MD15G1344900.v1.1
NAC Family

NAC domain-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
40411131 .. 40413060
1930 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1344900.v1.1.491

Sequence Viewer

Length: 891 bp
ATGTCGTCCGCCGATTTACAGCTTCCACCGGGGTTCAGGTTCCACCCGACGGACGAGGAGCTGGTGAGACACTACCTCTGCCGGAAATGCGCGTCGCAGCCGATATCAGTTCCGATCATTGCCGAAATCGATCTCTACAAATACGACCCCTGGGAGCTCCCAGGCTTGGCGTTGTACGGGGAAAAGGAGTGGTATTTCTTTTCGCCAAGGGATCGGAAGTACCCGAACGGTTCGAGGCCGAACCGGGCGGCCGGAAGCGGCTACTGGAAGGCGACCGGGGCCGATAAGCCGATTGGGCACCCGAAACCTGTGGGGATTAAGAAAGCTCTGGTGTTCTATGCTGGAAAAGCCCCTCGCGGCGAAAAGACCAACTGGATTATGCACGAATACCGCCTCGCCGACGTTGACCGCTCGCCGAGGAAGAAGAACAGCCTCAGGCTGGATGATTGGGTTCTGTGCCGAATATACAACAAGAAGGGGACCGTGGAGAACCAGCAGCCTCAGCAGCAGCAAGAACAACAGCGAACGACTAGTCGTAACGCGAGCAGTGGCTCGGAGTTCGAGGACAGGAAGCCGGATAATCTGAGGTGCCCGCCGCCGCCGGCTTCCGTGGTCCCCAGTCGTCACGTGAGCGATTACGTGTACTTCGACAACTCTGACTCGGTGCCGAAGCTGCACACGGACTCGAGCTGCTCGGAGCAGGTGGTGTCGCCGGAGTTGGCGTGCGAGGTGCAGAGCGAGCCCAAGTGGAAGGAGTGGGAGAAGGCGCTGGAAATGCCGTACAGTTACATGGATACGACGGTGGAGAACGGGTTCGGAGCGCAGTTCCAGAGCGGGAATGAGATGTCGCCGCTGCAGGATATCTTTATGTACCTGCAGAAGCCGTACTGA

Protein Analysis

297

Amino Acids

33.99

Weight (kDa)

7.0

Isoelectric Point (pI)

