Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011814

Physical Location & Seq

Genomic Coordinates Forward (+)

29099839 .. 29101759

Gene Structure 1921 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G77450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGATGAAATCTGGGGCTGATTTGCAATTTCCACCAGGATTTAGATTTCATCCTACGGATGAGGAGCTAGTCCTCATGTATCTCTGTCGTAAATGCGCGTCGCAGCCGATCCCTGCTCCGATTATCACCGAACTCGATTTGTACCGATATGATCCTTGGGACCTTCCCGACATGGCTTTGTACGGTGAAAAGGAGTGGTATTTTTTCTCACCAAGAGATCGAAAGTATCCAAACGGTTCAAGACCCAACCGTGCAGCTGGTACTGGATATTGGAAAGCTACCGGAGCTGATAAACCAATAGGTCGTCCTAAACCGGTTGGTATTAAGAAGGCTCTAGTGTTTTACTCGGGAAAACCTCCAAATGGAGAGAAAACCAATTGGATTATGCACGAATACCGGCTCGCTGACGTTGACCGGTCGGTTCGTAAGAAAAACAGTCTAAGATTGGACGATTGGGTATTGTGTCGTATATATAACAAGAAAGGTGTCATCGAGAAGCGACGAAGCGATATCGAGGACGGGTTAAAGCCTGTGACTGACACGTGTCCACCGGAATCTGTGGCGAGATTGATCTCCGGCTCGGAGCAAGCGGTGTCACCGGAATTCACGTGTAGCAACGGTCGGTTGAGTAATGCCCTTGATTTTCCGTTTAATTACGTAGATGCCATCGCCGATAACGAGATTGTGTCACGGCTATTGGGCGGGAATCAGATGTGGTCGACGACGCTTGATCCACTTGTGGTTAGGCAGGGAACTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002831 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009611 GO:0009628 GO:0009787 GO:0009788 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009968 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0047484 GO:0048316 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1900150 GO:1901000 GO:1901002 GO:1901363 GO:1901419 GO:1901420 GO:1902584 GO:1902680 GO:1903506 GO:1903508 GO:1905623 GO:1905957 GO:1905958 GO:2000024 GO:2000026 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

253

Amino Acids

28.74

Weight (kDa)

8.7

Isoelectric Point (pI)

