Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0011814

Physical Location & Seq

Genomic Coordinates Forward (+)

11975742 .. 11977466

Gene Structure 1725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00171670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGTCGTCGTCGGAGTTACAGTTACCCCCAGGCTTCCGGTTCCACCCGACCGACGAAGAGCTCGTCAAGCACTACCTCTGCCGGAAATGCCAGTCCCAACCGATCTCTGTTCCTATCATCGCCGAAATCGATCTCTACAAATACGACCCCTGGGAGCTCCCTGGTTTGGCTCTGTACGGAGAGAAGGAGTGGTATTTCTTTTCGCCGAGGGACCGGAAATACCCGAACGGTTCAAGGCCAAACCGGGCTGCCGGGAGCGGGTACTGGAAGGCGACCGGAGCCGATAAGCCGATCGGGCTTCCGAAGCCTGTCGGGATTAAAAAGGCTTTGGTATTCTACGCCGGAAAAGCCCCGAGAGGAGAGAAGACCAATTGGATTATGCACGAGTATCGCCTTGCCGACGTGGATCGAACGCCTCGCAAGAGAAACAGCTTAAGGTTGGACGATTGGGTTCTGTGCCGCATATACAACAAAAAGGGGACGGCGGAGAAGCAACAAGCGCCGATGAGTCGGAAGGCGGTGAGCGGCGGGTCGGAATTCGAGGACGTGAAGCCGGAGAATCTGATGGCGTGCCCACCACCGCCGCCGGCGGCGGTGGTGGCCACGCGCCCGAGTGAGTACGTGTACTTTGACAACTCGGATTCGGTGCCGCGGCTGCACACGGACTCGAGCTGCTCGGAGCAGGTGGTGTCGCCGGAGTTCACGAGCGAGGTGCAGAGCGAGCCCAAGTGGAAGGAGTGGGAGAAGGCCCTTGATTTTCCTTACAATTACGGGGATACCACCGTGGAAAACGGGGGATTCGGGGCGCAGTTTCAGGGTGGGAATCAGATGTCGCCGCTGCAGGATATTTTCATGTACCTGCAGAAGCCGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002831 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009611 GO:0009628 GO:0009787 GO:0009788 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009968 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0047484 GO:0048316 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1900150 GO:1901000 GO:1901002 GO:1901363 GO:1901419 GO:1901420 GO:1902584 GO:1902680 GO:1903506 GO:1903508 GO:1905623 GO:1905957 GO:1905958 GO:2000024 GO:2000026 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

291

Amino Acids

33.09

Weight (kDa)

7.58

Isoelectric Point (pI)

