Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011814

Physical Location & Seq

Genomic Coordinates Reverse (-)

40741397 .. 40754337

Gene Structure 12941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0260600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4200 bp

ATGTTGCGGTTAAGAGCTTTCCGGCCGACGAACGACAAGATCGTCAAGATTCAGTTGCATCCAACGCATCCATGGCTCGTCACCGCCGATGCCTCCGATCACGTCTCCGTTTGGAATTGGGAACATCGCCAGGTGATTTACGAGCTCAAAGCTGGCGGCGTCGATCACCGGCGTTTGGTCGGAGCCAAGTTGGAGAAGCTCGCCGAGGGTGAAACAGACTCCAAGGGGAAACCCACTGAAGCCATTCGTGGAGGGAGTGTTAAGCAGGTCAACTTCTATGATGATGACGTGCGCTTTTGGCAACTTTGGCGTAACCGTTCTGCAGCTGCTGAGGCTCCATCGGCCGTCAATAATGTAGCATCACCATTTAATTCTCCCGCTCCAACAACCAAAGGAAGACACTTTCTTGTCATCTGTTGTGAAAACAAAGCCATATTTTTGGACTTGGTGACAATGCGTGGCCGTGATGTACCAAAGCAGGAACTTGACAACAAATCACTTCTCTGTATGGAATTTCTCTCTAGATCTGCTGTTGGTGATGTTCCTCTTGTTGCTTTTGGTGGATCAGATGGTGTTATTAGAGTACTTTCAATGATGACATGGAAGCTTGTAAGAAGATACACCGGAGGTCATAAAGGATCCATAGCTTGTTTGATGACATTTGTGTCCTCTTCTGGTGAGGCTCTTTTGGTCTCGGGGGGTAATGATGGTTTGCTTGTGGTTTGGAGTGCAGATCATGCTCAAGATTCAAGAGAACTCGTACCCAAGCTCAGTATAAAGGCACATGATGGTGGGGTTGTCGCTGTTGAACTTTCTAGAGTGATCGGAGCAGCTCCTCAGCTTATCTCAATTGGTGCAGATAAGACATTAGCTATATGGGACACAATTTCTTTTAAGGAGCTGCGGCGCATTAAACCTGTTCCAAAAATGGCTTGCCATAGTGTGGCATCCTGGTGCCACCCTCGTGCTCCAAACCTTGATATACTGACTTGCGTTAAAGATTCCAATATATGGGCCATCGAACACCCAACTTACTCTGCTCTGACAAGGCCGTTGTGTGAACTTTCTTCTCTGATCCCTCCACATGTGATCGCTCCCAATAAGAAAATTAGGGTTTACTGTATGGTTGCACATCCTTTACAGCCTCACCTGGTTGCTACTGGATCCAATGTTGGTATCATTATCAGTGAATTTGACCCCAGATCTCTTCCAGCTGTAGCTCCCCTACTAACACCATCAGGAAGTCGAGAGCATTCTGCTGTGTATGTTATTGAAAGGGAACTGAAGCTGTTAAACTTTCAGTTATCCCAGACAGCAAATCCAACTCTTGGAAATAATGCTTCTTTGTCGGAGACCGGAAGGCTTAGGGGAGATTCACTTGAAGCATTACATGTCAAACAGATTAAGAAGCACATTAGTACGCCTGTTCCACATGATTCATATTCAATTCTTTCTGTAAGCAGTTCGGGAAAGTATCTTGCGATTGTTTGGCCAGATATCCCTTACTTCTCTATTTACAAAGTTAGTGACTGGTCCATCGTTGATTCAGGCAGTGCAAGGCTTTTGGCTTGGGATACATGCCGTGATAGATTTGCCATACTGGAATCGTCATTGCCTCCTCGAATTCCTGTAGTTCCGAAGGGCAGTTCGTCGAGAAAAGCAAGAGAAGCAGCTGCAGCTGCAGCACAAGCTGCTGCTGCAGCTGCATCAGCTGCTTCTGCAGCCAATGTACAAGTTCGTATCTTGCTGGATGATGGCACCTCAAATATTTTAATGAGATCCATAGGTGGTCGCAGTGAACCGGTCATTGGCTTGCACGGAGGGGCACTTCTTGGTGTTGCATATCGAACATCTCGGAGAATTAGCCCAGTTGCTGCAACCGCTATTTCAACAATTCAATCTATGCCCCTGTCTGGATTTGGAAGTGCTGGTGTTTCTTCTTTTTCCACTTTTGACGATGGGTTTTCTTCTCACAAGTCTCCAGCTGAGGCTACACCCCAAAACTTTCAGCTATATAGTTGGGAAACTTTTCAACCTGTTGGTGGTCTACTTCCTCAGCCAGAATGGACAGCATGGGATCAAACGGTTGAGTATTGCGCTTTTGCATATCAGAAATACATCGTCATATCTTCTTTGCGCCCACAATATAGATACCTGGGCGATGTTGCAATTCCTTATGCTACTGGTGCTGTATGGCATCGGCGACAGTTGTTTGTTGTTACCCCAACCACCATCGAATGTGTTTTTGTGGATGCTGGAGTTGCAGCGATTGATATCGAAACGAAAAAGAGGAAAGAGGAGATGATGCTGAAGGAGGTACAAGCAAAGGCCCTTGCTGAGCATGGTGATTTGGCACTAATTGCGGTTGATGGTCCTCAATCTGCTACCCAGGAAAGGATAGCATTGAGGCCCCCAATGCTACAGGTGGTGCGATTAGCCTCATTTCAGCATGCTCCATCTGTGCCCCCATTCTTAACCTTGTCAAAGCAATCTAGAGTTGATGGGGATGATTCTGGGATTGCAGAAGAAAGAAAGGTTAACGAGGTGGCTGTTGGTGGTGGAGGGGTCTCAGTTGCAGTTACTCGTTTTCCATTAGAGCAGAAACGACCTGTAGGACCTCTGGTTGTGGTGGGTGTCAAAGATGGTGTTCTTTGGCTAATTGATAGATACATGAGTGCTCATGCCTTATCGCTCAGCCACCCCGGTATCCGCTGTCGGTGCCTTGCTGCTTATGGAGATGCTGTTAGTGCTGTGAAATGGGCAAGTAGGCTTGGCAGAGAACATCATGATGATTTAGCCCAGTTTCTGCTAGGGATGGGTTATGCTACTGAGGCACTTCATTTGCCTGGAATCTCTAAGAGGTTGGAGTTTGATTTGGCCATGCAGAGCAGTGATTTGAAAAGAGCTCTCCAGTGCCTTCTCACAATGAGCAACAGCAGGGACTTGGGGCAAGATAATTCAGGATTTGATTTGAAGGACATTCTTACTATAACAACTAAGAAAGAGAATATATTGGAAGCTGTCCAAGGAATAGTGAAATTTACAAAGGAGTTTTTGGATCTTATTGATGCCGCAGATGCTACTGGACAGGCTGAAATTGCTCGGGAGGCTCTGAAGAGGTTGGCTGCTGCGGCTTCTGTGAAAGGAGCTTTACAGGGTCATGAATTAAGAGGACAAGCTCTTCGGTTAGCCAATCATGGAGAGTTGACACGGCTTAGTAATTTGGTAAACAATTTAATATCCATTGGTGCTGGACGGGAAGCAGCATTCGCAGCTGCAGTTTTGGGAGACAATGCCCTCATGGAGAAGGCTTGGCAGGATACTGGAATGCTTGCTGAGGCTGTGCTTCATGCCCATGCTCATGGGAGACCAACATTGAAGAACTTGGTTCAGGCATGGAATAAAATGCTGCAAAAGGAGGTTGAGCACACCCCATTAGAAAAAACGGATGCTGCTGCAGCATTTTTGGCTTCTCTGGAGGAACCCAAGCTTACAAGTTTAGCAGATGCTGCCAAGAAACCACCGATTGAAATTCTTCCTCCAGGGATGCCATCTCTTACAGTTGCTATGGCTGTTCAAAAGAAACCGCCTCCAGGGGCCCAGAATTCACAGCAGCAACCGGGCAAGCCACTGCTGTTAGATGCAGCCCCTGCTACCACACCAGCCCCTTCAAGTGTGCCACAACAATCTGAATCAGGTGAACCAACTTCAGACAATAATCCCCCTGTTTCATCAACAGACAGTAATCCAGCTCCAGTTGCTTCTGGAGAAAGTGTCCCGGAAAATTCTAAGAATGATGTGGCACCATCAGACACGCCATCAGATGCGCCACCTCAAACCTCACAATCTGATGCCGCATCCCAAGGCCCACAACCTGATGCAACCCCATCCGAAGCGCCGCAACCTGATGTCCCATCCCAAGCGCCGCAACCTGATGCCCCATCCCAAGCACTGCAACCTGATACCCCATCCCAGGCACCGCAACCAGAAGCCCCATCCCAGGCGCCGCTACCAGAAGCCCCATCCCAAGCACCGCAGCCAGAGGCCTCATCCCAGGCGCTGCAACCAGAGGCCTCATCTCAAGTGCCACAACCACAGGTCCCAATCCAGACACCACCATTACAAACCCAACCCCAGGTGCCAGCGATTCAGGAAACCAAACAAGCAAGATTGCCAATAAGTGATGATTGGCTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002831 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009611 