Rw6G032460
NAC Family

NAC domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
56620117 .. 56621550
1434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G032460.1

Sequence Viewer

Length: 834 bp
ATGTCTTCCTCGGAGTTACAGTTACCCCCAGGCTTCCGGTTCCACCCAACCGACGAAGAGCTCGTCAAGCACTACCTCTGCCGGAAATGCCAGTCCCAACCGATCTCTGTTCCTATCATCGCCGAAATCGATCTGTACAAATACGACCCCTGGGAGCTCCCTGGTTTGGCTCTGTACGGAGAGAAGGAGTGGTATTTCTTTTCGCCGAGGGACCGGAAATACCCGAACGGTTCGAGGCCGAACCGGGCTGCCGGGAGCGGGTACTGGAAGGCGACCGGAGCCGATAAGCCGATCGGGCTTCCGAAGCCGGTCGGGATTAAAAAGGCTTTGGTATTCTACGCCGGAAAAGCTCCGAGAGGAGAGAAGACCAATTGGATTATGCATGAGTATCGCCTCGCCGACGTGGATCGAACGCCTCGCAAGAGAAACAGCTTAAGGTTGGACGATTGGGTTCTGTGCCGCATATACAACAAAAAGGGGACGGCGGAGAAGCAACAGCCGCCGATGAGTCGGAAGCCGGAGAATCTGATGGCGTGCCCACCACCGCCGGCGGTGCCGGCCACGCGCCCGAGTGAGTACGTGTACTTTGACAACTCGGATTCGGTGCCCCGGCTGCACACGGACTCGAGCTGCTCGGAGCAGGTGGTGTCGCCGGAGTTCACGAGCGAGGTGCAGAGCGAGCCCAAGTGGAAGGAGTGGGAGAAGGCCCTCGATTTTCCTTACAATTACGGGGATGCCACCATGGAAAACGGGGGGTTCGGGGCGCAGTTTCAGGGTGGGAATCAGATGTCGCCGCTGCAGGATATGTTCATGTACCTGCAGAAGCCCTATTGA

Protein Analysis

277

Amino Acids

31.76

Weight (kDa)

8.43

Isoelectric Point (pI)