36.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	11 - 134	3.9e-49	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01720 AT1G77450
fragaria_vesca	FvH4_2g27430
malus_domestica	MD00G1028600.v1.1 MD15G1344900.v1.1
prunus_persica	Prupe.1G493100_v2.0.a1
pyrus_communis	pycom15g30950
rosa_chinensis	RchiOBHm_Chr6g0296281
rosa_laevigata	RLG00000011710
rosa_multiflora	Rmu_sc0004708.1_g000008 Rmu_sc0007700.1_g000001
rosa_roxburghii	Rroxscaffold_7G00171670 Rroxscaffold_7G00178400
rosa_rugosa	Rorug06G0260600
rosa_samantha	Rh6AG372300 Rh6BG380300 Rh6CG385700 Rh6DG373000
rosa_wichuraiana	Rw6G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	719
AccII	CGCG	1 cut(s)	98
AciI	CCGC	2 cut(s)	590, 702
AclWI	GGATC	3 cut(s)	103, 146, 725
AcsI	RAATTY	1 cut(s)	602
AcvI	CACGTG	2 cut(s)	543, 609
AfaI	GTAC	3 cut(s)	143, 182, 262
AfiI	CCNNNNNNNGG	1 cut(s)	362
AflIII	ACRYGT	3 cut(s)	540, 542, 608
AgeI	ACCGGT	2 cut(s)	313, 414
AgsI	TTSAA	1 cut(s)	240
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	4 cut(s)	67, 257, 278, 287
AluI	AGCT	4 cut(s)	67, 257, 278, 287
AlwI	GGATC	3 cut(s)	103, 146, 725
Ama87I	CYCGRG	1 cut(s)	346
ApeKI	GCWGC	2 cut(s)	103, 254
ApoI	RAATTY	1 cut(s)	602
AsiGI	ACCGGT	2 cut(s)	313, 414
AspLEI	GCGC	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	4 cut(s)	118, 197, 201, 588
AvaI	CYCGRG	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	160
BbrPI	CACGTG	2 cut(s)	543, 609
BbvI	GCAGC	2 cut(s)	115, 266
BccI	CCATC	1 cut(s)	674
BceAI	ACGGC	1 cut(s)	707
BciT130I	CCWGG	1 cut(s)	36
BciVI	GTATCC	1 cut(s)	237
BfaI	CTAG	2 cut(s)	68, 335
BfuI	GTATCC	1 cut(s)	237
BisI	GCNGC	2 cut(s)	104, 255
BlsI	GCNGC	2 cut(s)	105, 256
Bme1390I	CCNGG	1 cut(s)	36
Bme18I	GGWCC	1 cut(s)	160
BmeT110I	CYCGRG	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	36
BmsI	GCATC	1 cut(s)	652
BoxI	GACNNNNGTC	1 cut(s)	543
BsaAI	YACGTR	3 cut(s)	543, 609, 658
BsaJI	CCNNGG	1 cut(s)	155
BsaWI	WCCGGW	5 cut(s)	281, 313, 414, 550, 598
Bsc4I	CCNNNNNNNGG	1 cut(s)	362
Bse118I	RCCGGY	3 cut(s)	313, 396, 414
Bse1I	ACTGG	1 cut(s)	268
BseBI	CCWGG	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	155
BseGI	GGATG	2 cut(s)	49, 64
BseLI	CCNNNNNNNGG	1 cut(s)	362
BseNI	ACTGG	1 cut(s)	268
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	2 cut(s)	115, 266
BsgI	GTGCAG	1 cut(s)	273
Bsh1236I	CGCG	1 cut(s)	98
Bsh1285I	CGRYCG	2 cut(s)	419, 622
BshTI	ACCGGT	2 cut(s)	313, 414
BsiEI	CGRYCG	2 cut(s)	419, 622
BsiHKCI	CYCGRG	1 cut(s)	346
BsiSI	CCGG	7 cut(s)	282, 314, 397, 415, 551, 576, 599
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	1 cut(s)	362
BsmFI	GGGAC	1 cut(s)	173
BsoBI	CYCGRG	1 cut(s)	346
Bsp143I	GATC	5 cut(s)	108, 151, 217, 570, 730
BspACI	CCGC	2 cut(s)	590, 702