54.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	9 - 132	7.2e-50	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01720 AT1G77450
fragaria_vesca	FvH4_2g27430
malus_domestica	MD00G1028600.v1.1 MD15G1344900.v1.1
prunus_persica	Prupe.1G493100_v2.0.a1
pyrus_communis	pycom15g30950
rosa_chinensis	RchiOBHm_Chr6g0296281
rosa_laevigata	RLG00000011710
rosa_multiflora	Rmu_sc0004708.1_g000008 Rmu_sc0007700.1_g000001
rosa_roxburghii	Rroxscaffold_7G00171670 Rroxscaffold_7G00178400
rosa_rugosa	Rorug06G0260600
rosa_samantha	Rh6AG372300 Rh6BG380300 Rh6CG385700 Rh6DG373000
rosa_wichuraiana	Rw6G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	673
Acc36I	ACCTGC	2 cut(s)	673, 867
AccB1I	GGYRCC	1 cut(s)	646
AccBSI	CCGCTC	2 cut(s)	258, 525
AccII	CGCG	2 cut(s)	607, 652
AclWI	GGATC	1 cut(s)	414
AcoI	YGGCCR	1 cut(s)	600
AcsI	RAATTY	1 cut(s)	536
AfaI	GTAC	5 cut(s)	176, 263, 620, 626, 857
AfiI	CCNNNNNNNGG	2 cut(s)	166, 258
AflII	CTTAAG	1 cut(s)	433
AflIII	ACRYGT	1 cut(s)	621
AgsI	TTSAA	1 cut(s)	234
AjiI	CACGTC	2 cut(s)	403, 547
AjnI	CCWGG	3 cut(s)	28, 149, 160
AluBI	AGCT	4 cut(s)	61, 157, 432, 672
AluI	AGCT	4 cut(s)	61, 157, 432, 672
Alw21I	GWGCWC	2 cut(s)	63, 159
AlwI	GGATC	1 cut(s)	414
Ama87I	CYCGRG	3 cut(s)	352, 610, 667
AoxI	GGCC	3 cut(s)	236, 600, 747
ApeKI	GCWGC	4 cut(s)	248, 655, 672, 838
ApoI	RAATTY	1 cut(s)	536
ArsI	GACNNNNNNTTYG	2 cut(s)	48, 80
AspLEI	GCGC	3 cut(s)	502, 609, 808
AspS9I	GGNCC	2 cut(s)	211, 748
AsuC2I	CCSGG	2 cut(s)	245, 253
AsuHPI	GGTGA	1 cut(s)	532
AvaI	CYCGRG	3 cut(s)	352, 610, 667
AvaII	GGWCC	1 cut(s)	211
BaeGI	GKGCMC	1 cut(s)	575
BaeI	ACNNNNGTAYC	2 cut(s)	768, 801
BalI	TGGCCA	1 cut(s)	602
BanI	GGYRCC	1 cut(s)	646
BanII	GRGCYC	3 cut(s)	63, 159, 726
BauI	CACGAG	2 cut(s)	383, 703
BbsI	GAAGAC	1 cut(s)	371
Bbv12I	GWGCWC	2 cut(s)	63, 159
BbvI	GCAGC	4 cut(s)	235, 642, 659, 825
BccI	CCATC	1 cut(s)	559
BceAI	ACGGC	2 cut(s)	498, 853
BcgI	CGANNNNNNTGC	4 cut(s)	371, 405, 694, 728
BciT130I	CCWGG	3 cut(s)	30, 151, 162
BciVI	GTATCC	1 cut(s)	769
BcnI	CCSGG	2 cut(s)	245, 253
BfmI	CTRYAG	2 cut(s)	839, 860
BfoI	RGCGCY	1 cut(s)	503
BfrI	CTTAAG	1 cut(s)	433
BfuAI	ACCTGC	2 cut(s)	673, 867
BfuI	GTATCC	1 cut(s)	769
BglI	GCCNNNNNGGC	1 cut(s)	295
Bme1390I	CCNGG	5 cut(s)	30, 151, 162, 245, 253
Bme18I	GGWCC	1 cut(s)	211
BmeT110I	CYCGRG	3 cut(s)	352, 610, 667
BmgBI	CACGTC	2 cut(s)	403, 547
BmgT120I	GGNCC	2 cut(s)	211, 748
BmiI	GGNNCC	4 cut(s)	41, 212, 280, 648
BmrFI	CCNGG	5 cut(s)	30, 151, 162, 245, 253
BpiI	GAAGAC	1 cut(s)	371
BpuMI	CCSGG	2 cut(s)	245, 253