56.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 132 6.4e-50 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011814)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 631
Acc36I ACCTGC 2 cut(s) 631, 825
AccB1I GGYRCC 2 cut(s) 553, 604
AccBSI CCGCTC 1 cut(s) 258
AccII CGCG 1 cut(s) 565
AciI CCGC 7 cut(s) 258, 460, 485, 500, 545, 551, 794
AclWI GGATC 1 cut(s) 414
AcoI YGGCCR 1 cut(s) 558
AfaI GTAC 6 cut(s) 137, 176, 263, 578, 584, 815
AfiI CCNNNNNNNGG 2 cut(s) 166, 258
AflII CTTAAG 1 cut(s) 433
AflIII ACRYGT 1 cut(s) 579
AjiI CACGTC 1 cut(s) 403
AjnI CCWGG 3 cut(s) 28, 149, 160
AluBI AGCT 5 cut(s) 61, 157, 350, 432, 630
AluI AGCT 5 cut(s) 61, 157, 350, 432, 630
Alw21I GWGCWC 2 cut(s) 63, 159
AlwI GGATC 1 cut(s) 414
Ama87I CYCGRG 2 cut(s) 568, 625
AoxI GGCC 3 cut(s) 236, 558, 705
ApeKI GCWGC 4 cut(s) 248, 613, 630, 796
ArsI GACNNNNNNTTYG 2 cut(s) 48, 80
AspLEI GCGC 2 cut(s) 567, 766
AspS9I GGNCC 2 cut(s) 211, 706
AsuC2I CCSGG 3 cut(s) 245, 253, 610
AvaI CYCGRG 2 cut(s) 568, 625
AvaII GGWCC 1 cut(s) 211
BaeGI GKGCMC 2 cut(s) 539, 609
BanI GGYRCC 2 cut(s) 553, 604
BanII GRGCYC 3 cut(s) 63, 159, 684
BauI CACGAG 1 cut(s) 661
BbsI GAAGAC 1 cut(s) 371
Bbv12I GWGCWC 2 cut(s) 63, 159
BbvI GCAGC 4 cut(s) 235, 600, 617, 783
BccI CCATC 1 cut(s) 523
BceAI ACGGC 1 cut(s) 498
BcgI CGANNNNNNTGC 4 cut(s) 371, 405, 652, 686
BciT130I CCWGG 3 cut(s) 30, 151, 162
BcnI CCSGG 3 cut(s) 245, 253, 610
BfmI CTRYAG 2 cut(s) 797, 818
BfrI CTTAAG 1 cut(s) 433
BfuAI ACCTGC 2 cut(s) 631, 825
BglI GCCNNNNNGGC 1 cut(s) 295
BisI GCNGC 7 cut(s) 249, 460, 500, 614, 631, 794, 797
BlsI GCNGC 7 cut(s) 250, 461, 501, 615, 632, 795, 798
Bme1390I CCNGG 6 cut(s) 30, 151, 162, 245, 253, 610
Bme18I GGWCC 1 cut(s) 211
BmeT110I CYCGRG 2 cut(s) 568, 625
BmgBI CACGTC 1 cut(s) 403
BmgT120I GGNCC 2 cut(s) 211, 706
BmiI GGNNCC 5 cut(s) 41, 212, 280, 555, 606
BmrFI CCNGG 6 cut(s) 30, 151, 162, 245, 253, 610
BmsI GCATC 1 cut(s) 724
BpiI GAAGAC 1 cut(s) 371
BpuMI CCSGG 3 cut(s) 245, 253, 610
Bsa29I ATCGAT 1 cut(s) 129
BsaAI YACGTR 1 cut(s) 580
BsaJI CCNNGG 8 cut(s) 9, 28, 149, 150, 160, 206, 608, 741
BsaWI WCCGGW 3 cut(s) 36, 213, 275
BsaXI ACNNNNNCTCC 2 cut(s) 5, 35
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 258
Bse118I RCCGGY 3 cut(s) 307, 547, 556
Bse1I ACTGG 2 cut(s) 91, 269
BseBI CCWGG 3 cut(s) 30, 151, 162
BseCI ATCGAT 1 cut(s) 129