GO:0009628 GO:0009787 GO:0009788 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009968 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0047484 GO:0048316 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1900150 GO:1901000 GO:1901002 GO:1901363 GO:1901419 GO:1901420 GO:1902584 GO:1902680 GO:1903506 GO:1903508 GO:1905623 GO:1905957 GO:1905958 GO:2000024 GO:2000026 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

1399

Amino Acids

150.32

Weight (kDa)

6.54

Isoelectric Point (pI)

50.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_1st	PF25173	181 - 296	2.9e-08	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	182 - 312	7.2e-06	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	189 - 293	3.3e-06	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	228 - 305	9e-06	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01720 AT1G77450
fragaria_vesca	FvH4_2g27430
malus_domestica	MD00G1028600.v1.1 MD15G1344900.v1.1
prunus_persica	Prupe.1G493100_v2.0.a1
pyrus_communis	pycom15g30950
rosa_chinensis	RchiOBHm_Chr6g0296281
rosa_laevigata	RLG00000011710
rosa_multiflora	Rmu_sc0004708.1_g000008 Rmu_sc0007700.1_g000001
rosa_roxburghii	Rroxscaffold_7G00171670 Rroxscaffold_7G00178400
rosa_rugosa	Rorug06G0260600
rosa_samantha	Rh6AG372300 Rh6BG380300 Rh6CG385700 Rh6DG373000
rosa_wichuraiana	Rw6G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	41, 664
Acc36I	ACCTGC	1 cut(s)	256
AccB1I	GGYRCC	7 cut(s)	954, 1757, 2718, 3802, 3976, 4003, 4138
AccB7I	CCANNNNNTGG	3 cut(s)	943, 1011, 1328
AccBSI	CCGCTC	1 cut(s)	380
AccI	GTMKAC	1 cut(s)	2047
AclWI	GGATC	9 cut(s)	571, 633, 646, 1069, 1158, 1171, 1773, 2085, 3066
AcoI	YGGCCR	5 cut(s)	23, 342, 460, 1490, 2877
AcsI	RAATTY	7 cut(s)	512, 1190, 1623, 3038, 3531, 3604, 3784
AcuI	CTGAAG	5 cut(s)	258, 1304, 2330, 3134, 3693
AcyI	GRCGYC	2 cut(s)	159, 4004
AfaI	GTAC	6 cut(s)	471, 585, 762, 1420, 1731, 2319
AflIII	ACRYGT	2 cut(s)	1084, 1390
AgeI	ACCGGT	1 cut(s)	1801
AjiI	CACGTC	2 cut(s)	103, 289
AjuI	GAANNNNNNNTTGG	2 cut(s)	1791, 1823
AleI	CACNNNNGTG	1 cut(s)	963
Alw21I	GWGCWC	5 cut(s)	147, 970, 2680, 2908, 3429
Alw26I	GTCTC	7 cut(s)	109, 697, 1346, 1983, 2572, 3282, 3361
AlwI	GGATC	9 cut(s)	571, 633, 646, 1069, 1158, 1171, 1773, 2085, 3066
AlwNI	CAGNNNCTG	6 cut(s)	329, 1874, 2806, 3509, 3650, 4060
