FvH4_2g27430
NAC Family

NAC domain-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
21786562 .. 21788639
2078 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g27430.t1

Sequence Viewer

Length: 870 bp
ATGTCGTCGGAGTTACAGTTACCCCCAGGCTTCCGGTTCCACCCCACCGACGAGGAGCTCGTGAAGCACTACCTCTGCCGCAAATGTCTGTCCCAACCAATCTCGGTTCCGATAATTGCCGAAATCGATCTCTATAAATACGACCCCTGGGAGCTCCCTGGTTTGGCTTTGTATGGAGAGAAAGAGTGGTATTTCTTTTCACCAAGGGACCGGAAATACCCAAACGGTTCAAGGCCGAACCGGGCGGCCGGGAGCGGGTACTGGAAGGCGACCGGAGCCGATAAGCCGATTGGGCTTCCAAAACCGGTCGGGATTAAAAAGGCTCTGGTGTTCTACGCCGGAAAAGCACCGAGGGGAGAGAAGACCAATTGGATCATGCACGAGTATCGCCTCGCCGACGTGGATCGAACACCGCGCAAGAAAAACAGCTTGAGGCTGGACGATTGGGTTCTGTGCCGCATATACAACAAGAAAGGCACGGCGGGGAAGGTACAGCCGCCGATGAGTCAGCAGGCGATCAGCGGCGGCTCGGAGTTCGAGGACGTGAAGCCGAAGAATCTGATGGCGTGCGCACTCCCTCCACCAGCGGCGGTGGCGCCCACGCGCCCGAGTGAGTACGTGTACTTGGAGAATTCCGACTCGGTGCCGAGGCTGCACACGGACTCGAGCTGCTCGGAGCATGTGGTGTCCCCGGAGTTCACGAGCGAGGTGCAGAGCGAGCCCAAGTGGAAGGAGTGGGAGAGAGCCCTTGATTTTCCGTATAATTACGAGGATGCCACTATGGGAAATGGTTTCGGCGCGCAGTTCCAGGGCGGGAATCAGATGTCGCCGCTTCAGGACATCTTCATGTTCCTGCAGAAGCCGTATTGA

Protein Analysis

290

Amino Acids

32.8

Weight (kDa)

8.14

Isoelectric Point (pI)