BseDI CCNNGG 8 cut(s) 9, 28, 149, 150, 160, 206, 608, 741
BseGI GGATG 1 cut(s) 739
BseLI CCNNNNNNNGG 2 cut(s) 166, 258
BseNI ACTGG 2 cut(s) 91, 269
BseRI GAGGAG 1 cut(s) 372
BseSI GKGCMC 2 cut(s) 539, 609
BseXI GCAGC 4 cut(s) 235, 600, 617, 783
BsgI GTGCAG 2 cut(s) 599, 692
Bsh1236I CGCG 1 cut(s) 565
Bsh1285I CGRYCG 3 cut(s) 276, 294, 312
BshFI GGCC 3 cut(s) 238, 560, 707
BshNI GGYRCC 2 cut(s) 553, 604
BshVI ATCGAT 1 cut(s) 129
BsiEI CGRYCG 3 cut(s) 276, 294, 312
BsiHKAI GWGCWC 2 cut(s) 63, 159
BsiHKCI CYCGRG 2 cut(s) 568, 625
BslFI GGGAC 3 cut(s) 79, 224, 493
BslI CCNNNNNNNGG 2 cut(s) 166, 258
BsmFI GGGAC 3 cut(s) 79, 224, 493
BsnI GGCC 3 cut(s) 238, 560, 707
BsoBI CYCGRG 2 cut(s) 568, 625
Bsp1286I GDGCHC 5 cut(s) 63, 159, 539, 609, 684
Bsp1407I TGTACA 1 cut(s) 135
Bsp143I GATC 4 cut(s) 102, 130, 291, 406
Bsp19I CCATGG 1 cut(s) 741
BspACI CCGC 7 cut(s) 258, 460, 485, 500, 545, 551, 794
BspANI GGCC 3 cut(s) 238, 560, 707
BspDI ATCGAT 1 cut(s) 129
BspFNI CGCG 1 cut(s) 565
BspLI GGNNCC 5 cut(s) 41, 212, 280, 555, 606
BspMAI CTGCAG 2 cut(s) 801, 822
BspMI ACCTGC 2 cut(s) 631, 825
BspPI GGATC 1 cut(s) 414
BspQI GCTCTTC 1 cut(s) 51
BspT107I GGYRCC 2 cut(s) 553, 604
BspTI CTTAAG 1 cut(s) 433
BsrBI CCGCTC 1 cut(s) 258
BsrFI RCCGGY 3 cut(s) 307, 547, 556
BsrGI TGTACA 1 cut(s) 135
BsrI ACTGG 2 cut(s) 91, 269
BssAI RCCGGY 3 cut(s) 307, 547, 556
BssECI CCNNGG 8 cut(s) 9, 28, 149, 150, 160, 206, 608, 741
BssMI GATC 4 cut(s) 102, 130, 291, 406
BssSI CACGAG 1 cut(s) 661
BssT1I CCWWGG 1 cut(s) 741
Bst2BI CACGAG 1 cut(s) 661
Bst2UI CCWGG 3 cut(s) 30, 151, 162
Bst4CI ACNGT 2 cut(s) 21, 230
Bst6I CTCTTC 1 cut(s) 51
BstAFI CTTAAG 1 cut(s) 433
BstAUI TGTACA 1 cut(s) 135
BstBAI YACGTR 1 cut(s) 580
BstC8I GCNNGC 4 cut(s) 535, 549, 558, 680
BstDSI CCRYGG 1 cut(s) 741
BstF5I GGATG 1 cut(s) 739
BstFNI CGCG 1 cut(s) 565
BstHHI GCGC 2 cut(s) 567, 766
BstKTI GATC 4 cut(s) 105, 133, 294, 409
BstMBI GATC 4 cut(s) 102, 130, 291, 406
BstMCI CGRYCG 3 cut(s) 276, 294, 312
BstNI CCWGG 3 cut(s) 30, 151, 162
BstSCI CCNGG 6 cut(s) 28, 149, 160, 243, 251, 608
BstSFI CTRYAG 2 cut(s) 797, 818
BstSLI GKGCMC 2 cut(s) 539, 609
BstUI CGCG 1 cut(s) 565
BstV1I GCAGC 4 cut(s) 235, 600, 617, 783
BstV2I GAAGAC 1 cut(s) 371
Bsu15I ATCGAT 1 cut(s) 129
BsuRI GGCC 3 cut(s) 238, 560, 707
BsuTUI ATCGAT 1 cut(s) 129
BtgI CCRYGG 1 cut(s) 741
BtgZI GCGATG 1 cut(s) 103