Ama87I	CYCGRG	2 cut(s)	694, 3102
ApaI	GGGCCC	1 cut(s)	3601
ApoI	RAATTY	7 cut(s)	512, 1190, 1623, 3038, 3531, 3604, 3784
ArsI	GACNNNNNNTTYG	2 cut(s)	3165, 3197
AsiGI	ACCGGT	1 cut(s)	1801
Asp700I	GAANNNNTTC	3 cut(s)	243, 2028, 3534
AspLEI	GCGC	9 cut(s)	294, 909, 2099, 2139, 3829, 3898, 3925, 4006, 4060
AsuC2I	CCSGG	3 cut(s)	2703, 3621, 3779
AvaI	CYCGRG	2 cut(s)	694, 3102
AvaII	GGWCC	4 cut(s)	1533, 2372, 2615, 4099
BaeGI	GKGCMC	3 cut(s)	1828, 2466, 3601
BaeI	ACNNNNGTAYC	4 cut(s)	2659, 2689, 2692, 2722
BalI	TGGCCA	2 cut(s)	1492, 2879
BamHI	GGATCC	2 cut(s)	638, 1163
BanI	GGYRCC	7 cut(s)	954, 1757, 2718, 3802, 3976, 4003, 4138
BanII	GRGCYC	3 cut(s)	147, 2908, 3601
BauI	CACGAG	1 cut(s)	963
BbsI	GAAGAC	1 cut(s)	403
Bbv12I	GWGCWC	5 cut(s)	147, 970, 2680, 2908, 3429
BbvCI	CCTCAGC	5 cut(s)	330, 837, 1986, 2055, 3336
BceAI	ACGGC	5 cut(s)	329, 447, 1036, 1566, 3227
BciVI	GTATCC	3 cut(s)	1567, 2717, 3313
BcnI	CCSGG	3 cut(s)	2703, 3621, 3779
BcoDI	GTCTC	7 cut(s)	109, 697, 1346, 1983, 2572, 3282, 3361
BfaI	CTAG	4 cut(s)	522, 816, 2493, 2810
BfoI	RGCGCY	4 cut(s)	3899, 3926, 4007, 4061
BfuAI	ACCTGC	1 cut(s)	256
BfuI	GTATCC	3 cut(s)	1567, 2717, 3313
BglII	AGATCT	2 cut(s)	524, 1202
BlpI	GCTNAGC	2 cut(s)	2337, 2693
BmcAI	AGTACT	1 cut(s)	585
Bme18I	GGWCC	4 cut(s)	1533, 2372, 2615, 4099
BmeT110I	CYCGRG	2 cut(s)	694, 3102
BmgBI	CACGTC	2 cut(s)	103, 289
BmrI	ACTGGG	2 cut(s)	1862, 2794
BmuI	ACTGGG	2 cut(s)	1862, 2794
BpiI	GAAGAC	1 cut(s)	403
BpmI	CTGGAG	8 cut(s)	1965, 2277, 2894, 3497, 3525, 3576, 3738, 3786
Bpu10I	CCTNAGC	6 cut(s)	330, 837, 1364, 1986, 2055, 3336
Bpu1102I	GCTNAGC	2 cut(s)	2337, 2693
BpuEI	CTTGAG	2 cut(s)	726, 4065
BpuMI	CCSGG	3 cut(s)	2703, 3621, 3779
BsaBI	GATNNNNATC	1 cut(s)	2273
BsaHI	GRCGYC	2 cut(s)	159, 4004
BsaI	GGTCTC	4 cut(s)	697, 1346, 2572, 3361
BsaWI	WCCGGW	3 cut(s)	623, 1355, 1801
BsaXI	ACNNNNNCTCC	6 cut(s)	243, 273, 2727, 2757, 3759, 3789
Bse118I	RCCGGY	2 cut(s)	168, 1801
Bse3DI	GCAATG	1 cut(s)	1610
Bse8I	GATNNNNATC	1 cut(s)	2273
BseJI	GATNNNNATC	1 cut(s)	2273
BseMI	GCAATG	1 cut(s)	1610
BseRI	GAGGAG	3 cut(s)	825, 1608, 2312
BseSI	GKGCMC	3 cut(s)	1828, 2466, 3601
BseX3I	CGGCCG	2 cut(s)	23, 342
BsgI	GTGCAG	2 cut(s)	750, 876
Bsh1285I	CGRYCG	2 cut(s)	26, 345
BshNI	GGYRCC	7 cut(s)	954, 1757, 2718, 3802, 3976, 4003, 4138
BshTI	ACCGGT	1 cut(s)	1801
BsiEI	CGRYCG	2 cut(s)	26, 345