48.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 8 - 131 1.4e-49 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011814)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 571
AccB1I GGYRCC 2 cut(s) 595, 643
AccBSI CCGCTC 1 cut(s) 255
AccII CGCG 3 cut(s) 415, 604, 800
AclWI GGATC 2 cut(s) 380, 411
AcoI YGGCCR 1 cut(s) 246
AcsI RAATTY 1 cut(s) 631
AcuI CTGAAG 1 cut(s) 818
AcyI GRCGYC 1 cut(s) 596
AfaI GTAC 4 cut(s) 260, 492, 617, 623
AfiI CCNNNNNNNGG 2 cut(s) 163, 255
AflIII ACRYGT 1 cut(s) 618
AgeI ACCGGT 1 cut(s) 304
AgsI TTSAA 1 cut(s) 231
AjiI CACGTC 2 cut(s) 400, 544
AjnI CCWGG 4 cut(s) 25, 146, 157, 807
AluBI AGCT 4 cut(s) 58, 154, 429, 669
AluI AGCT 4 cut(s) 58, 154, 429, 669
Alw21I GWGCWC 2 cut(s) 60, 156
AlwI GGATC 2 cut(s) 380, 411
Ama87I CYCGRG 2 cut(s) 607, 664
AoxI GGCC 2 cut(s) 233, 246
ApeKI GCWGC 2 cut(s) 652, 669
ApoI RAATTY 1 cut(s) 631
AsiGI ACCGGT 1 cut(s) 304
AspLEI GCGC 6 cut(s) 417, 572, 598, 606, 800, 802
AspS9I GGNCC 1 cut(s) 208
AsuC2I CCSGG 3 cut(s) 242, 250, 692
AsuHPI GGTGA 1 cut(s) 192
AvaI CYCGRG 2 cut(s) 607, 664
AvaII GGWCC 1 cut(s) 208
BanI GGYRCC 2 cut(s) 595, 643
BanII GRGCYC 4 cut(s) 60, 156, 723, 748
BauI CACGAG 3 cut(s) 59, 380, 700
BbsI GAAGAC 1 cut(s) 368
Bbv12I GWGCWC 2 cut(s) 60, 156
BbvI GCAGC 2 cut(s) 639, 656
BccI CCATC 1 cut(s) 556
BceAI ACGGC 2 cut(s) 495, 847
BcgI CGANNNNNNTGC 4 cut(s) 368, 402, 691, 725
BciT130I CCWGG 4 cut(s) 27, 148, 159, 809
BcnI CCSGG 3 cut(s) 242, 250, 692
BfmI CTRYAG 1 cut(s) 854
BfoI RGCGCY 1 cut(s) 599
BglI GCCNNNNNGGC 1 cut(s) 292
Bme1390I CCNGG 7 cut(s) 27, 148, 159, 242, 250, 692, 809
Bme18I GGWCC 1 cut(s) 208
BmeT110I CYCGRG 2 cut(s) 607, 664
BmgBI CACGTC 2 cut(s) 400, 544
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 6 cut(s) 38, 108, 209, 277, 597, 645
BmrFI CCNGG 7 cut(s) 27, 148, 159, 242, 250, 692, 809
BmsI GCATC 1 cut(s) 763
BpiI GAAGAC 1 cut(s) 368
BpuEI CTTGAG 1 cut(s) 451
BpuMI CCSGG 3 cut(s) 242, 250, 692
Bsa29I ATCGAT 1 cut(s) 126
BsaAI YACGTR 1 cut(s) 619
BsaHI GRCGYC 1 cut(s) 596
BsaJI CCNNGG 9 cut(s) 25, 146, 147, 157, 203, 350, 647, 690, 808
BsaWI WCCGGW 4 cut(s) 33, 210, 272, 304
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 255
Bse118I RCCGGY 1 cut(s) 304
Bse1I ACTGG 1 cut(s) 266
BseBI CCWGG 4 cut(s) 27, 148, 159, 809
BseCI ATCGAT 1 cut(s) 126
BseDI CCNNGG 9 cut(s) 25, 146, 147, 157, 203, 350, 647, 690, 808
BseGI GGATG 1 cut(s) 778
BseLI CCNNNNNNNGG 2 cut(s) 163, 255
BseNI ACTGG 1 cut(s) 266
BsePI GCGCGC 1 cut(s) 798
BseRI GAGGAG 1 cut(s) 68