Bsa29I	ATCGAT	1 cut(s)	129
BsaAI	YACGTR	1 cut(s)	622
BsaJI	CCNNGG	7 cut(s)	28, 149, 150, 160, 206, 650, 783
BsaWI	WCCGGW	3 cut(s)	36, 213, 275
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 258
Bse118I	RCCGGY	1 cut(s)	586
Bse1I	ACTGG	2 cut(s)	91, 269
BseBI	CCWGG	3 cut(s)	30, 151, 162
BseCI	ATCGAT	1 cut(s)	129
BseDI	CCNNGG	7 cut(s)	28, 149, 150, 160, 206, 650, 783
BseLI	CCNNNNNNNGG	2 cut(s)	166, 258
BseNI	ACTGG	2 cut(s)	91, 269
BseRI	GAGGAG	1 cut(s)	372
BseSI	GKGCMC	1 cut(s)	575
BseXI	GCAGC	4 cut(s)	235, 642, 659, 825
BsgI	GTGCAG	2 cut(s)	641, 734
Bsh1236I	CGCG	2 cut(s)	607, 652
Bsh1285I	CGRYCG	3 cut(s)	51, 276, 294
BshFI	GGCC	3 cut(s)	238, 602, 749
BshNI	GGYRCC	1 cut(s)	646
BshVI	ATCGAT	1 cut(s)	129
BsiEI	CGRYCG	3 cut(s)	51, 276, 294
BsiHKAI	GWGCWC	2 cut(s)	63, 159
BsiHKCI	CYCGRG	3 cut(s)	352, 610, 667
BslFI	GGGAC	3 cut(s)	79, 224, 493
BslI	CCNNNNNNNGG	2 cut(s)	166, 258
BsmFI	GGGAC	3 cut(s)	79, 224, 493
BsnI	GGCC	3 cut(s)	238, 602, 749
BsoBI	CYCGRG	3 cut(s)	352, 610, 667
Bsp1286I	GDGCHC	4 cut(s)	63, 159, 575, 726
Bsp143I	GATC	4 cut(s)	102, 130, 291, 406
BspANI	GGCC	3 cut(s)	238, 602, 749
BspDI	ATCGAT	1 cut(s)	129
BspFNI	CGCG	2 cut(s)	607, 652
BspLI	GGNNCC	4 cut(s)	41, 212, 280, 648
BspMAI	CTGCAG	2 cut(s)	843, 864
BspMI	ACCTGC	2 cut(s)	673, 867
BspPI	GGATC	1 cut(s)	414
BspQI	GCTCTTC	1 cut(s)	51
BspT107I	GGYRCC	1 cut(s)	646
BspTI	CTTAAG	1 cut(s)	433
BsrBI	CCGCTC	2 cut(s)	258, 525
BsrFI	RCCGGY	1 cut(s)	586
BsrI	ACTGG	2 cut(s)	91, 269
BssAI	RCCGGY	1 cut(s)	586
BssECI	CCNNGG	7 cut(s)	28, 149, 150, 160, 206, 650, 783
BssMI	GATC	4 cut(s)	102, 130, 291, 406
BssSI	CACGAG	2 cut(s)	383, 703
Bst2BI	CACGAG	2 cut(s)	383, 703
Bst2UI	CCWGG	3 cut(s)	30, 151, 162
Bst4CI	ACNGT	3 cut(s)	21, 230, 784
Bst6I	CTCTTC	1 cut(s)	51
BstAFI	CTTAAG	1 cut(s)	433
BstBAI	YACGTR	1 cut(s)	622
BstC8I	GCNNGC	3 cut(s)	571, 588, 722
BstDSI	CCRYGG	2 cut(s)	650, 783
BstFNI	CGCG	2 cut(s)	607, 652
BstH2I	RGCGCY	1 cut(s)	503
BstHHI	GCGC	3 cut(s)	502, 609, 808
BstKTI	GATC	4 cut(s)	105, 133, 294, 409
BstMBI	GATC	4 cut(s)	102, 130, 291, 406
BstMCI	CGRYCG	3 cut(s)	51, 276, 294
BstNI	CCWGG	3 cut(s)	30, 151, 162
BstSCI	CCNGG	5 cut(s)	28, 149, 160, 243, 251
BstSFI	CTRYAG	2 cut(s)	839, 860
BstSLI	GKGCMC	1 cut(s)	575
BstUI	CGCG	2 cut(s)	607, 652
BstV1I	GCAGC	4 cut(s)	235, 642, 659, 825
BstV2I	GAAGAC	1 cut(s)	371
Bsu15I	ATCGAT	1 cut(s)	129
BsuI	GTATCC	1 cut(s)	769
BsuRI	GGCC	3 cut(s)	238, 602, 749
BsuTUI	ATCGAT	1 cut(s)	129
BtgI	CCRYGG	2 cut(s)	650, 783
BtgZI	GCGATG	1 cut(s)	103
BtrI	CACGTC	2 cut(s)	403, 547
