Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007700.1

Orthogroup ID

OG0011814

Physical Location & Seq

Genomic Coordinates Forward (+)

916 .. 1317

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007700.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atgtcttcctcggagttacagttacccccaggcttccggttccaccccaccgacgaagagctcgtcaagcactacctctgccggaaatgccagtcccaaccgatctctgttcctatcatcgccgaaatcgatctgtacaaatacgacccctgggagctccctggtttggctctgtacggagagaaggagtggtatttcttttcgccgagggaccggaaataccctaacggttcgaggccgaaccgggctgccgggagcgggtactggaaggcgaccggagccgataagccgatcgggcttccgaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002831 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009611 GO:0009628 GO:0009787 GO:0009788 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009968 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0047484 GO:0048316 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1900150 GO:1901000 GO:1901002 GO:1901363 GO:1901419 GO:1901420 GO:1902584 GO:1902680 GO:1903506 GO:1903508 GO:1905623 GO:1905957 GO:1905958 GO:2000024 GO:2000026 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

102

Amino Acids

11.7

Weight (kDa)

8.55

Isoelectric Point (pI)

48.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01720 AT1G77450
fragaria_vesca	FvH4_2g27430
malus_domestica	MD00G1028600.v1.1 MD15G1344900.v1.1
prunus_persica	Prupe.1G493100_v2.0.a1
pyrus_communis	pycom15g30950
rosa_chinensis	RchiOBHm_Chr6g0296281
rosa_laevigata	RLG00000011710
rosa_multiflora	Rmu_sc0004708.1_g000008 Rmu_sc0007700.1_g000001
rosa_roxburghii	Rroxscaffold_7G00171670 Rroxscaffold_7G00178400
rosa_rugosa	Rorug06G0260600
rosa_samantha	Rh6AG372300 Rh6BG380300 Rh6CG385700 Rh6DG373000
rosa_wichuraiana	Rw6G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	258
AciI	CCGC	1 cut(s)	258
AfaI	GTAC	3 cut(s)	137, 176, 263
AfiI	CCNNNNNNNGG	2 cut(s)	166, 258
AjnI	CCWGG	3 cut(s)	28, 149, 160
AluBI	AGCT	2 cut(s)	61, 157
AluI	AGCT	2 cut(s)	61, 157
Alw21I	GWGCWC	2 cut(s)	63, 159
AoxI	GGCC	1 cut(s)	236
ApeKI	GCWGC	1 cut(s)	248
ArsI	GACNNNNNNTTYG	2 cut(s)	48, 80
AspS9I	GGNCC	1 cut(s)	211
AsuC2I	CCSGG	2 cut(s)	245, 253
AvaII	GGWCC	1 cut(s)	211
BanII	GRGCYC	2 cut(s)	63, 159
Bbv12I	GWGCWC	2 cut(s)	63, 159
BbvI	GCAGC	1 cut(s)	235
BciT130I	CCWGG	3 cut(s)	30, 151, 162
BcnI	CCSGG	2 cut(s)	245, 253
BglI	GCCNNNNNGGC	1 cut(s)	295
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
Bme1390I	CCNGG	5 cut(s)	30, 151, 162, 245, 253
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	3 cut(s)	41, 212, 280
BmrFI	CCNGG	5 cut(s)	30, 151, 162, 245, 253
BpuMI	CCSGG	2 cut(s)	245, 253
Bsa29I	ATCGAT	1 cut(s)	129
BsaJI	CCNNGG	6 cut(s)	9, 28, 149, 150, 160, 206
BsaWI	WCCGGW	3 cut(s)	36, 213, 275
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 258
Bse1I	ACTGG	2 cut(s)	91, 269
BseBI	CCWGG	3 cut(s)	30, 151, 162
BseCI	ATCGAT	1 cut(s)	129
BseDI	CCNNGG	6 cut(s)	9, 28, 149, 150, 160, 206
BseLI	CCNNNNNNNGG	2 cut(s)	166, 258
BseNI	ACTGG	2 cut(s)	91, 269
BseXI	GCAGC	1 cut(s)	235
Bsh1285I	CGRYCG	2 cut(s)	276, 294
BshFI	GGCC	1 cut(s)	238
BshVI	ATCGAT	1 cut(s)	129
BsiEI	CGRYCG	2 cut(s)	276, 294
BsiHKAI	GWGCWC	2 cut(s)	63, 159
BsiSI	CCGG	6 cut(s)	37, 82, 214, 244, 252, 276
BslFI	GGGAC	2 cut(s)	79, 224
BslI	CCNNNNNNNGG	2 cut(s)	166, 258
BsmFI	GGGAC	2 cut(s)	79, 224
BsnI	GGCC	1 cut(s)	238
Bsp1286I	GDGCHC	2 cut(s)	63, 159
Bsp1407I	TGTACA	1 cut(s)	135
Bsp143I	GATC	3 cut(s)	102, 130, 291
BspACI	CCGC	1 cut(s)	258
BspANI	GGCC	1 cut(s)	238
BspDI	ATCGAT	1 cut(s)	129