BsiHKAI	GWGCWC	5 cut(s)	147, 970, 2680, 2908, 3429
BsiHKCI	CYCGRG	2 cut(s)	694, 3102
BsiSI	CCGG	8 cut(s)	22, 169, 624, 1356, 1802, 2703, 3620, 3779
BslFI	GGGAC	5 cut(s)	893, 2954, 3761, 3896, 4085
BsmAI	GTCTC	7 cut(s)	109, 697, 1346, 1983, 2572, 3282, 3361
BsmBI	CGTCTC	1 cut(s)	109
BsmFI	GGGAC	5 cut(s)	893, 2954, 3761, 3896, 4085
BsmI	GAATGC	3 cut(s)	1252, 3266, 3333
Bso31I	GGTCTC	4 cut(s)	697, 1346, 2572, 3361
BsoBI	CYCGRG	2 cut(s)	694, 3102
Bsp120I	GGGCCC	1 cut(s)	3597
Bsp1286I	GDGCHC	8 cut(s)	147, 970, 1828, 2466, 2680, 2908, 3429, 3601
Bsp1407I	TGTACA	1 cut(s)	1729
Bsp1720I	GCTNAGC	2 cut(s)	2337, 2693
Bsp19I	CCATGG	1 cut(s)	71
BspHI	TCATGA	2 cut(s)	2785, 3160
BspMAI	CTGCAG	7 cut(s)	325, 1678, 1684, 1702, 1723, 3280, 3460
BspMI	ACCTGC	1 cut(s)	256
BspPI	GGATC	9 cut(s)	571, 633, 646, 1069, 1158, 1171, 1773, 2085, 3066
BspQI	GCTCTTC	1 cut(s)	3186
BspT107I	GGYRCC	7 cut(s)	954, 1757, 2718, 3802, 3976, 4003, 4138
BspTNI	GGTCTC	4 cut(s)	697, 1346, 2572, 3361
BsrBI	CCGCTC	1 cut(s)	380
BsrDI	GCAATG	1 cut(s)	1610
BsrFI	RCCGGY	2 cut(s)	168, 1801
BsrGI	TGTACA	1 cut(s)	1729
BssAI	RCCGGY	2 cut(s)	168, 1801
BssNI	GRCGYC	2 cut(s)	159, 4004
BssSI	CACGAG	1 cut(s)	963
BssT1I	CCWWGG	4 cut(s)	71, 222, 3025, 3862
Bst2BI	CACGAG	1 cut(s)	963
Bst4CI	ACNGT	6 cut(s)	317, 1121, 2086, 2208, 3562, 3743
Bst6I	CTCTTC	4 cut(s)	676, 1212, 3110, 3186
BstACI	GRCGYC	2 cut(s)	159, 4004
BstAPI	GCANNNNNTGC	6 cut(s)	737, 1691, 1712, 2360, 3509, 3650
BstAUI	TGTACA	1 cut(s)	1729
BstC8I	GCNNGC	8 cut(s)	154, 201, 934, 1814, 2451, 3333, 3626, 4143
BstDSI	CCRYGG	1 cut(s)	71
BstH2I	RGCGCY	4 cut(s)	3899, 3926, 4007, 4061
BstHHI	GCGC	9 cut(s)	294, 909, 2099, 2139, 3829, 3898, 3925, 4006, 4060
BstMAI	GTCTC	7 cut(s)	109, 697, 1346, 1983, 2572, 3282, 3361
BstMCI	CGRYCG	2 cut(s)	26, 345
BstNSI	RCATGY	4 cut(s)	1088, 1394, 1581, 2453
BstSLI	GKGCMC	3 cut(s)	1828, 2466, 3601
BstV2I	GAAGAC	1 cut(s)	403
BstX2I	RGATCY	6 cut(s)	524, 638, 1163, 1202, 1778, 3058
BstXI	CCANNNNNNTGG	2 cut(s)	439, 3362
BstYI	RGATCY	6 cut(s)	524, 638, 1163, 1202, 1778, 3058
BstZI	CGGCCG	2 cut(s)	23, 342
BsuI	GTATCC	3 cut(s)	1567, 2717, 3313
BtgI	CCRYGG	1 cut(s)	71
BtgZI	GCGATG	2 cut(s)	110, 2175
BtrI	CACGTC	2 cut(s)	103, 289
BtsI	GCAGTG	5 cut(s)	1558, 1801, 2896, 3629, 3950
BtsIMutI	CAGTG	8 cut(s)	234, 1192, 1558, 1801, 2896, 2918, 3629, 3950