BseX3I CGGCCG 1 cut(s) 246
BseXI GCAGC 2 cut(s) 639, 656
BsgI GTGCAG 2 cut(s) 638, 731
Bsh1236I CGCG 3 cut(s) 415, 604, 800
Bsh1285I CGRYCG 3 cut(s) 249, 273, 309
BshFI GGCC 2 cut(s) 235, 248
BshNI GGYRCC 2 cut(s) 595, 643
BshTI ACCGGT 1 cut(s) 304
BshVI ATCGAT 1 cut(s) 126
BsiEI CGRYCG 3 cut(s) 249, 273, 309
BsiHKAI GWGCWC 2 cut(s) 60, 156
BsiHKCI CYCGRG 2 cut(s) 607, 664
BsiSI CCGG 8 cut(s) 34, 211, 241, 249, 273, 305, 339, 692
BslFI GGGAC 3 cut(s) 76, 221, 673
BslI CCNNNNNNNGG 2 cut(s) 163, 255
BsmFI GGGAC 3 cut(s) 76, 221, 673
BsnI GGCC 2 cut(s) 235, 248
BsoBI CYCGRG 2 cut(s) 607, 664
Bsp1286I GDGCHC 4 cut(s) 60, 156, 723, 748
Bsp143I GATC 4 cut(s) 127, 372, 403, 516
BspANI GGCC 2 cut(s) 235, 248
BspDI ATCGAT 1 cut(s) 126
BspFNI CGCG 3 cut(s) 415, 604, 800
BspLI GGNNCC 6 cut(s) 38, 108, 209, 277, 597, 645
BspMAI CTGCAG 1 cut(s) 858
BspPI GGATC 2 cut(s) 380, 411
BspT107I GGYRCC 2 cut(s) 595, 643
BsrBI CCGCTC 1 cut(s) 255
BsrFI RCCGGY 1 cut(s) 304
BsrI ACTGG 1 cut(s) 266
BssAI RCCGGY 1 cut(s) 304
BssECI CCNNGG 9 cut(s) 25, 146, 147, 157, 203, 350, 647, 690, 808
BssHII GCGCGC 1 cut(s) 798
BssMI GATC 4 cut(s) 127, 372, 403, 516
BssNI GRCGYC 1 cut(s) 596
BssSI CACGAG 3 cut(s) 59, 380, 700
BssT1I CCWWGG 1 cut(s) 203
Bst2BI CACGAG 3 cut(s) 59, 380, 700
Bst2UI CCWGG 4 cut(s) 27, 148, 159, 809
Bst4CI ACNGT 2 cut(s) 18, 227
BstACI GRCGYC 1 cut(s) 596
BstBAI YACGTR 1 cut(s) 619
BstC8I GCNNGC 4 cut(s) 513, 568, 719, 800
BstF5I GGATG 1 cut(s) 778
BstFNI CGCG 3 cut(s) 415, 604, 800
BstH2I RGCGCY 1 cut(s) 599
BstHHI GCGC 6 cut(s) 417, 572, 598, 606, 800, 802
BstKTI GATC 4 cut(s) 130, 375, 406, 519
BstMBI GATC 4 cut(s) 127, 372, 403, 516
BstMCI CGRYCG 3 cut(s) 249, 273, 309
BstMWI GCNNNNNNNGC 7 cut(s) 64, 275, 292, 344, 593, 652, 718
BstNI CCWGG 4 cut(s) 27, 148, 159, 809
BstNSI RCATGY 1 cut(s) 683
BstSCI CCNGG 7 cut(s) 25, 146, 157, 240, 248, 690, 807
BstSFI CTRYAG 1 cut(s) 854
BstUI CGCG 3 cut(s) 415, 604, 800
BstV1I GCAGC 2 cut(s) 639, 656
BstV2I GAAGAC 1 cut(s) 368
BstZI CGGCCG 1 cut(s) 246
Bsu15I ATCGAT 1 cut(s) 126
BsuRI GGCC 2 cut(s) 235, 248
BsuTUI ATCGAT 1 cut(s) 126
BtrI CACGTC 2 cut(s) 400, 544
BtsCI GGATG 1 cut(s) 778
Cac8I GCNNGC 4 cut(s) 513, 568, 719, 800
CfoI GCGC 6 cut(s) 417, 572, 598, 606, 800, 802
Cfr10I RCCGGY 1 cut(s) 304
Cfr13I GGNCC 1 cut(s) 208
ClaI ATCGAT 1 cut(s) 126
Csp6I GTAC 4 cut(s) 259, 491, 616, 622
CspAI ACCGGT 1 cut(s) 304
CviAII CATG 3 cut(s) 376, 680, 847
CviQI GTAC 4 cut(s) 259, 491, 616, 622
DinI GGCGCC 1 cut(s) 597
DpnI GATC 4 cut(s) 129, 374, 405, 518