57.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 132 1.3e-49 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011814)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 691
Acc36I ACCTGC 2 cut(s) 691, 882
AccB1I GGYRCC 3 cut(s) 297, 588, 664
AccBSI CCGCTC 2 cut(s) 411, 834
AccII CGCG 3 cut(s) 92, 357, 542
AclWI GGATC 1 cut(s) 219
AcoI YGGCCR 1 cut(s) 249
AcvI CACGTG 1 cut(s) 628
AfaI GTAC 6 cut(s) 176, 221, 644, 782, 872, 887
AfiI CCNNNNNNNGG 3 cut(s) 49, 166, 439
AflIII ACRYGT 1 cut(s) 639
AhlI ACTAGT 1 cut(s) 530
AjnI CCWGG 2 cut(s) 149, 160
AloI GAACNNNNNNTCC 2 cut(s) 797, 829
AluBI AGCT 6 cut(s) 22, 61, 157, 326, 673, 690
AluI AGCT 6 cut(s) 22, 61, 157, 326, 673, 690
Alw21I GWGCWC 1 cut(s) 159
Alw26I GTCTC 1 cut(s) 61
AlwI GGATC 1 cut(s) 219
Ama87I CYCGRG 1 cut(s) 685
AoxI GGCC 3 cut(s) 236, 249, 279
ApeKI GCWGC 7 cut(s) 97, 496, 505, 508, 673, 690, 853
ArsI GACNNNNNNTTYG 2 cut(s) 517, 549
Asp700I GAANNNNTTC 1 cut(s) 812
AspLEI GCGC 3 cut(s) 92, 769, 823
AspS9I GGNCC 3 cut(s) 279, 480, 613
AsuC2I CCSGG 3 cut(s) 30, 245, 277
AsuHPI GGTGA 1 cut(s) 76
AvaI CYCGRG 1 cut(s) 685
AvaII GGWCC 2 cut(s) 480, 613
AxyI CCTNAGG 1 cut(s) 434
BaeGI GKGCMC 2 cut(s) 300, 593
BaeI ACNNNNGTAYC 2 cut(s) 786, 819
BanI GGYRCC 3 cut(s) 297, 588, 664
BanII GRGCYC 2 cut(s) 159, 744
BbrPI CACGTG 1 cut(s) 628
Bbv12I GWGCWC 1 cut(s) 159
BbvCI CCTCAGC 1 cut(s) 501
BbvI GCAGC 7 cut(s) 109, 508, 517, 520, 660, 677, 840
BceAI ACGGC 2 cut(s) 763, 868
BciT130I CCWGG 2 cut(s) 151, 162
BciVI GTATCC 1 cut(s) 787
BcnI CCSGG 3 cut(s) 30, 245, 277
BcoDI GTCTC 1 cut(s) 61
BcuI ACTAGT 1 cut(s) 530
BfaI CTAG 1 cut(s) 531
BfmI CTRYAG 2 cut(s) 854, 875
BfoI RGCGCY 1 cut(s) 770
BfuAI ACCTGC 2 cut(s) 691, 882
BfuI GTATCC 1 cut(s) 787
BglI GCCNNNNNGGC 1 cut(s) 295
Bme1390I CCNGG 5 cut(s) 30, 151, 162, 245, 277
Bme18I GGWCC 2 cut(s) 480, 613
BmeT110I CYCGRG 1 cut(s) 685
BmgT120I GGNCC 3 cut(s) 279, 480, 613
BmiI GGNNCC 7 cut(s) 41, 280, 299, 481, 590, 615, 666
BmrFI CCNGG 5 cut(s) 30, 151, 162, 245, 277
BmrI ACTGGG 1 cut(s) 612
BmuI ACTGGG 1 cut(s) 612
Bpu10I CCTNAGC 1 cut(s) 501
BpuMI CCSGG 3 cut(s) 30, 245, 277
Bsa29I ATCGAT 1 cut(s) 129
BsaAI YACGTR 2 cut(s) 628, 640
BsaJI CCNNGG 9 cut(s) 29, 149, 150, 160, 206, 276, 416, 483, 609
BsaXI ACNNNNNCTCC 4 cut(s) 707, 737, 797, 827
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 166, 439
Bse118I RCCGGY 1 cut(s) 601
Bse1I ACTGG 3 cut(s) 269, 377, 618
Bse21I CCTNAGG 1 cut(s) 434
Bse3DI GCAATG 1 cut(s) 117
BseBI CCWGG 2 cut(s) 151, 162
BseCI ATCGAT 1 cut(s) 129
BseDI CCNNGG 9 cut(s) 29, 149, 150, 160, 206, 276, 416, 483, 609
