 3 cut(s) 30, 151, 162
Bst4CI ACNGT 3 cut(s) 21, 230, 778
Bst6I CTCTTC 1 cut(s) 51
BstAFI CTTAAG 1 cut(s) 433
BstAUI TGTACA 1 cut(s) 135
BstBAI YACGTR 1 cut(s) 616
BstC8I GCNNGC 3 cut(s) 571, 585, 716
BstDSI CCRYGG 1 cut(s) 777
BstF5I GGATG 1 cut(s) 775
BstFNI CGCG 1 cut(s) 601
BstHHI GCGC 2 cut(s) 603, 802
BstKTI GATC 5 cut(s) 105, 133, 294, 378, 409
BstMBI GATC 5 cut(s) 102, 130, 291, 375, 406
BstMCI CGRYCG 3 cut(s) 276, 294, 312
BstNI CCWGG 3 cut(s) 30, 151, 162
BstSCI CCNGG 6 cut(s) 28, 149, 160, 243, 251, 644
BstSFI CTRYAG 2 cut(s) 833, 854
BstSLI GKGCMC 2 cut(s) 575, 645
BstUI CGCG 1 cut(s) 601
BstV1I GCAGC 4 cut(s) 235, 636, 653, 819
BstV2I GAAGAC 1 cut(s) 371
Bsu15I ATCGAT 1 cut(s) 129
BsuRI GGCC 3 cut(s) 238, 596, 743
BsuTUI ATCGAT 1 cut(s) 129
BtgI CCRYGG 1 cut(s) 777
BtgZI GCGATG 1 cut(s) 103
BtrI CACGTC 2 cut(s) 403, 547
BtsCI GGATG 1 cut(s) 775
BveI ACCTGC 2 cut(s) 667, 861
Cac8I GCNNGC 3 cut(s) 571, 585, 716
CfoI GCGC 2 cut(s) 603, 802
Cfr10I RCCGGY 2 cut(s) 307, 583
Cfr13I GGNCC 2 cut(s) 211, 742
ClaI ATCGAT 1 cut(s) 129
Csp6I GTAC 6 cut(s) 136, 175, 262, 613, 619, 850
CviAII CATG 3 cut(s) 379, 383, 847
CviQI GTAC 6 cut(s) 136, 175, 262, 613, 619, 850
DpnI GATC 5 cut(s) 104, 132, 293, 377, 408
DpnII GATC 5 cut(s) 102, 130, 291, 375, 406
EaeI YGGCCR 1 cut(s) 594
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
EciI GGCGGA 1 cut(s) 500
Ecl136II GAGCTC 2 cut(s) 61, 157
Eco24I GRGCYC 3 cut(s) 63, 159, 720
Eco47I GGWCC 1 cut(s) 211
Eco53kI GAGCTC 2 cut(s) 61, 157
Eco88I CYCGRG 3 cut(s) 352, 604, 661
EcoICRI GAGCTC 2 cut(s) 61, 157
EcoO109I RGGNCCY 1 cut(s) 742
EcoRI GAATTC 1 cut(s) 536
EcoRII CCWGG 3 cut(s) 28, 149, 160
EcoT22I ATGCAT 1 cut(s) 384
EcoT38I GRGCYC 3 cut(s) 63, 159, 720
FaeI CATG 3 cut(s) 382, 386, 850
FaiI YATR 6 cut(s) 144, 380, 384, 464, 466, 848
FaqI GGGAC 3 cut(s) 79, 224, 493
FatI CATG 3 cut(s) 378, 382, 846
FauI CCCGC 2 cut(s) 251, 521
Fnu4HI GCNGC 9 cut(s) 249, 460, 500, 526, 594, 650, 667, 830, 833
FokI GGATG 1 cut(s) 782
FriOI GRGCYC 3 cut(s) 63, 159, 720
Fsp4HI GCNGC 9 cut(s) 249, 460, 500, 526, 594, 650, 667, 830, 833
GlaI GCGC 2 cut(s) 602, 801
GluI GCNGC 9 cut(s) 249, 460, 500, 526, 594, 650, 667, 830, 833
HaeIII GGCC 3 cut(s) 238, 596, 743
HhaI GCGC 2 cut(s) 603, 802
Hin1II CATG 3 cut(s) 382, 386, 850
Hin6I GCGC 2 cut(s) 601, 800
HinP1I GCGC 2 cut(s) 601, 800
HinfI GANTC 5 cut(s) 508, 559, 635, 659, 817
HphI GGTGA 1 cut(s) 532
Hpy166II GTNNAC 2 cut(s) 619, 696
Hpy188I TCNGA 8 cut(s) 13, 303, 513, 535, 564, 634, 673, 822
Hpy188III TCNNGA 2 cut(s) 313, 697
Hpy8I GTNNAC 2 cut(s) 619, 696
Hpy99I CGWCG 2 cut(s) 56, 404
HpyAV CCTTC 5 cut(s) 178, 262, 508, 721, 733
HpyCH4III ACNGT 3 cut(s) 21, 230, 778
HpyCH4IV ACGT 3 cut(s) 402, 546, 615
HpyCH4V TGCA 5 cut(s) 382, 652, 709, 835, 856
HpySE526I ACGT 3 cut(s) 402, 546, 615
Hsp92II CATG 3 cut(s) 382, 386, 850
HspAI GCGC 2 cut(s) 601, 800
KroI GCCGGC 1 cut(s) 583
KroNI GCCGGC 1 cut(s) 585
Kzo9I GATC 5 cut(s) 102, 130, 291, 375, 406
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 5 cut(s) 154, 162, 255, 278, 673
