Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011814

Physical Location & Seq

Genomic Coordinates Forward (+)

40980078 .. 40982143

Gene Structure 2066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G493100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGTCGTCCTCCGATTTACAGCTGCCGCCCGGCTTCAGGTTCCATCCGACGGACGAAGAGCTCGTGAAGCACTACCTCTGCCGCAAATGCCAGTCGCAGCCGATTTCGGTCCCGATAATCGCCGAAATCGATCTCTACAAATACAACCCCTGGGACCTCCCTGGTTTGGCGTTGTACGGTGAGAAAGAGTGGTATTTCTTTTCGCCGAGGGACCGGAAGTATCCGAACGGTTCGAGGCCGAACCGGGCGGCCGGGAGCGGGTATTGGAAGGCGACCGGAGCGGATAAGCCGATCGGGAACCCGAAACCAGTAGGGATTAAGAAGGCTTTGGTTTTCTACGCCGGAAAAGCTCCGAGAGGAGAGAAGACCAATTGGATTATGCACGAGTATCGCCTCGCCGACGTCGACCGCTCGCCTCGCAAGAAGAGCAGCAGCCTAAGGCTGGACGATTGGGTTCTGTGTCGCATATACAACAAAAAGGGCACCGTCGAGAAACAGCAGCAACAGCAACAGCAACAGCAACAGCCAACGACGACGAGTCGTATGAGCAGCGGCTCGGAATTCGAGGACAGGAAGCCGGAGAATCTGGCGTGTCCGCCGCCGGCTGCGGTAGCCCCCACTCGCCCGAACGACTACGTGTACTTCGACACGTCGGACTCTGTGCCGAGGCTGCACACGGACTCGAGCTGCTCGGAGCACGTGGTGTCGCCGGAGTTCACTTGCGAGGTGCAGAGCGAGCCCAAGTGGAAGGAGTGGGAGAAGGCCCTCGATTTTAACTACAATTACATGGACACCACTGTAGAGAACGGGTTCGGGGCGCAGTTCCAGAGCAGTAATCAGATGTCGCCGCTGCAGGATATCTTCATGTACCTACAGAAGCCGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002831 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009611 GO:0009628 GO:0009787 GO:0009788 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009968 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0047484 GO:0048316 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1900150 GO:1901000 GO:1901002 GO:1901363 GO:1901419 GO:1901420 GO:1902584 GO:1902680 GO:1903506 GO:1903508 GO:1905623 GO:1905957 GO:1905958 GO:2000024 GO:2000026 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

296

Amino Acids

33.94

Weight (kDa)

8.09

Isoelectric Point (pI)