BtrI CACGTC 1 cut(s) 403
BtsCI GGATG 1 cut(s) 739
BveI ACCTGC 2 cut(s) 631, 825
Cac8I GCNNGC 4 cut(s) 535, 549, 558, 680
CfoI GCGC 2 cut(s) 567, 766
Cfr10I RCCGGY 3 cut(s) 307, 547, 556
Cfr13I GGNCC 2 cut(s) 211, 706
ClaI ATCGAT 1 cut(s) 129
Csp6I GTAC 6 cut(s) 136, 175, 262, 577, 583, 814
CviAII CATG 3 cut(s) 383, 742, 811
CviQI GTAC 6 cut(s) 136, 175, 262, 577, 583, 814
DpnI GATC 4 cut(s) 104, 132, 293, 408
DpnII GATC 4 cut(s) 102, 130, 291, 406
EaeI YGGCCR 1 cut(s) 558
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
EciI GGCGGA 1 cut(s) 500
Ecl136II GAGCTC 2 cut(s) 61, 157
Eco130I CCWWGG 1 cut(s) 741
Eco24I GRGCYC 3 cut(s) 63, 159, 684
Eco47I GGWCC 1 cut(s) 211
Eco53kI GAGCTC 2 cut(s) 61, 157
Eco88I CYCGRG 2 cut(s) 568, 625
EcoICRI GAGCTC 2 cut(s) 61, 157
EcoO109I RGGNCCY 1 cut(s) 706
EcoRII CCWGG 3 cut(s) 28, 149, 160
EcoT14I CCWWGG 1 cut(s) 741
EcoT22I ATGCAT 1 cut(s) 384
EcoT38I GRGCYC 3 cut(s) 63, 159, 684
ErhI CCWWGG 1 cut(s) 741
FaeI CATG 3 cut(s) 386, 745, 814
FaiI YATR 7 cut(s) 380, 384, 464, 466, 743, 806, 812
FaqI GGGAC 3 cut(s) 79, 224, 493
FatI CATG 3 cut(s) 382, 741, 810
FauI CCCGC 1 cut(s) 251
Fnu4HI GCNGC 7 cut(s) 249, 460, 500, 614, 631, 794, 797
FokI GGATG 1 cut(s) 746
FriOI GRGCYC 3 cut(s) 63, 159, 684
Fsp4HI GCNGC 7 cut(s) 249, 460, 500, 614, 631, 794, 797
GlaI GCGC 2 cut(s) 566, 765
GluI GCNGC 7 cut(s) 249, 460, 500, 614, 631, 794, 797
HaeIII GGCC 3 cut(s) 238, 560, 707
HhaI GCGC 2 cut(s) 567, 766
Hin1II CATG 3 cut(s) 386, 745, 814
Hin6I GCGC 2 cut(s) 565, 764
HinP1I GCGC 2 cut(s) 565, 764
HinfI GANTC 5 cut(s) 508, 523, 599, 623, 781
Hpy166II GTNNAC 2 cut(s) 583, 660
Hpy188I TCNGA 8 cut(s) 13, 303, 354, 513, 528, 598, 637, 786
Hpy188III TCNNGA 2 cut(s) 313, 661
Hpy8I GTNNAC 2 cut(s) 583, 660
Hpy99I CGWCG 2 cut(s) 56, 404
HpyAV CCTTC 4 cut(s) 178, 262, 685, 697
HpyCH4III ACNGT 2 cut(s) 21, 230
HpyCH4IV ACGT 2 cut(s) 402, 579
HpyCH4V TGCA 5 cut(s) 382, 616, 673, 799, 820
HpySE526I ACGT 2 cut(s) 402, 579
Hsp92II CATG 3 cut(s) 386, 745, 814
HspAI GCGC 2 cut(s) 565, 764
KroI GCCGGC 2 cut(s) 547, 556
KroNI GCCGGC 2 cut(s) 549, 558
Kzo9I GATC 4 cut(s) 102, 130, 291, 406
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 6 cut(s) 154, 162, 255, 278, 355, 637
Lsp1109I GCAGC 4 cut(s) 235, 600, 617, 783
LweI GCATC 1 cut(s) 724
MaeII ACGT 2 cut(s) 402, 579
MaeIII GTNAC 2 cut(s) 15, 21