BseGI GGATG 1 cut(s) 448
BseLI CCNNNNNNNGG 3 cut(s) 49, 166, 439
BseMI GCAATG 1 cut(s) 117
BseMII CTCAG 3 cut(s) 448, 515, 575
BseNI ACTGG 3 cut(s) 269, 377, 618
BseRI GAGGAG 1 cut(s) 71
BseSI GKGCMC 2 cut(s) 300, 593
BseX3I CGGCCG 1 cut(s) 249
BseXI GCAGC 7 cut(s) 109, 508, 517, 520, 660, 677, 840
BsgI GTGCAG 2 cut(s) 659, 752
Bsh1236I CGCG 3 cut(s) 92, 357, 542
Bsh1285I CGRYCG 2 cut(s) 252, 276
BshFI GGCC 3 cut(s) 238, 251, 281
BshNI GGYRCC 3 cut(s) 297, 588, 664
BshVI ATCGAT 1 cut(s) 129
BsiEI CGRYCG 2 cut(s) 252, 276
BsiHKAI GWGCWC 1 cut(s) 159
BsiHKCI CYCGRG 1 cut(s) 685
BsiSI CCGG 8 cut(s) 29, 82, 244, 252, 276, 575, 602, 713
BslFI GGGAC 2 cut(s) 493, 599
BslI CCNNNNNNNGG 3 cut(s) 49, 166, 439
BsmAI GTCTC 1 cut(s) 61
BsmFI GGGAC 2 cut(s) 493, 599
BsnI GGCC 3 cut(s) 238, 251, 281
BsoBI CYCGRG 1 cut(s) 685
Bsp1286I GDGCHC 4 cut(s) 159, 300, 593, 744
Bsp143I GATC 3 cut(s) 114, 130, 211
BspANI GGCC 3 cut(s) 238, 251, 281
BspCNI CTCAG 3 cut(s) 447, 514, 576
BspDI ATCGAT 1 cut(s) 129
BspFNI CGCG 3 cut(s) 92, 357, 542
BspLI GGNNCC 7 cut(s) 41, 280, 299, 481, 590, 615, 666
BspMAI CTGCAG 2 cut(s) 858, 879
BspMI ACCTGC 2 cut(s) 691, 882
BspPI GGATC 1 cut(s) 219
BspT107I GGYRCC 3 cut(s) 297, 588, 664
BsrBI CCGCTC 2 cut(s) 411, 834
BsrDI GCAATG 1 cut(s) 117
BsrFI RCCGGY 1 cut(s) 601
BsrI ACTGG 3 cut(s) 269, 377, 618
BssAI RCCGGY 1 cut(s) 601
BssECI CCNNGG 9 cut(s) 29, 149, 150, 160, 206, 276, 416, 483, 609
BssMI GATC 3 cut(s) 114, 130, 211
BssT1I CCWWGG 1 cut(s) 206
Bst2UI CCWGG 2 cut(s) 151, 162
Bst4CI ACNGT 4 cut(s) 230, 484, 785, 802
BstBAI YACGTR 2 cut(s) 628, 640
BstC8I GCNNGC 6 cut(s) 413, 544, 593, 603, 724, 740
BstDEI CTNAG 3 cut(s) 434, 501, 584
BstDSI CCRYGG 2 cut(s) 483, 609
BstF5I GGATG 1 cut(s) 448
BstFNI CGCG 3 cut(s) 92, 357, 542
BstH2I RGCGCY 1 cut(s) 770
BstHHI GCGC 3 cut(s) 92, 769, 823
BstKTI GATC 3 cut(s) 117, 133, 214
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 3 cut(s) 114, 130, 211
BstMCI CGRYCG 2 cut(s) 252, 276
BstMWI GCNNNNNNNGC 9 cut(s) 87, 278, 295, 347, 502, 505, 673, 739, 775
BstNI CCWGG 2 cut(s) 151, 162
BstSCI CCNGG 5 cut(s) 28, 149, 160, 243, 275
BstSFI CTRYAG 2 cut(s) 854, 875
BstSLI GKGCMC 2 cut(s) 300, 593
BstUI CGCG 3 cut(s) 92, 357, 542
BstV1I GCAGC 7 cut(s) 109, 508, 517, 520, 660, 677, 840
BstZI CGGCCG 1 cut(s) 249
Bsu15I ATCGAT 1 cut(s) 129
Bsu36I CCTNAGG 1 cut(s) 434
BsuI GTATCC 1 cut(s) 787
BsuRI GGCC 3 cut(s) 238, 251, 281
BsuTUI ATCGAT 1 cut(s) 129
BtgI CCRYGG 2 cut(s) 483, 609
BtsCI GGATG 1 cut(s) 448
BtsI GCAGTG 1 cut(s) 553
BtsIMutI CAGTG 1 cut(s) 553