58.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01720 AT1G77450
fragaria_vesca	FvH4_2g27430
malus_domestica	MD00G1028600.v1.1 MD15G1344900.v1.1
prunus_persica	Prupe.1G493100_v2.0.a1
pyrus_communis	pycom15g30950
rosa_chinensis	RchiOBHm_Chr6g0296281
rosa_laevigata	RLG00000011710
rosa_multiflora	Rmu_sc0004708.1_g000008 Rmu_sc0007700.1_g000001
rosa_roxburghii	Rroxscaffold_7G00171670 Rroxscaffold_7G00178400
rosa_rugosa	Rorug06G0260600
rosa_samantha	Rh6AG372300 Rh6BG380300 Rh6CG385700 Rh6DG373000
rosa_wichuraiana	Rw6G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	405
AccB1I	GGYRCC	1 cut(s)	482
AccBSI	CCGCTC	3 cut(s)	258, 281, 411
AccI	GTMKAC	1 cut(s)	405
AcoI	YGGCCR	1 cut(s)	249
AcsI	RAATTY	1 cut(s)	560
AcuI	CTGAAG	1 cut(s)	19
AcvI	CACGTG	1 cut(s)	700
AcyI	GRCGYC	1 cut(s)	402
AdeI	CACNNNGTG	1 cut(s)	703
AfaI	GTAC	3 cut(s)	176, 641, 869
AfiI	CCNNNNNNNGG	5 cut(s)	36, 49, 166, 258, 442
AflIII	ACRYGT	2 cut(s)	636, 648
AhdI	GACNNNNNGTC	1 cut(s)	537
AjiI	CACGTC	1 cut(s)	651
AjnI	CCWGG	2 cut(s)	149, 160
AluBI	AGCT	4 cut(s)	22, 61, 350, 687
AluI	AGCT	4 cut(s)	22, 61, 350, 687
Alw21I	GWGCWC	2 cut(s)	63, 699
Ama87I	CYCGRG	1 cut(s)	682
AoxI	GGCC	3 cut(s)	236, 249, 762
ApoI	RAATTY	1 cut(s)	560
Asp700I	GAANNNNTTC	1 cut(s)	809
AspLEI	GCGC	1 cut(s)	820
AspS9I	GGNCC	4 cut(s)	109, 154, 211, 763
AsuC2I	CCSGG	3 cut(s)	30, 245, 253
AsuHPI	GGTGA	1 cut(s)	191
AvaI	CYCGRG	1 cut(s)	682
AvaII	GGWCC	3 cut(s)	109, 154, 211
AxyI	CCTNAGG	1 cut(s)	437
BaeGI	GKGCMC	1 cut(s)	485
BanI	GGYRCC	1 cut(s)	482
BanII	GRGCYC	2 cut(s)	63, 741
BauI	CACGAG	2 cut(s)	62, 383
BbrPI	CACGTG	1 cut(s)	700
BbsI	GAAGAC	1 cut(s)	371
Bbv12I	GWGCWC	2 cut(s)	63, 699
BccI	CCATC	1 cut(s)	51
BceAI	ACGGC	1 cut(s)	865
BcgI	CGANNNNNNTGC	2 cut(s)	371, 405
BciT130I	CCWGG	2 cut(s)	151, 162
BciVI	GTATCC	1 cut(s)	231
BcnI	CCSGG	3 cut(s)	30, 245, 253
BfmI	CTRYAG	3 cut(s)	798, 851, 872
BfuI	GTATCC	1 cut(s)	231
Bme1390I	CCNGG	5 cut(s)	30, 151, 162, 245, 253
Bme18I	GGWCC	3 cut(s)	109, 154, 211
BmeRI	GACNNNNNGTC	1 cut(s)	537
BmeT110I	CYCGRG	1 cut(s)	682
BmgBI	CACGTC	1 cut(s)	651
BmgT120I	GGNCC	4 cut(s)	109, 154, 211, 763
BmiI	GGNNCC	6 cut(s)	41, 111, 155, 212, 299, 484
BmrFI	CCNGG	5 cut(s)	30, 151, 162, 245, 253
BpiI	GAAGAC	1 cut(s)	371
BpuMI	CCSGG	3 cut(s)	30, 245, 253
Bsa29I	ATCGAT	1 cut(s)	129
BsaAI	YACGTR	2 cut(s)	637, 700
BsaHI	GRCGYC	1 cut(s)	402
BsaJI	CCNNGG	5 cut(s)	149, 150, 160, 206, 665
BsaWI	WCCGGW	2 cut(s)	213, 275
Bsc4I	CCNNNNNNNGG	5 cut(s)	36, 49, 166, 258, 442
Bse118I	RCCGGY	1 cut(s)	601
Bse1I	ACTGG	2 cut(s)	91, 308