BveI	ACCTGC	2 cut(s)	673, 867
Cac8I	GCNNGC	3 cut(s)	571, 588, 722
CfoI	GCGC	3 cut(s)	502, 609, 808
Cfr10I	RCCGGY	1 cut(s)	586
Cfr13I	GGNCC	2 cut(s)	211, 748
Cfr42I	CCGCGG	1 cut(s)	653
ClaI	ATCGAT	1 cut(s)	129
Csp6I	GTAC	5 cut(s)	175, 262, 619, 625, 856
CviAII	CATG	1 cut(s)	853
CviQI	GTAC	5 cut(s)	175, 262, 619, 625, 856
DpnI	GATC	4 cut(s)	104, 132, 293, 408
DpnII	GATC	4 cut(s)	102, 130, 291, 406
EaeI	YGGCCR	1 cut(s)	600
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
EciI	GGCGGA	1 cut(s)	500
Ecl136II	GAGCTC	2 cut(s)	61, 157
Eco24I	GRGCYC	3 cut(s)	63, 159, 726
Eco47I	GGWCC	1 cut(s)	211
Eco53kI	GAGCTC	2 cut(s)	61, 157
Eco88I	CYCGRG	3 cut(s)	352, 610, 667
EcoICRI	GAGCTC	2 cut(s)	61, 157
EcoO109I	RGGNCCY	1 cut(s)	748
EcoRI	GAATTC	1 cut(s)	536
EcoRII	CCWGG	3 cut(s)	28, 149, 160
EcoT38I	GRGCYC	3 cut(s)	63, 159, 726
FaeI	CATG	1 cut(s)	856
FaiI	YATR	4 cut(s)	380, 464, 466, 854
FaqI	GGGAC	3 cut(s)	79, 224, 493
FatI	CATG	1 cut(s)	852
FauI	CCCGC	2 cut(s)	251, 521
FriOI	GRGCYC	3 cut(s)	63, 159, 726
GlaI	GCGC	3 cut(s)	501, 608, 807
HaeII	RGCGCY	1 cut(s)	503
HaeIII	GGCC	3 cut(s)	238, 602, 749
HhaI	GCGC	3 cut(s)	502, 609, 808
Hin1II	CATG	1 cut(s)	856
Hin6I	GCGC	3 cut(s)	500, 607, 806
HinP1I	GCGC	3 cut(s)	500, 607, 806
HinfI	GANTC	6 cut(s)	508, 559, 641, 665, 798, 823
HphI	GGTGA	1 cut(s)	532
Hpy166II	GTNNAC	2 cut(s)	625, 702
Hpy188I	TCNGA	8 cut(s)	13, 303, 513, 535, 564, 640, 679, 828
Hpy188III	TCNNGA	2 cut(s)	313, 703
Hpy8I	GTNNAC	2 cut(s)	625, 702
Hpy99I	CGWCG	4 cut(s)	10, 13, 56, 404
HpyAV	CCTTC	5 cut(s)	178, 262, 508, 727, 739
HpyCH4III	ACNGT	3 cut(s)	21, 230, 784
HpyCH4IV	ACGT	3 cut(s)	402, 546, 621
HpyCH4V	TGCA	5 cut(s)	382, 658, 715, 841, 862
HpySE526I	ACGT	3 cut(s)	402, 546, 621
Hsp92II	CATG	1 cut(s)	856
HspAI	GCGC	3 cut(s)	500, 607, 806
KroI	GCCGGC	1 cut(s)	586
KroNI	GCCGGC	1 cut(s)	588
KspI	CCGCGG	1 cut(s)	653
Kzo9I	GATC	4 cut(s)	102, 130, 291, 406
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	5 cut(s)	154, 162, 255, 278, 679
Lsp1109I	GCAGC	4 cut(s)	235, 642, 659, 825
MaeII	ACGT	3 cut(s)	402, 546, 621
MaeIII	GTNAC	2 cut(s)	15, 21
MalI	GATC	4 cut(s)	104, 132, 293, 408
MbiI	CCGCTC	2 cut(s)	258, 525
MboI	GATC	4 cut(s)	102, 130, 291, 406
MboII	GAAGA	2 cut(s)	68, 376
MfeI	CAATTG	1 cut(s)	370
MhlI	GDGCHC	4 cut(s)	63, 159, 575, 726
MlsI	TGGCCA	1 cut(s)	602
MluCI	AATT	3 cut(s)	370, 536, 766
MluNI	TGGCCA	1 cut(s)	602
MlyI	GAGTC	2 cut(s)	517, 659
MmeI	TCCRAC	3 cut(s)	420, 491, 513
MnlI	CCTC	6 cut(s)	86, 201, 350, 426, 535, 703