BveI ACCTGC 2 cut(s) 691, 882
Cac8I GCNNGC 6 cut(s) 413, 544, 593, 603, 724, 740
CfoI GCGC 3 cut(s) 92, 769, 823
Cfr10I RCCGGY 1 cut(s) 601
Cfr13I GGNCC 3 cut(s) 279, 480, 613
ClaI ATCGAT 1 cut(s) 129
CseI GACGC 1 cut(s) 81
Csp6I GTAC 6 cut(s) 175, 220, 643, 781, 871, 886
CviAII CATG 1 cut(s) 790
CviQI GTAC 6 cut(s) 175, 220, 643, 781, 871, 886
DdeI CTNAG 3 cut(s) 434, 501, 584
DpnI GATC 3 cut(s) 116, 132, 213
DpnII GATC 3 cut(s) 114, 130, 211
EaeI YGGCCR 1 cut(s) 249
EagI CGGCCG 1 cut(s) 249
Ecl136II GAGCTC 1 cut(s) 157
EclXI CGGCCG 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 206
Eco24I GRGCYC 2 cut(s) 159, 744
Eco32I GATATC 2 cut(s) 105, 862
Eco47I GGWCC 2 cut(s) 480, 613
Eco52I CGGCCG 1 cut(s) 249
Eco53kI GAGCTC 1 cut(s) 157
Eco72I CACGTG 1 cut(s) 628
Eco81I CCTNAGG 1 cut(s) 434
Eco88I CYCGRG 1 cut(s) 685
EcoICRI GAGCTC 1 cut(s) 157
EcoRII CCWGG 2 cut(s) 149, 160
EcoRV GATATC 2 cut(s) 105, 862
EcoT14I CCWWGG 1 cut(s) 206
EcoT38I GRGCYC 2 cut(s) 159, 744
ErhI CCWWGG 1 cut(s) 206
FaeI CATG 1 cut(s) 793
FaiI YATR 5 cut(s) 339, 380, 466, 791, 869
FaqI GGGAC 2 cut(s) 493, 599
FatI CATG 1 cut(s) 789
FauI CCCGC 2 cut(s) 600, 827
FokI GGATG 1 cut(s) 455
FriOI GRGCYC 2 cut(s) 159, 744
FspBI CTAG 1 cut(s) 531
GlaI GCGC 3 cut(s) 91, 768, 822
HaeII RGCGCY 1 cut(s) 770
HaeIII GGCC 3 cut(s) 238, 251, 281
HapII CCGG 8 cut(s) 29, 82, 244, 252, 276, 575, 602, 713
HgaI GACGC 1 cut(s) 81
HhaI GCGC 3 cut(s) 92, 769, 823
Hin1II CATG 1 cut(s) 793
Hin6I GCGC 3 cut(s) 90, 767, 821
HinP1I GCGC 3 cut(s) 90, 767, 821
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HinfI GANTC 2 cut(s) 659, 683
HpaII CCGG 8 cut(s) 29, 82, 244, 252, 276, 575, 602, 713
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 2 cut(s) 406, 643
Hpy188I TCNGA 7 cut(s) 114, 216, 556, 585, 658, 697, 818
Hpy188III TCNNGA 1 cut(s) 829
Hpy8I GTNNAC 2 cut(s) 406, 643
Hpy99I CGWCG 4 cut(s) 52, 97, 404, 802
HpyAV CCTTC 4 cut(s) 262, 469, 745, 757
HpyCH4III ACNGT 4 cut(s) 230, 484, 785, 802
HpyCH4IV ACGT 3 cut(s) 402, 627, 639
HpyCH4V TGCA 5 cut(s) 382, 676, 733, 856, 877
HpyF10VI GCNNNNNNNGC 9 cut(s) 87, 278, 295, 347, 502, 505, 673, 739, 775
HpyF3I CTNAG 3 cut(s) 434, 501, 584
HpySE526I ACGT 3 cut(s) 402, 627, 639
Hsp92II CATG 1 cut(s) 793
HspAI GCGC 3 cut(s) 90, 767, 821
KroI GCCGGC 1 cut(s) 601
KroNI GCCGGC 1 cut(s) 603
Kzo9I GATC 3 cut(s) 114, 130, 211
LmnI GCTCC 5 cut(s) 58, 154, 162, 697, 818
Lsp1109I GCAGC 7 cut(s) 109, 508, 517, 520, 660, 677, 840
MaeI CTAG 1 cut(s) 531
MaeII ACGT 3 cut(s) 402, 627, 639
MaeIII GTNAC 3 cut(s) 536, 623, 785