Bse21I	CCTNAGG	1 cut(s)	437
BseBI	CCWGG	2 cut(s)	151, 162
BseCI	ATCGAT	1 cut(s)	129
BseDI	CCNNGG	5 cut(s)	149, 150, 160, 206, 665
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	5 cut(s)	36, 49, 166, 258, 442
BseNI	ACTGG	2 cut(s)	91, 308
BseRI	GAGGAG	1 cut(s)	372
BseSI	GKGCMC	1 cut(s)	485
BseX3I	CGGCCG	1 cut(s)	249
BsgI	GTGCAG	2 cut(s)	656, 749
Bsh1285I	CGRYCG	4 cut(s)	252, 276, 294, 409
BshFI	GGCC	3 cut(s)	238, 251, 764
BshNI	GGYRCC	1 cut(s)	482
BshVI	ATCGAT	1 cut(s)	129
BsiEI	CGRYCG	4 cut(s)	252, 276, 294, 409
BsiHKAI	GWGCWC	2 cut(s)	63, 699
BsiHKCI	CYCGRG	1 cut(s)	682
BsiSI	CCGG	9 cut(s)	30, 214, 244, 252, 276, 342, 578, 602, 710
BslFI	GGGAC	3 cut(s)	95, 167, 224
BslI	CCNNNNNNNGG	5 cut(s)	36, 49, 166, 258, 442
BsmFI	GGGAC	3 cut(s)	95, 167, 224
BsnI	GGCC	3 cut(s)	238, 251, 764
BsoBI	CYCGRG	1 cut(s)	682
Bsp1286I	GDGCHC	4 cut(s)	63, 485, 699, 741
Bsp143I	GATC	2 cut(s)	130, 291
BspANI	GGCC	3 cut(s)	238, 251, 764
BspDI	ATCGAT	1 cut(s)	129
BspLI	GGNNCC	6 cut(s)	41, 111, 155, 212, 299, 484
BspMAI	CTGCAG	1 cut(s)	855
BspQI	GCTCTTC	2 cut(s)	51, 419
BspT107I	GGYRCC	1 cut(s)	482
BsrBI	CCGCTC	3 cut(s)	258, 281, 411
BsrFI	RCCGGY	1 cut(s)	601
BsrI	ACTGG	2 cut(s)	91, 308
BssAI	RCCGGY	1 cut(s)	601
BssECI	CCNNGG	5 cut(s)	149, 150, 160, 206, 665
BssMI	GATC	2 cut(s)	130, 291
BssNI	GRCGYC	1 cut(s)	402
BssSI	CACGAG	2 cut(s)	62, 383
Bst2BI	CACGAG	2 cut(s)	62, 383
Bst2UI	CCWGG	2 cut(s)	151, 162
Bst4CI	ACNGT	4 cut(s)	179, 230, 487, 799
Bst6I	CTCTTC	2 cut(s)	51, 419
BstACI	GRCGYC	1 cut(s)	402
BstBAI	YACGTR	2 cut(s)	637, 700
BstC8I	GCNNGC	3 cut(s)	413, 603, 737
BstDEI	CTNAG	1 cut(s)	437
BstF5I	GGATG	1 cut(s)	43
BstHHI	GCGC	1 cut(s)	820
BstKTI	GATC	2 cut(s)	133, 294
BstMBI	GATC	2 cut(s)	130, 291
BstMCI	CGRYCG	4 cut(s)	252, 276, 294, 409
BstNI	CCWGG	2 cut(s)	151, 162
BstSCI	CCNGG	5 cut(s)	28, 149, 160, 243, 251
BstSFI	CTRYAG	3 cut(s)	798, 851, 872
BstSLI	GKGCMC	1 cut(s)	485
BstV2I	GAAGAC	1 cut(s)	371
BstZI	CGGCCG	1 cut(s)	249
Bsu15I	ATCGAT	1 cut(s)	129
Bsu36I	CCTNAGG	1 cut(s)	437
BsuI	GTATCC	1 cut(s)	231
BsuRI	GGCC	3 cut(s)	238, 251, 764
BsuTUI	ATCGAT	1 cut(s)	129
BtrI	CACGTC	1 cut(s)	651
BtsCI	GGATG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	795
Cac8I	GCNNGC	3 cut(s)	413, 603, 737
CfoI	GCGC	1 cut(s)	820
Cfr10I	RCCGGY	1 cut(s)	601
Cfr13I	GGNCC	4 cut(s)	109, 154, 211, 763
ClaI	ATCGAT	1 cut(s)	129
Csp6I	GTAC	3 cut(s)	175, 640, 868
CviAII	CATG	2 cut(s)	787, 865
CviQI	GTAC	3 cut(s)	175, 640, 868
DdeI	CTNAG	1 cut(s)	437
DpnI	GATC	2 cut(s)	132, 293
DpnII	GATC	2 cut(s)	130, 291
DraIII	CACNNNGTG	1 cut(s)	703