DpnII GATC 4 cut(s) 127, 372, 403, 516
EaeI YGGCCR 1 cut(s) 246
EagI CGGCCG 1 cut(s) 246
Ecl136II GAGCTC 2 cut(s) 58, 154
EclXI CGGCCG 1 cut(s) 246
Eco130I CCWWGG 1 cut(s) 203
Eco24I GRGCYC 4 cut(s) 60, 156, 723, 748
Eco47I GGWCC 1 cut(s) 208
Eco52I CGGCCG 1 cut(s) 246
Eco53kI GAGCTC 2 cut(s) 58, 154
Eco57I CTGAAG 1 cut(s) 818
Eco88I CYCGRG 2 cut(s) 607, 664
EcoICRI GAGCTC 2 cut(s) 58, 154
EcoRI GAATTC 1 cut(s) 631
EcoRII CCWGG 4 cut(s) 25, 146, 157, 807
EcoT14I CCWWGG 1 cut(s) 203
EcoT38I GRGCYC 4 cut(s) 60, 156, 723, 748
EgeI GGCGCC 1 cut(s) 597
EheI GGCGCC 1 cut(s) 597
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 3 cut(s) 379, 683, 850
FaiI YATR 9 cut(s) 135, 174, 377, 461, 463, 681, 762, 782, 848
FaqI GGGAC 3 cut(s) 76, 221, 673
FatI CATG 3 cut(s) 375, 679, 846
FauI CCCGC 3 cut(s) 248, 475, 806
FokI GGATG 1 cut(s) 785
FriOI GRGCYC 4 cut(s) 60, 156, 723, 748
FspAI RTGCGCAY 1 cut(s) 571
FspI TGCGCA 1 cut(s) 571
GlaI GCGC 6 cut(s) 416, 571, 597, 605, 799, 801
HaeII RGCGCY 1 cut(s) 599
HaeIII GGCC 2 cut(s) 235, 248
HapII CCGG 8 cut(s) 34, 211, 241, 249, 273, 305, 339, 692
HhaI GCGC 6 cut(s) 417, 572, 598, 606, 800, 802
Hin1I GRCGYC 1 cut(s) 596
Hin1II CATG 3 cut(s) 379, 683, 850
Hin6I GCGC 6 cut(s) 415, 570, 596, 604, 798, 800
HinP1I GCGC 6 cut(s) 415, 570, 596, 604, 798, 800
HinfI GANTC 5 cut(s) 505, 556, 638, 662, 817
HpaII CCGG 8 cut(s) 34, 211, 241, 249, 273, 305, 339, 692
HphI GGTGA 1 cut(s) 192
Hpy166II GTNNAC 2 cut(s) 622, 699
Hpy188I TCNGA 7 cut(s) 10, 111, 532, 561, 637, 676, 822
Hpy188III TCNNGA 4 cut(s) 61, 310, 700, 836
Hpy8I GTNNAC 2 cut(s) 622, 699
Hpy99I CGWCG 3 cut(s) 10, 53, 401
HpyAV CCTTC 3 cut(s) 259, 481, 724
HpyCH4III ACNGT 2 cut(s) 18, 227
HpyCH4IV ACGT 3 cut(s) 399, 543, 618
HpyCH4V TGCA 4 cut(s) 379, 655, 712, 856
HpyF10VI GCNNNNNNNGC 7 cut(s) 64, 275, 292, 344, 593, 652, 718
HpySE526I ACGT 3 cut(s) 399, 543, 618
Hsp92I GRCGYC 1 cut(s) 596
Hsp92II CATG 3 cut(s) 379, 683, 850
HspAI GCGC 6 cut(s) 415, 570, 596, 604, 798, 800
KasI GGCGCC 1 cut(s) 595
Kzo9I GATC 4 cut(s) 127, 372, 403, 516
LmnI GCTCC 6 cut(s) 55, 151, 159, 252, 275, 676
Lsp1109I GCAGC 2 cut(s) 639, 656
LweI GCATC 1 cut(s) 763
MaeII ACGT 3 cut(s) 399, 543, 618
MaeIII GTNAC 2 cut(s) 12, 18
MalI GATC 4 cut(s) 129, 374, 405, 518
MbiI CCGCTC 1 cut(s) 255
MboI GATC 4 cut(s) 127, 372, 403, 516
MboII GAAGA 3 cut(s) 373, 565, 835
MfeI CAATTG 1 cut(s) 367
MhlI GDGCHC 4 cut(s) 60, 156, 723, 748
MluCI AATT 4 cut(s) 114, 367, 631, 763
Mly113I GGCGCC 1 cut(s) 596
MlyI GAGTC 3 cut(s) 514, 632, 656