BspFNI	CGCG	1 cut(s)	98
BspLI	GGNNCC	1 cut(s)	161
BspPI	GGATC	3 cut(s)	103, 146, 725
BsrFI	RCCGGY	3 cut(s)	313, 396, 414
BsrI	ACTGG	1 cut(s)	268
BssAI	RCCGGY	3 cut(s)	313, 396, 414
BssECI	CCNNGG	1 cut(s)	155
BssMI	GATC	5 cut(s)	108, 151, 217, 570, 730
BssT1I	CCWWGG	1 cut(s)	155
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	5 cut(s)	185, 236, 251, 437, 620
BstBAI	YACGTR	3 cut(s)	543, 609, 658
BstC8I	GCNNGC	2 cut(s)	402, 588
BstDEI	CTNAG	1 cut(s)	440
BstF5I	GGATG	2 cut(s)	49, 64
BstFNI	CGCG	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	5 cut(s)	111, 154, 220, 573, 733
BstMBI	GATC	5 cut(s)	108, 151, 217, 570, 730
BstMCI	CGRYCG	2 cut(s)	419, 622
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstNI	CCWGG	1 cut(s)	36
BstPAI	GACNNNNGTC	1 cut(s)	543
BstSCI	CCNGG	1 cut(s)	34
BstSNI	TACGTA	1 cut(s)	658
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	2 cut(s)	115, 266
BsuI	GTATCC	1 cut(s)	237
BtgZI	GCGATG	1 cut(s)	652
BtsCI	GGATG	2 cut(s)	49, 64
Cac8I	GCNNGC	2 cut(s)	402, 588
CfoI	GCGC	1 cut(s)	98
Cfr10I	RCCGGY	3 cut(s)	313, 396, 414
Cfr13I	GGNCC	1 cut(s)	160
CseI	GACGC	2 cut(s)	87, 733
Csp6I	GTAC	3 cut(s)	142, 181, 261
CspAI	ACCGGT	2 cut(s)	313, 414
CviAII	CATG	2 cut(s)	76, 172
CviQI	GTAC	3 cut(s)	142, 181, 261
DdeI	CTNAG	1 cut(s)	440
DpnI	GATC	5 cut(s)	110, 153, 219, 572, 732
DpnII	GATC	5 cut(s)	108, 151, 217, 570, 730
Eco105I	TACGTA	1 cut(s)	658
Eco130I	CCWWGG	1 cut(s)	155
Eco32I	GATATC	1 cut(s)	511
Eco47I	GGWCC	1 cut(s)	160
Eco72I	CACGTG	2 cut(s)	543, 609
Eco88I	CYCGRG	1 cut(s)	346
EcoO109I	RGGNCCY	1 cut(s)	160
EcoRI	GAATTC	1 cut(s)	602
EcoRII	CCWGG	1 cut(s)	34
EcoRV	GATATC	1 cut(s)	511
EcoT14I	CCWWGG	1 cut(s)	155
ErhI	CCWWGG	1 cut(s)	155
FaeI	CATG	2 cut(s)	79, 175
FaiI	YATR	7 cut(s)	77, 150, 173, 386, 470, 472, 474
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	2 cut(s)	75, 171
FauI	CCCGC	1 cut(s)	695
FblI	GTMKAC	1 cut(s)	719
Fnu4HI	GCNGC	2 cut(s)	104, 255
FokI	GGATG	2 cut(s)	36, 71
Fsp4HI	GCNGC	2 cut(s)	104, 255
FspBI	CTAG	2 cut(s)	68, 335
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	2 cut(s)	104, 255
HapII	CCGG	7 cut(s)	282, 314, 397, 415, 551, 576, 599
HgaI	GACGC	2 cut(s)	87, 733
HhaI	GCGC	1 cut(s)	98
Hin1II	CATG	2 cut(s)	79, 175
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HincII	GTYRAC	2 cut(s)	412, 720
HindII	GTYRAC	2 cut(s)	412, 720
HinfI	GANTC	2 cut(s)	554, 706
HpaII	CCGG	7 cut(s)	282, 314, 397, 415, 551, 576, 599
HphI	GGTGA	4 cut(s)	118, 197, 201, 588
Hpy166II	GTNNAC	3 cut(s)	412, 548, 720
Hpy188I	TCNGA	4 cut(s)	120, 583, 711, 761
Hpy188III	TCNNGA	4 cut(s)	167, 240, 348, 493
Hpy8I	GTNNAC	3 cut(s)	412, 548, 720
Hpy99I	CGWCG	4 cut(s)	103, 504, 724, 727
HpyAV	CCTTC	2 cut(s)	173, 322