DriI	GACNNNNNGTC	1 cut(s)	537
EaeI	YGGCCR	1 cut(s)	249
EagI	CGGCCG	1 cut(s)	249
Eam1104I	CTCTTC	2 cut(s)	51, 419
Eam1105I	GACNNNNNGTC	1 cut(s)	537
EarI	CTCTTC	2 cut(s)	51, 419
EciI	GGCGGA	1 cut(s)	585
Ecl136II	GAGCTC	1 cut(s)	61
EclXI	CGGCCG	1 cut(s)	249
Eco24I	GRGCYC	2 cut(s)	63, 741
Eco32I	GATATC	1 cut(s)	859
Eco47I	GGWCC	3 cut(s)	109, 154, 211
Eco52I	CGGCCG	1 cut(s)	249
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	19
Eco72I	CACGTG	1 cut(s)	700
Eco81I	CCTNAGG	1 cut(s)	437
Eco88I	CYCGRG	1 cut(s)	682
EcoICRI	GAGCTC	1 cut(s)	61
EcoO109I	RGGNCCY	2 cut(s)	154, 763
EcoRI	GAATTC	1 cut(s)	560
EcoRII	CCWGG	2 cut(s)	149, 160
EcoRV	GATATC	1 cut(s)	859
EcoT38I	GRGCYC	2 cut(s)	63, 741
FaeI	CATG	2 cut(s)	790, 868
FaiI	YATR	6 cut(s)	380, 467, 469, 545, 788, 866
FaqI	GGGAC	3 cut(s)	95, 167, 224
FatI	CATG	2 cut(s)	786, 864
FauI	CCCGC	1 cut(s)	251
FblI	GTMKAC	1 cut(s)	405
FokI	GGATG	1 cut(s)	30
FriOI	GRGCYC	2 cut(s)	63, 741
GlaI	GCGC	1 cut(s)	819
HaeIII	GGCC	3 cut(s)	238, 251, 764
HapII	CCGG	9 cut(s)	30, 214, 244, 252, 276, 342, 578, 602, 710
HhaI	GCGC	1 cut(s)	820
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	2 cut(s)	790, 868
Hin6I	GCGC	1 cut(s)	818
HinP1I	GCGC	1 cut(s)	818
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	4 cut(s)	538, 583, 656, 680
HpaII	CCGG	9 cut(s)	30, 214, 244, 252, 276, 342, 578, 602, 710
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	3 cut(s)	406, 640, 717
Hpy188I	TCNGA	8 cut(s)	13, 48, 225, 354, 559, 655, 694, 840
Hpy188III	TCNNGA	5 cut(s)	64, 112, 295, 490, 826
Hpy8I	GTNNAC	3 cut(s)	406, 640, 717
Hpy99I	CGWCG	7 cut(s)	52, 404, 407, 491, 535, 538, 655
HpyAV	CCTTC	4 cut(s)	262, 316, 742, 754
HpyCH4III	ACNGT	4 cut(s)	179, 230, 487, 799
HpyCH4IV	ACGT	4 cut(s)	402, 636, 650, 699
HpyCH4V	TGCA	4 cut(s)	382, 673, 730, 853
HpyF3I	CTNAG	1 cut(s)	437
HpySE526I	ACGT	4 cut(s)	402, 636, 650, 699
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	2 cut(s)	790, 868
HspAI	GCGC	1 cut(s)	818
KroI	GCCGGC	1 cut(s)	601
KroNI	GCCGGC	1 cut(s)	603
Kzo9I	GATC	2 cut(s)	130, 291
LguI	GCTCTTC	2 cut(s)	51, 419
LmnI	GCTCC	4 cut(s)	255, 278, 355, 694
MaeII	ACGT	4 cut(s)	402, 636, 650, 699
MalI	GATC	2 cut(s)	132, 293
MbiI	CCGCTC	3 cut(s)	258, 281, 411
MboI	GATC	2 cut(s)	130, 291
MboII	GAAGA	4 cut(s)	68, 376, 436, 853
MfeI	CAATTG	1 cut(s)	370
MhlI	GDGCHC	4 cut(s)	63, 485, 699, 741
MluCI	AATT	3 cut(s)	370, 560, 781
MlyI	GAGTC	3 cut(s)	547, 650, 674
MmeI	TCCRAC	2 cut(s)	71, 633
MroNI	GCCGGC	1 cut(s)	601
MroXI	GAANNNNTTC	1 cut(s)	809
MseI	TTAA	2 cut(s)	318, 774