MalI GATC 3 cut(s) 116, 132, 213
MbiI CCGCTC 2 cut(s) 411, 834
MboI GATC 3 cut(s) 114, 130, 211
MboII GAAGA 2 cut(s) 433, 436
MhlI GDGCHC 4 cut(s) 159, 300, 593, 744
MlyI GAGTC 2 cut(s) 653, 677
MroNI GCCGGC 1 cut(s) 601
MroXI GAANNNNTTC 1 cut(s) 812
MseI TTAA 1 cut(s) 318
MspA1I CMGCKG 1 cut(s) 853
MspI CCGG 8 cut(s) 29, 82, 244, 252, 276, 575, 602, 713
MspR9I CCNGG 5 cut(s) 30, 151, 162, 245, 277
MvaI CCWGG 2 cut(s) 151, 162
MvnI CGCG 3 cut(s) 92, 357, 542
MwoI GCNNNNNNNGC 9 cut(s) 87, 278, 295, 347, 502, 505, 673, 739, 775
NaeI GCCGGC 1 cut(s) 603
NciI CCSGG 3 cut(s) 30, 245, 277
NdeII GATC 3 cut(s) 114, 130, 211
NgoMIV GCCGGC 1 cut(s) 601
NlaIII CATG 1 cut(s) 793
NlaIV GGNNCC 7 cut(s) 41, 280, 299, 481, 590, 615, 666
NmeAIII GCCGAG 1 cut(s) 441
NmuCI GTSAC 1 cut(s) 623
PaeR7I CTCGAG 1 cut(s) 685
PaqCI CACCTGC 1 cut(s) 691
PasI CCCWGGG 1 cut(s) 150
PcsI WCGNNNNNNNCGW 1 cut(s) 645
PdiI GCCGGC 1 cut(s) 603
PdmI GAANNNNTTC 1 cut(s) 812
PleI GAGTC 2 cut(s) 653, 677
PmaCI CACGTG 1 cut(s) 628
PmlI CACGTG 1 cut(s) 628
PpsI GAGTC 2 cut(s) 653, 677
Ppu21I YACGTR 2 cut(s) 628, 640
Psp124BI GAGCTC 1 cut(s) 159
Psp6I CCWGG 2 cut(s) 149, 160
PspCI CACGTG 1 cut(s) 628
PspGI CCWGG 2 cut(s) 149, 160
PspN4I GGNNCC 7 cut(s) 41, 280, 299, 481, 590, 615, 666
PspPI GGNCC 3 cut(s) 279, 480, 613
PspXI VCTCGAGB 1 cut(s) 685
PstI CTGCAG 2 cut(s) 858, 879
RsaI GTAC 6 cut(s) 176, 221, 644, 782, 872, 887
RsaNI GTAC 6 cut(s) 175, 220, 643, 781, 871, 886
SacI GAGCTC 1 cut(s) 159
SaqAI TTAA 1 cut(s) 318
Sau3AI GATC 3 cut(s) 114, 130, 211
Sau96I GGNCC 3 cut(s) 279, 480, 613
SchI GAGTC 2 cut(s) 653, 677
ScrFI CCNGG 5 cut(s) 30, 151, 162, 245, 277
SduI GDGCHC 4 cut(s) 159, 300, 593, 744
SfcI CTRYAG 2 cut(s) 854, 875
Sfr274I CTCGAG 1 cut(s) 685
SinI GGWCC 2 cut(s) 480, 613
SlaI CTCGAG 1 cut(s) 685
SmlI CTYRAG 1 cut(s) 685
SmoI CTYRAG 1 cut(s) 685
SpeI ACTAGT 1 cut(s) 530
SspMI CTAG 1 cut(s) 531
SstI GAGCTC 1 cut(s) 159
StyD4I CCNGG 5 cut(s) 28, 149, 160, 243, 275
StyI CCWWGG 1 cut(s) 206
TaaI ACNGT 4 cut(s) 230, 484, 785, 802
TaiI ACGT 3 cut(s) 405, 630, 642
TaqI TCGA 5 cut(s) 129, 233, 561, 648, 686
TatI WGTACW 1 cut(s) 642
TauI GCSGC 6 cut(s) 251, 261, 360, 598, 601, 853
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 1 cut(s) 553
TseFI GTSAC 1 cut(s) 623
TseI GCWGC 7 cut(s) 97, 496, 505, 508, 673, 690, 853
Tsp45I GTSAC 1 cut(s) 623
TspGWI ACGGA 3 cut(s) 65, 598, 695
TspRI CASTG 1 cut(s) 553
VpaK11BI GGWCC 2 cut(s) 480, 613
XhoI CTCGAG 1 cut(s) 685
XmnI GAANNNNTTC 1 cut(s) 812
XspI CTAG 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.