Lsp1109I GCAGC 4 cut(s) 235, 636, 653, 819
LweI GCATC 1 cut(s) 760
MaeII ACGT 3 cut(s) 402, 546, 615
MaeIII GTNAC 2 cut(s) 15, 21
MalI GATC 5 cut(s) 104, 132, 293, 377, 408
MbiI CCGCTC 2 cut(s) 258, 525
MboI GATC 5 cut(s) 102, 130, 291, 375, 406
MboII GAAGA 2 cut(s) 68, 376
MfeI CAATTG 1 cut(s) 370
MhlI GDGCHC 5 cut(s) 63, 159, 575, 645, 720
MluCI AATT 3 cut(s) 370, 536, 760
MlyI GAGTC 2 cut(s) 517, 653
MmeI TCCRAC 3 cut(s) 420, 491, 513
MnlI CCTC 9 cut(s) 19, 86, 201, 228, 350, 404, 426, 535, 697
Mph1103I ATGCAT 1 cut(s) 384
MreI CGCCGGCG 1 cut(s) 583
MroNI GCCGGC 1 cut(s) 583
MseI TTAA 2 cut(s) 318, 434
MspA1I CMGCKG 1 cut(s) 832
MspCI CTTAAG 1 cut(s) 433
MspR9I CCNGG 6 cut(s) 30, 151, 162, 245, 253, 646
MunI CAATTG 1 cut(s) 370
MvaI CCWGG 3 cut(s) 30, 151, 162
MvnI CGCG 1 cut(s) 601
NaeI GCCGGC 1 cut(s) 585
NciI CCSGG 3 cut(s) 245, 253, 646
NdeII GATC 5 cut(s) 102, 130, 291, 375, 406
NgoMIV GCCGGC 1 cut(s) 583
NlaIII CATG 3 cut(s) 382, 386, 850
NlaIV GGNNCC 4 cut(s) 41, 212, 280, 642
NmeAIII GCCGAG 1 cut(s) 231
NsiI ATGCAT 1 cut(s) 384
PaeR7I CTCGAG 1 cut(s) 661
PaqCI CACCTGC 1 cut(s) 667
PasI CCCWGGG 1 cut(s) 150
PciSI GCTCTTC 1 cut(s) 51
PcsI WCGNNNNNNNCGW 2 cut(s) 60, 126
PdiI GCCGGC 1 cut(s) 585
PfeI GAWTC 3 cut(s) 559, 635, 817
PkrI GCNGC 9 cut(s) 250, 461, 501, 527, 595, 651, 668, 831, 834
Ple19I CGATCG 1 cut(s) 294
PleI GAGTC 2 cut(s) 516, 653
PpsI GAGTC 2 cut(s) 516, 653
Ppu21I YACGTR 1 cut(s) 616
Psp124BI GAGCTC 2 cut(s) 63, 159
Psp6I CCWGG 3 cut(s) 28, 149, 160
PspGI CCWGG 3 cut(s) 28, 149, 160
PspN4I GGNNCC 4 cut(s) 41, 212, 280, 642
PspPI GGNCC 2 cut(s) 211, 742
PspXI VCTCGAGB 1 cut(s) 661
PstI CTGCAG 2 cut(s) 837, 858
PvuI CGATCG 1 cut(s) 294
RsaI GTAC 6 cut(s) 137, 176, 263, 614, 620, 851
RsaNI GTAC 6 cut(s) 136, 175, 262, 613, 619, 850
SacI GAGCTC 2 cut(s) 63, 159
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 2 cut(s) 318, 434
SatI GCNGC 9 cut(s) 249, 460, 500, 526, 594, 650, 667, 830, 833
Sau3AI GATC 5 cut(s) 102, 130, 291, 375, 406
Sau96I GGNCC 2 cut(s) 211, 742
SchI GAGTC 2 cut(s) 517, 653
ScrFI CCNGG 6 cut(s) 30, 151, 162, 245, 253, 646
SduI GDGCHC 5 cut(s) 63, 159, 575, 645, 720
SfaNI GCATC 1 cut(s) 760
SfcI CTRYAG 2 cut(s) 833, 854
Sfr274I CTCGAG 1 cut(s) 661
SgrAI CRCCGGYG 1 cut(s) 583
SinI GGWCC 1 cut(s) 211
SlaI CTCGAG 1 cut(s) 661
SmlI CTYRAG 2 cut(s) 433, 661
SmoI CTYRAG 2 cut(s) 433, 661
Sse9I AATT 3 cut(s) 370, 536, 760
SstI GAGCTC 2 cut(s) 63, 159
StyD4I CCNGG 6 cut(s) 28, 149, 160, 243, 251, 644
TaaI ACNGT 3 cut(s) 21, 230, 778
TaiI ACGT 3 cut(s) 405, 549, 618
TaqI TCGA 5 cut(s) 129, 233, 409, 540, 662
TasI AATT 3 cut(s) 370, 536, 760
TatI WGTACW 2 cut(s) 135, 618
TauI GCSGC 5 cut(s) 462, 502, 528, 596, 832
TfiI GAWTC 3 cut(s) 559, 635, 817
Tru1I TTAA 2 cut(s) 318, 434
Tru9I TTAA 2 cut(s) 318, 434
TseI GCWGC 4 cut(s) 248, 649, 666, 832
TspDTI ATGAA 1 cut(s) 835
TspGWI ACGGA 2 cut(s) 192, 671
Vha464I CTTAAG 1 cut(s) 433
VpaK11BI GGWCC 1 cut(s) 211
XapI RAATTY 1 cut(s) 536
XhoI CTCGAG 1 cut(s) 661
Zsp2I ATGCAT 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.