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	8 cut(s)	154, 201, 934, 1814, 2451, 3333, 3626, 4143
CaiI	CAGNNNCTG	6 cut(s)	329, 1874, 2806, 3509, 3650, 4060
CciI	TCATGA	2 cut(s)	2785, 3160
CfoI	GCGC	9 cut(s)	294, 909, 2099, 2139, 3829, 3898, 3925, 4006, 4060
Cfr10I	RCCGGY	2 cut(s)	168, 1801
CseI	GACGC	1 cut(s)	148
CsiI	ACCWGGT	1 cut(s)	1149
Csp6I	GTAC	6 cut(s)	470, 584, 761, 1419, 1730, 2318
CspAI	ACCGGT	1 cut(s)	1801
CviQI	GTAC	6 cut(s)	470, 584, 761, 1419, 1730, 2318
DinI	GGCGCC	1 cut(s)	4005
DrdI	GACNNNNNNGTC	2 cut(s)	41, 664
DseDI	GACNNNNNNGTC	2 cut(s)	41, 664
EaeI	YGGCCR	5 cut(s)	23, 342, 460, 1490, 2877
EagI	CGGCCG	2 cut(s)	23, 342
Eam1104I	CTCTTC	4 cut(s)	676, 1212, 3110, 3186
EarI	CTCTTC	4 cut(s)	676, 1212, 3110, 3186
Ecl136II	GAGCTC	2 cut(s)	145, 2906
EclXI	CGGCCG	2 cut(s)	23, 342
Eco130I	CCWWGG	4 cut(s)	71, 222, 3025, 3862
Eco147I	AGGCCT	2 cut(s)	4046, 4073
Eco24I	GRGCYC	3 cut(s)	147, 2908, 3601
Eco31I	GGTCTC	4 cut(s)	697, 1346, 2572, 3361
Eco32I	GATATC	2 cut(s)	1498, 2275
Eco47I	GGWCC	4 cut(s)	1533, 2372, 2615, 4099
Eco52I	CGGCCG	2 cut(s)	23, 342
Eco53kI	GAGCTC	2 cut(s)	145, 2906
Eco57I	CTGAAG	5 cut(s)	258, 1304, 2330, 3134, 3693
Eco88I	CYCGRG	2 cut(s)	694, 3102
EcoICRI	GAGCTC	2 cut(s)	145, 2906
EcoO109I	RGGNCCY	5 cut(s)	2329, 2409, 2615, 3597, 4099
EcoRI	GAATTC	2 cut(s)	1623, 3604
EcoRV	GATATC	2 cut(s)	1498, 2275
EcoT14I	CCWWGG	4 cut(s)	71, 222, 3025, 3862
EcoT38I	GRGCYC	3 cut(s)	147, 2908, 3601
EgeI	GGCGCC	1 cut(s)	4005
EheI	GGCGCC	1 cut(s)	4005
ErhI	CCWWGG	4 cut(s)	71, 222, 3025, 3862
Esp3I	CGTCTC	1 cut(s)	109
FaqI	GGGAC	5 cut(s)	893, 2954, 3761, 3896, 4085
FauI	CCCGC	1 cut(s)	385
FblI	GTMKAC	1 cut(s)	2047
FriOI	GRGCYC	3 cut(s)	147, 2908, 3601
FspBI	CTAG	4 cut(s)	522, 816, 2493, 2810
GlaI	GCGC	9 cut(s)	293, 908, 2098, 2138, 3828, 3897, 3924, 4005, 4059
GsuI	CTGGAG	8 cut(s)	1965, 2277, 2894, 3497, 3525, 3576, 3738, 3786
HaeII	RGCGCY	4 cut(s)	3899, 3926, 4007, 4061
HapII	CCGG	8 cut(s)	22, 169, 624, 1356, 1802, 2703, 3620, 3779
HgaI	GACGC	1 cut(s)	148
HhaI	GCGC	9 cut(s)	294, 909, 2099, 2139, 3829, 3898, 3925, 4006, 4060
Hin1I	GRCGYC	2 cut(s)	159, 4004
Hin6I	GCGC	9 cut(s)	292, 907, 2097, 2137, 3827, 3896, 3923, 4004, 4058
HinP1I	GCGC	9 cut(s)	292, 907, 2097, 2137, 3827, 3896, 3923, 4004, 4058
HincII	GTYRAC	3 cut(s)	271, 2539, 3207