MspA1I	CMGCKG	3 cut(s)	22, 552, 850
MspI	CCGG	9 cut(s)	30, 214, 244, 252, 276, 342, 578, 602, 710
MspR9I	CCNGG	5 cut(s)	30, 151, 162, 245, 253
MunI	CAATTG	1 cut(s)	370
MvaI	CCWGG	2 cut(s)	151, 162
NaeI	GCCGGC	1 cut(s)	603
NciI	CCSGG	3 cut(s)	30, 245, 253
NdeII	GATC	2 cut(s)	130, 291
NgoMIV	GCCGGC	1 cut(s)	601
NlaIII	CATG	2 cut(s)	790, 868
NlaIV	GGNNCC	6 cut(s)	41, 111, 155, 212, 299, 484
NmeAIII	GCCGAG	2 cut(s)	231, 690
PaeR7I	CTCGAG	1 cut(s)	682
PasI	CCCWGGG	1 cut(s)	150
PciSI	GCTCTTC	2 cut(s)	51, 419
PcsI	WCGNNNNNNNCGW	4 cut(s)	60, 126, 402, 642
PdiI	GCCGGC	1 cut(s)	603
PdmI	GAANNNNTTC	1 cut(s)	809
PfeI	GAWTC	1 cut(s)	583
Ple19I	CGATCG	1 cut(s)	294
PleI	GAGTC	3 cut(s)	546, 650, 674
PmaCI	CACGTG	1 cut(s)	700
PmlI	CACGTG	1 cut(s)	700
PpsI	GAGTC	3 cut(s)	546, 650, 674
Ppu21I	YACGTR	2 cut(s)	637, 700
PpuMI	RGGWCCY	1 cut(s)	154
Psp124BI	GAGCTC	1 cut(s)	63
Psp5II	RGGWCCY	1 cut(s)	154
Psp6I	CCWGG	2 cut(s)	149, 160
PspCI	CACGTG	1 cut(s)	700
PspGI	CCWGG	2 cut(s)	149, 160
PspN4I	GGNNCC	6 cut(s)	41, 111, 155, 212, 299, 484
PspPI	GGNCC	4 cut(s)	109, 154, 211, 763
PspPPI	RGGWCCY	1 cut(s)	154
PspXI	VCTCGAGB	1 cut(s)	682
PstI	CTGCAG	1 cut(s)	855
PvuI	CGATCG	1 cut(s)	294
PvuII	CAGCTG	1 cut(s)	22
RsaI	GTAC	3 cut(s)	176, 641, 869
RsaNI	GTAC	3 cut(s)	175, 640, 868
SacI	GAGCTC	1 cut(s)	63
SalI	GTCGAC	1 cut(s)	404
SapI	GCTCTTC	2 cut(s)	51, 419
SaqAI	TTAA	2 cut(s)	318, 774
Sau3AI	GATC	2 cut(s)	130, 291
Sau96I	GGNCC	4 cut(s)	109, 154, 211, 763
SchI	GAGTC	3 cut(s)	547, 650, 674
ScrFI	CCNGG	5 cut(s)	30, 151, 162, 245, 253
SduI	GDGCHC	4 cut(s)	63, 485, 699, 741
SfcI	CTRYAG	3 cut(s)	798, 851, 872
Sfr274I	CTCGAG	1 cut(s)	682
SinI	GGWCC	3 cut(s)	109, 154, 211
SlaI	CTCGAG	1 cut(s)	682
SmlI	CTYRAG	1 cut(s)	682
SmoI	CTYRAG	1 cut(s)	682
Sse9I	AATT	3 cut(s)	370, 560, 781
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	5 cut(s)	28, 149, 160, 243, 251
TaaI	ACNGT	4 cut(s)	179, 230, 487, 799
TaiI	ACGT	4 cut(s)	405, 639, 653, 702
TaqI	TCGA	8 cut(s)	129, 233, 405, 489, 564, 645, 683, 768
TaqII	GACCGA	1 cut(s)	97
TasI	AATT	3 cut(s)	370, 560, 781
TatI	WGTACW	1 cut(s)	639
TauI	GCSGC	6 cut(s)	28, 84, 251, 555, 601, 850
TfiI	GAWTC	1 cut(s)	583
Tru1I	TTAA	2 cut(s)	318, 774
Tru9I	TTAA	2 cut(s)	318, 774
TscAI	CASTG	1 cut(s)	802
TspDTI	ATGAA	1 cut(s)	853
TspGWI	ACGGA	2 cut(s)	65, 692
TspRI	CASTG	1 cut(s)	802
VpaK11BI	GGWCC	3 cut(s)	109, 154, 211
XapI	RAATTY	1 cut(s)	560
XhoI	CTCGAG	1 cut(s)	682
XmiI	GTMKAC	1 cut(s)	405
XmnI	GAANNNNTTC	1 cut(s)	809
ZraI	GACGTC	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.