Mox20I	TGGCCA	1 cut(s)	602
MreI	CGCCGGCG	1 cut(s)	586
MroNI	GCCGGC	1 cut(s)	586
MscI	TGGCCA	1 cut(s)	602
MseI	TTAA	2 cut(s)	318, 434
Msp20I	TGGCCA	1 cut(s)	602
MspA1I	CMGCKG	2 cut(s)	652, 838
MspCI	CTTAAG	1 cut(s)	433
MspR9I	CCNGG	5 cut(s)	30, 151, 162, 245, 253
MunI	CAATTG	1 cut(s)	370
MvaI	CCWGG	3 cut(s)	30, 151, 162
MvnI	CGCG	2 cut(s)	607, 652
NaeI	GCCGGC	1 cut(s)	588
NciI	CCSGG	2 cut(s)	245, 253
NdeII	GATC	4 cut(s)	102, 130, 291, 406
NgoMIV	GCCGGC	1 cut(s)	586
NlaIII	CATG	1 cut(s)	856
NlaIV	GGNNCC	4 cut(s)	41, 212, 280, 648
NmeAIII	GCCGAG	1 cut(s)	231
PaeR7I	CTCGAG	1 cut(s)	667
PaqCI	CACCTGC	1 cut(s)	673
PasI	CCCWGGG	1 cut(s)	150
PciSI	GCTCTTC	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	2 cut(s)	60, 126
PdiI	GCCGGC	1 cut(s)	588
PfeI	GAWTC	4 cut(s)	559, 641, 798, 823
Ple19I	CGATCG	1 cut(s)	294
PleI	GAGTC	2 cut(s)	516, 659
PpsI	GAGTC	2 cut(s)	516, 659
Ppu21I	YACGTR	1 cut(s)	622
Psp124BI	GAGCTC	2 cut(s)	63, 159
Psp6I	CCWGG	3 cut(s)	28, 149, 160
PspGI	CCWGG	3 cut(s)	28, 149, 160
PspN4I	GGNNCC	4 cut(s)	41, 212, 280, 648
PspPI	GGNCC	2 cut(s)	211, 748
PspXI	VCTCGAGB	1 cut(s)	667
PstI	CTGCAG	2 cut(s)	843, 864
PvuI	CGATCG	1 cut(s)	294
RsaI	GTAC	5 cut(s)	176, 263, 620, 626, 857
RsaNI	GTAC	5 cut(s)	175, 262, 619, 625, 856
SacI	GAGCTC	2 cut(s)	63, 159
SacII	CCGCGG	1 cut(s)	653
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	2 cut(s)	318, 434
Sau3AI	GATC	4 cut(s)	102, 130, 291, 406
Sau96I	GGNCC	2 cut(s)	211, 748
SchI	GAGTC	2 cut(s)	517, 659
ScrFI	CCNGG	5 cut(s)	30, 151, 162, 245, 253
SduI	GDGCHC	4 cut(s)	63, 159, 575, 726
SfcI	CTRYAG	2 cut(s)	839, 860
Sfr274I	CTCGAG	1 cut(s)	667
Sfr303I	CCGCGG	1 cut(s)	653
SgrAI	CRCCGGYG	1 cut(s)	586
SgrBI	CCGCGG	1 cut(s)	653
SinI	GGWCC	1 cut(s)	211
SlaI	CTCGAG	1 cut(s)	667
SmlI	CTYRAG	2 cut(s)	433, 667
SmoI	CTYRAG	2 cut(s)	433, 667
Sse9I	AATT	3 cut(s)	370, 536, 766
SstI	GAGCTC	2 cut(s)	63, 159
StyD4I	CCNGG	5 cut(s)	28, 149, 160, 243, 251
TaaI	ACNGT	3 cut(s)	21, 230, 784
TaiI	ACGT	3 cut(s)	405, 549, 624
TaqI	TCGA	4 cut(s)	129, 409, 540, 668
TaqII	GACCGA	1 cut(s)	65
TasI	AATT	3 cut(s)	370, 536, 766
TatI	WGTACW	1 cut(s)	624
TauI	GCSGC	7 cut(s)	462, 528, 586, 593, 652, 655, 838
TfiI	GAWTC	4 cut(s)	559, 641, 798, 823
Tru1I	TTAA	2 cut(s)	318, 434
Tru9I	TTAA	2 cut(s)	318, 434
TseI	GCWGC	4 cut(s)	248, 655, 672, 838
TspDTI	ATGAA	1 cut(s)	841
TspGWI	ACGGA	2 cut(s)	192, 677
Vha464I	CTTAAG	1 cut(s)	433
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	1 cut(s)	536
XhoI	CTCGAG	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.