BspLI	GGNNCC	3 cut(s)	41, 212, 280
BspQI	GCTCTTC	1 cut(s)	51
BsrBI	CCGCTC	1 cut(s)	258
BsrGI	TGTACA	1 cut(s)	135
BsrI	ACTGG	2 cut(s)	91, 269
BssECI	CCNNGG	6 cut(s)	9, 28, 149, 150, 160, 206
BssMI	GATC	3 cut(s)	102, 130, 291
Bst2UI	CCWGG	3 cut(s)	30, 151, 162
Bst4CI	ACNGT	2 cut(s)	21, 230
Bst6I	CTCTTC	1 cut(s)	51
BstAUI	TGTACA	1 cut(s)	135
BstKTI	GATC	3 cut(s)	105, 133, 294
BstMBI	GATC	3 cut(s)	102, 130, 291
BstMCI	CGRYCG	2 cut(s)	276, 294
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 87, 278, 295
BstNI	CCWGG	3 cut(s)	30, 151, 162
BstSCI	CCNGG	5 cut(s)	28, 149, 160, 243, 251
BstV1I	GCAGC	1 cut(s)	235
Bsu15I	ATCGAT	1 cut(s)	129
BsuRI	GGCC	1 cut(s)	238
BsuTUI	ATCGAT	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	103
Cfr13I	GGNCC	1 cut(s)	211
ClaI	ATCGAT	1 cut(s)	129
Csp6I	GTAC	3 cut(s)	136, 175, 262
CviJI	RGCY	9 cut(s)	33, 61, 157, 170, 238, 248, 281, 289, 298
CviKI_1	RGCY	9 cut(s)	33, 61, 157, 170, 238, 248, 281, 289, 298
CviQI	GTAC	3 cut(s)	136, 175, 262
DpnI	GATC	3 cut(s)	104, 132, 293
DpnII	GATC	3 cut(s)	102, 130, 291
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Ecl136II	GAGCTC	2 cut(s)	61, 157
Eco24I	GRGCYC	2 cut(s)	63, 159
Eco47I	GGWCC	1 cut(s)	211
Eco53kI	GAGCTC	2 cut(s)	61, 157
EcoICRI	GAGCTC	2 cut(s)	61, 157
EcoRII	CCWGG	3 cut(s)	28, 149, 160
EcoT38I	GRGCYC	2 cut(s)	63, 159
FaqI	GGGAC	2 cut(s)	79, 224
FauI	CCCGC	1 cut(s)	251
Fnu4HI	GCNGC	1 cut(s)	249
FriOI	GRGCYC	2 cut(s)	63, 159
Fsp4HI	GCNGC	1 cut(s)	249
GluI	GCNGC	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	238
HapII	CCGG	6 cut(s)	37, 82, 214, 244, 252, 276
HpaII	CCGG	6 cut(s)	37, 82, 214, 244, 252, 276
Hpy188I	TCNGA	2 cut(s)	13, 303
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	2 cut(s)	178, 262
HpyCH4III	ACNGT	2 cut(s)	21, 230
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 87, 278, 295
Kzo9I	GATC	3 cut(s)	102, 130, 291
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	4 cut(s)	154, 162, 255, 278
Lsp1109I	GCAGC	1 cut(s)	235
MaeIII	GTNAC	2 cut(s)	15, 21
MalI	GATC	3 cut(s)	104, 132, 293
MbiI	CCGCTC	1 cut(s)	258
MboI	GATC	3 cut(s)	102, 130, 291
MboII	GAAGA	1 cut(s)	68
MhlI	GDGCHC	2 cut(s)	63, 159
MnlI	CCTC	4 cut(s)	19, 86, 201, 228
MspI	CCGG	6 cut(s)	37, 82, 214, 244, 252, 276
MspR9I	CCNGG	5 cut(s)	30, 151, 162, 245, 253
MvaI	CCWGG	3 cut(s)	30, 151, 162
MwoI	GCNNNNNNNGC	4 cut(s)	67, 87, 278, 295
NciI	CCSGG	2 cut(s)	245, 253
NdeII	GATC	3 cut(s)	102, 130, 291
NlaIV	GGNNCC	3 cut(s)	41, 212, 280
NmeAIII	GCCGAG	1 cut(s)	231
PasI	CCCWGGG	1 cut(s)	150
PciSI	GCTCTTC	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	2 cut(s)	60, 126
PkrI	GCNGC	1 cut(s)	250
Ple19I	CGATCG	1 cut(s)	294
Psp124BI	GAGCTC	2 cut(s)	63, 159
Psp6I	CCWGG	3 cut(s)	28, 149, 160
PspGI	CCWGG	3 cut(s)	28, 149, 160
PspN4I	GGNNCC	3 cut(s)	41, 212, 280
PspPI	GGNCC	1 cut(s)	211
PvuI	CGATCG	1 cut(s)	294
RsaI	GTAC	3 cut(s)	137, 176, 263
RsaNI	GTAC	3 cut(s)	136, 175, 262
SacI	GAGCTC	2 cut(s)	63, 159
SapI	GCTCTTC	1 cut(s)	51
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	3 cut(s)	102, 130, 291
Sau96I	GGNCC	1 cut(s)	211
ScrFI	CCNGG	5 cut(s)	30, 151, 162, 245, 253
SduI	GDGCHC	2 cut(s)	63, 159
SetI	ASST	3 cut(s)	63, 78, 159
SinI	GGWCC	1 cut(s)	211
SsiI	CCGC	1 cut(s)	258
SstI	GAGCTC	2 cut(s)	63, 159
StyD4I	CCNGG	5 cut(s)	28, 149, 160, 243, 251
TaaI	ACNGT	2 cut(s)	21, 230
TaqI	TCGA	2 cut(s)	129, 233
TatI	WGTACW	1 cut(s)	135
TseI	GCWGC	1 cut(s)	248
TspGWI	ACGGA	1 cut(s)	192
VpaK11BI	GGWCC	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.