HpyCH4III	ACNGT	5 cut(s)	185, 236, 251, 437, 620
HpyCH4IV	ACGT	4 cut(s)	408, 542, 608, 657
HpyCH4V	TGCA	3 cut(s)	25, 254, 388
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	1 cut(s)	440
HpySE526I	ACGT	4 cut(s)	408, 542, 608, 657
Hsp92II	CATG	2 cut(s)	79, 175
HspAI	GCGC	1 cut(s)	96
Kzo9I	GATC	5 cut(s)	108, 151, 217, 570, 730
LmnI	GCTCC	4 cut(s)	64, 121, 284, 583
Lsp1109I	GCAGC	2 cut(s)	115, 266
LweI	GCATC	1 cut(s)	652
MaeI	CTAG	2 cut(s)	68, 335
MaeII	ACGT	4 cut(s)	408, 542, 608, 657
MaeIII	GTNAC	3 cut(s)	532, 594, 687
MalI	GATC	5 cut(s)	110, 153, 219, 572, 732
MboI	GATC	5 cut(s)	108, 151, 217, 570, 730
MfeI	CAATTG	1 cut(s)	376
MluCI	AATT	4 cut(s)	26, 376, 602, 652
MnlI	CCTC	4 cut(s)	55, 83, 366, 508
MseI	TTAA	3 cut(s)	324, 524, 651
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	7 cut(s)	282, 314, 397, 415, 551, 576, 599
MspR9I	CCNGG	1 cut(s)	36
MunI	CAATTG	1 cut(s)	376
MvaI	CCWGG	1 cut(s)	36
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	1 cut(s)	284
NdeII	GATC	5 cut(s)	108, 151, 217, 570, 730
NlaIII	CATG	2 cut(s)	79, 175
NlaIV	GGNNCC	1 cut(s)	161
NmuCI	GTSAC	3 cut(s)	532, 594, 687
PcsI	WCGNNNNNNNCGW	1 cut(s)	675
PfeI	GAWTC	2 cut(s)	554, 706
PinAI	ACCGGT	2 cut(s)	313, 414
PkrI	GCNGC	2 cut(s)	105, 256
PmaCI	CACGTG	2 cut(s)	543, 609
PmlI	CACGTG	2 cut(s)	543, 609
Ppu21I	YACGTR	3 cut(s)	543, 609, 658
PpuMI	RGGWCCY	1 cut(s)	160
PshAI	GACNNNNGTC	1 cut(s)	543
Psp5II	RGGWCCY	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	34
PspCI	CACGTG	2 cut(s)	543, 609
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	161
PspPI	GGNCC	1 cut(s)	160
PspPPI	RGGWCCY	1 cut(s)	160
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	3 cut(s)	143, 182, 262
RsaNI	GTAC	3 cut(s)	142, 181, 261
SalI	GTCGAC	1 cut(s)	718
SaqAI	TTAA	3 cut(s)	324, 524, 651
SatI	GCNGC	2 cut(s)	104, 255
Sau3AI	GATC	5 cut(s)	108, 151, 217, 570, 730
Sau96I	GGNCC	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	36
SfaNI	GCATC	1 cut(s)	652
SinI	GGWCC	1 cut(s)	160
SnaBI	TACGTA	1 cut(s)	658
Sse9I	AATT	4 cut(s)	26, 376, 602, 652
SsiI	CCGC	2 cut(s)	590, 702
SspMI	CTAG	2 cut(s)	68, 335
StyD4I	CCNGG	1 cut(s)	34
StyI	CCWWGG	1 cut(s)	155
TaaI	ACNGT	5 cut(s)	185, 236, 251, 437, 620
TaiI	ACGT	4 cut(s)	411, 545, 611, 660
TaqI	TCGA	5 cut(s)	135, 220, 492, 513, 719
TasI	AATT	4 cut(s)	26, 376, 602, 652
TfiI	GAWTC	2 cut(s)	554, 706
Tru1I	TTAA	3 cut(s)	324, 524, 651
Tru9I	TTAA	3 cut(s)	324, 524, 651
TseFI	GTSAC	3 cut(s)	532, 594, 687
TseI	GCWGC	2 cut(s)	103, 254
Tsp45I	GTSAC	3 cut(s)	532, 594, 687
TspDTI	ATGAA	2 cut(s)	20, 38
TspGWI	ACGGA	2 cut(s)	71, 636
VpaK11BI	GGWCC	1 cut(s)	160
XapI	RAATTY	1 cut(s)	602
XmiI	GTMKAC	1 cut(s)	719
XspI	CTAG	2 cut(s)	68, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.