HindII	GTYRAC	3 cut(s)	271, 2539, 3207
HindIII	AAGCTT	2 cut(s)	605, 3488
HpaI	GTTAAC	1 cut(s)	2539
HpaII	CCGG	8 cut(s)	22, 169, 624, 1356, 1802, 2703, 3620, 3779
Hpy166II	GTNNAC	9 cut(s)	271, 1061, 1117, 1799, 2048, 2539, 3207, 3229, 3701
Hpy8I	GTNNAC	9 cut(s)	271, 1061, 1117, 1799, 2048, 2539, 3207, 3229, 3701
Hpy99I	CGWCG	3 cut(s)	31, 164, 1654
HpyAV	CCTTC	7 cut(s)	1353, 1633, 2305, 2927, 2968, 3301, 3678
HpyCH4III	ACNGT	6 cut(s)	317, 1121, 2086, 2208, 3562, 3743
HpyCH4IV	ACGT	2 cut(s)	102, 288
HpySE526I	ACGT	2 cut(s)	102, 288
Hsp92I	GRCGYC	2 cut(s)	159, 4004
HspAI	GCGC	9 cut(s)	292, 907, 2097, 2137, 3827, 3896, 3923, 4004, 4058
KasI	GGCGCC	1 cut(s)	4003
KspAI	GTTAAC	1 cut(s)	2539
LguI	GCTCTTC	1 cut(s)	3186
MabI	ACCWGGT	1 cut(s)	1149
MaeI	CTAG	4 cut(s)	522, 816, 2493, 2810
MaeII	ACGT	2 cut(s)	102, 288
MaeIII	GTNAC	6 cut(s)	79, 311, 448, 1526, 2218, 2578
MbiI	CCGCTC	1 cut(s)	380
MfeI	CAATTG	1 cut(s)	849
MflI	RGATCY	6 cut(s)	524, 638, 1163, 1202, 1778, 3058
MhlI	GDGCHC	8 cut(s)	147, 970, 1828, 2466, 2680, 2908, 3429, 3601
MlsI	TGGCCA	2 cut(s)	1492, 2879
MluNI	TGGCCA	2 cut(s)	1492, 2879
Mly113I	GGCGCC	1 cut(s)	4004
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	7 cut(s)	86, 160, 171, 407, 1329, 1346, 2844
Mox20I	TGGCCA	2 cut(s)	1492, 2879
MroXI	GAANNNNTTC	3 cut(s)	243, 2028, 3534
MscI	TGGCCA	2 cut(s)	1492, 2879
MslI	CAYNNNNRTG	6 cut(s)	789, 952, 963, 2787, 3354, 3360
Msp20I	TGGCCA	2 cut(s)	1492, 2879
MspA1I	CMGCKG	9 cut(s)	326, 1214, 1673, 1679, 1703, 1712, 1985, 2712, 3275
MspI	CCGG	8 cut(s)	22, 169, 624, 1356, 1802, 2703, 3620, 3779
MunI	CAATTG	1 cut(s)	849
Mva1269I	GAATGC	3 cut(s)	1252, 3266, 3333
NarI	GGCGCC	1 cut(s)	4004
NciI	CCSGG	3 cut(s)	2703, 3621, 3779
NcoI	CCATGG	1 cut(s)	71
NmeAIII	GCCGAG	1 cut(s)	229
NmuCI	GTSAC	3 cut(s)	79, 448, 1526
NspI	RCATGY	4 cut(s)	1088, 1394, 1581, 2453
OliI	CACNNNNGTG	1 cut(s)	963
PacI	TTAATTAA	1 cut(s)	4198
PaeI	GCATGC	1 cut(s)	2453
PagI	TCATGA	2 cut(s)	2785, 3160
PceI	AGGCCT	2 cut(s)	4046, 4073
PciI	ACATGT	2 cut(s)	1084, 1390
PciSI	GCTCTTC	1 cut(s)	3186
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 84
PctI	GAATGC	3 cut(s)	1252, 3266, 3333
PdmI	GAANNNNTTC	3 cut(s)	243, 2028, 3534
PflMI	CCANNNNNTGG	3 cut(s)	943, 1011, 1328
PfoI	TCCNGGA	1 cut(s)	3777
PinAI	ACCGGT	1 cut(s)	1801
PleI	GAGTC	1 cut(s)	212