MmeI TCCRAC 1 cut(s) 660
MseI TTAA 1 cut(s) 315
MslI CAYNNNNRTG 1 cut(s) 845
MspA1I CMGCKG 2 cut(s) 522, 587
MspI CCGG 8 cut(s) 34, 211, 241, 249, 273, 305, 339, 692
MspR9I CCNGG 7 cut(s) 27, 148, 159, 242, 250, 692, 809
MunI CAATTG 1 cut(s) 367
MvaI CCWGG 4 cut(s) 27, 148, 159, 809
MvnI CGCG 3 cut(s) 415, 604, 800
MwoI GCNNNNNNNGC 7 cut(s) 64, 275, 292, 344, 593, 652, 718
NarI GGCGCC 1 cut(s) 596
NciI CCSGG 3 cut(s) 242, 250, 692
NdeII GATC 4 cut(s) 127, 372, 403, 516
NlaIII CATG 3 cut(s) 379, 683, 850
NlaIV GGNNCC 6 cut(s) 38, 108, 209, 277, 597, 645
NmeAIII GCCGAG 1 cut(s) 672
NsbI TGCGCA 1 cut(s) 571
NspI RCATGY 1 cut(s) 683
PaeR7I CTCGAG 1 cut(s) 664
PasI CCCWGGG 1 cut(s) 147
PauI GCGCGC 1 cut(s) 798
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PfeI GAWTC 2 cut(s) 556, 817
PinAI ACCGGT 1 cut(s) 304
PleI GAGTC 3 cut(s) 513, 632, 656
PluTI GGCGCC 1 cut(s) 599
PpsI GAGTC 3 cut(s) 513, 632, 656
Ppu21I YACGTR 1 cut(s) 619
Psp124BI GAGCTC 2 cut(s) 60, 156
Psp6I CCWGG 4 cut(s) 25, 146, 157, 807
PspGI CCWGG 4 cut(s) 25, 146, 157, 807
PspN4I GGNNCC 6 cut(s) 38, 108, 209, 277, 597, 645
PspPI GGNCC 1 cut(s) 208
PspXI VCTCGAGB 1 cut(s) 664
PstI CTGCAG 1 cut(s) 858
PteI GCGCGC 1 cut(s) 798
RsaI GTAC 4 cut(s) 260, 492, 617, 623
RsaNI GTAC 4 cut(s) 259, 491, 616, 622
RseI CAYNNNNRTG 1 cut(s) 845
SacI GAGCTC 2 cut(s) 60, 156
SaqAI TTAA 1 cut(s) 315
Sau3AI GATC 4 cut(s) 127, 372, 403, 516
Sau96I GGNCC 1 cut(s) 208
SchI GAGTC 3 cut(s) 514, 632, 656
ScrFI CCNGG 7 cut(s) 27, 148, 159, 242, 250, 692, 809
SduI GDGCHC 4 cut(s) 60, 156, 723, 748
SfaNI GCATC 1 cut(s) 763
SfcI CTRYAG 1 cut(s) 854
SfoI GGCGCC 1 cut(s) 597
Sfr274I CTCGAG 1 cut(s) 664
SinI GGWCC 1 cut(s) 208
SlaI CTCGAG 1 cut(s) 664
SmiMI CAYNNNNRTG 1 cut(s) 845
SmlI CTYRAG 2 cut(s) 430, 664
SmoI CTYRAG 2 cut(s) 430, 664
Sse9I AATT 4 cut(s) 114, 367, 631, 763
SspDI GGCGCC 1 cut(s) 595
SstI GAGCTC 2 cut(s) 60, 156
StyD4I CCNGG 7 cut(s) 25, 146, 157, 240, 248, 690, 807
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 2 cut(s) 18, 227
TaiI ACGT 3 cut(s) 402, 546, 621
TaqI TCGA 4 cut(s) 126, 406, 537, 665
TasI AATT 4 cut(s) 114, 367, 631, 763
TatI WGTACW 1 cut(s) 621
TauI GCSGC 8 cut(s) 81, 248, 459, 499, 525, 528, 590, 832
TfiI GAWTC 2 cut(s) 556, 817
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TseI GCWGC 2 cut(s) 652, 669
TspDTI ATGAA 1 cut(s) 835
TspGWI ACGGA 2 cut(s) 674, 747
VpaK11BI GGWCC 1 cut(s) 208
XapI RAATTY 1 cut(s) 631
XceI RCATGY 1 cut(s) 683
XhoI CTCGAG 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.