PluTI	GGCGCC	1 cut(s)	4007
PpsI	GAGTC	1 cut(s)	212
PpuMI	RGGWCCY	2 cut(s)	2615, 4099
PscI	ACATGT	2 cut(s)	1084, 1390
Psp124BI	GAGCTC	2 cut(s)	147, 2908
Psp5II	RGGWCCY	2 cut(s)	2615, 4099
PspOMI	GGGCCC	1 cut(s)	3597
PspPPI	RGGWCCY	2 cut(s)	2615, 4099
PstI	CTGCAG	7 cut(s)	325, 1678, 1684, 1702, 1723, 3280, 3460
PstNI	CAGNNNCTG	6 cut(s)	329, 1874, 2806, 3509, 3650, 4060
PsuI	RGATCY	6 cut(s)	524, 638, 1163, 1202, 1778, 3058
PvuII	CAGCTG	8 cut(s)	326, 1214, 1673, 1679, 1703, 1712, 1985, 3275
RsaI	GTAC	6 cut(s)	471, 585, 762, 1420, 1731, 2319
RsaNI	GTAC	6 cut(s)	470, 584, 761, 1419, 1730, 2318
RseI	CAYNNNNRTG	6 cut(s)	789, 952, 963, 2787, 3354, 3360
SacI	GAGCTC	2 cut(s)	147, 2908
SapI	GCTCTTC	1 cut(s)	3186
ScaI	AGTACT	1 cut(s)	585
SchI	GAGTC	1 cut(s)	212
SduI	GDGCHC	8 cut(s)	147, 970, 1828, 2466, 2680, 2908, 3429, 3601
SexAI	ACCWGGT	1 cut(s)	1149
SfoI	GGCGCC	1 cut(s)	4005
SgrAI	CRCCGGYG	1 cut(s)	168
SinI	GGWCC	4 cut(s)	1533, 2372, 2615, 4099
SmiMI	CAYNNNNRTG	6 cut(s)	789, 952, 963, 2787, 3354, 3360
SmlI	CTYRAG	2 cut(s)	741, 4080
SmoI	CTYRAG	2 cut(s)	741, 4080
SphI	GCATGC	1 cut(s)	2453
SseBI	AGGCCT	2 cut(s)	4046, 4073
SspDI	GGCGCC	1 cut(s)	4003
SspI	AATATT	1 cut(s)	1768
SspMI	CTAG	4 cut(s)	522, 816, 2493, 2810
SstI	GAGCTC	2 cut(s)	147, 2908
StuI	AGGCCT	2 cut(s)	4046, 4073
StyI	CCWWGG	4 cut(s)	71, 222, 3025, 3862
TaaI	ACNGT	6 cut(s)	317, 1121, 2086, 2208, 3562, 3743
TaiI	ACGT	2 cut(s)	105, 291
TaqI	TCGA	8 cut(s)	162, 1020, 1246, 1621, 1652, 1846, 2235, 2277
TatI	WGTACW	2 cut(s)	583, 1729
TauI	GCSGC	8 cut(s)	159, 907, 3074, 3134, 3857, 3901, 3928, 4009
TscAI	CASTG	8 cut(s)	241, 1192, 1558, 1801, 2896, 2918, 3636, 3957
TseFI	GTSAC	3 cut(s)	79, 448, 1526
Tsp45I	GTSAC	3 cut(s)	79, 448, 1526
TspDTI	ATGAA	5 cut(s)	1428, 2828, 3177, 3338, 3720
TspGWI	ACGGA	3 cut(s)	97, 1833, 3461
TspRI	CASTG	8 cut(s)	241, 1192, 1558, 1801, 2896, 2918, 3636, 3957
Van91I	CCANNNNNTGG	3 cut(s)	943, 1011, 1328
VpaK11BI	GGWCC	4 cut(s)	1533, 2372, 2615, 4099
XapI	RAATTY	7 cut(s)	512, 1190, 1623, 3038, 3531, 3604, 3784
XbaI	TCTAGA	3 cut(s)	521, 815, 2492
XceI	RCATGY	4 cut(s)	1088, 1394, 1581, 2453
XcmI	CCANNNNNNNNNTGG	1 cut(s)	69
XmiI	GTMKAC	1 cut(s)	2047
XmnI	GAANNNNTTC	3 cut(s)	243, 2028, 3534
XspI	CTAG	4 cut(s)	522, 816, 2493, 2810
ZrmI	AGTACT	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.