MalI GATC 4 cut(s) 104, 132, 293, 408
MbiI CCGCTC 1 cut(s) 258
MboI GATC 4 cut(s) 102, 130, 291, 406
MboII GAAGA 2 cut(s) 68, 376
MfeI CAATTG 1 cut(s) 370
MhlI GDGCHC 5 cut(s) 63, 159, 539, 609, 684
MluCI AATT 2 cut(s) 370, 724
MlyI GAGTC 2 cut(s) 517, 617
MmeI TCCRAC 2 cut(s) 420, 491
MnlI CCTC 9 cut(s) 19, 86, 201, 228, 350, 404, 426, 661, 719
Mph1103I ATGCAT 1 cut(s) 384
MreI CGCCGGCG 1 cut(s) 547
MroNI GCCGGC 2 cut(s) 547, 556
MseI TTAA 2 cut(s) 318, 434
MspA1I CMGCKG 1 cut(s) 796
MspCI CTTAAG 1 cut(s) 433
MspR9I CCNGG 6 cut(s) 30, 151, 162, 245, 253, 610
MunI CAATTG 1 cut(s) 370
MvaI CCWGG 3 cut(s) 30, 151, 162
MvnI CGCG 1 cut(s) 565
NaeI GCCGGC 2 cut(s) 549, 558
NciI CCSGG 3 cut(s) 245, 253, 610
NcoI CCATGG 1 cut(s) 741
NdeII GATC 4 cut(s) 102, 130, 291, 406
NgoMIV GCCGGC 2 cut(s) 547, 556
NlaIII CATG 3 cut(s) 386, 745, 814
NlaIV GGNNCC 5 cut(s) 41, 212, 280, 555, 606
NmeAIII GCCGAG 1 cut(s) 231
NsiI ATGCAT 1 cut(s) 384
PaeR7I CTCGAG 1 cut(s) 625
PaqCI CACCTGC 1 cut(s) 631
PasI CCCWGGG 1 cut(s) 150
PciSI GCTCTTC 1 cut(s) 51
PcsI WCGNNNNNNNCGW 2 cut(s) 60, 126
PdiI GCCGGC 2 cut(s) 549, 558
PfeI GAWTC 3 cut(s) 523, 599, 781
PkrI GCNGC 7 cut(s) 250, 461, 501, 615, 632, 795, 798
Ple19I CGATCG 1 cut(s) 294
PleI GAGTC 2 cut(s) 516, 617
PpsI GAGTC 2 cut(s) 516, 617
Ppu21I YACGTR 1 cut(s) 580
Psp124BI GAGCTC 2 cut(s) 63, 159
Psp6I CCWGG 3 cut(s) 28, 149, 160
PspGI CCWGG 3 cut(s) 28, 149, 160
PspN4I GGNNCC 5 cut(s) 41, 212, 280, 555, 606
PspPI GGNCC 2 cut(s) 211, 706
PspXI VCTCGAGB 1 cut(s) 625
PstI CTGCAG 2 cut(s) 801, 822
PvuI CGATCG 1 cut(s) 294
RsaI GTAC 6 cut(s) 137, 176, 263, 578, 584, 815
RsaNI GTAC 6 cut(s) 136, 175, 262, 577, 583, 814
SacI GAGCTC 2 cut(s) 63, 159
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 2 cut(s) 318, 434
SatI GCNGC 7 cut(s) 249, 460, 500, 614, 631, 794, 797
Sau3AI GATC 4 cut(s) 102, 130, 291, 406
Sau96I GGNCC 2 cut(s) 211, 706
SchI GAGTC 2 cut(s) 517, 617
ScrFI CCNGG 6 cut(s) 30, 151, 162, 245, 253, 610
SduI GDGCHC 5 cut(s) 63, 159, 539, 609, 684
SfaNI GCATC 1 cut(s) 724
SfcI CTRYAG 2 cut(s) 797, 818
Sfr274I CTCGAG 1 cut(s) 625
SgrAI CRCCGGYG 1 cut(s) 547
SinI GGWCC 1 cut(s) 211
SlaI CTCGAG 1 cut(s) 625
SmlI CTYRAG 2 cut(s) 433, 625
SmoI CTYRAG 2 cut(s) 433, 625
Sse9I AATT 2 cut(s) 370, 724
SsiI CCGC 7 cut(s) 258, 460, 485, 500, 545, 551, 794
SstI GAGCTC 2 cut(s) 63, 159
StyD4I CCNGG 6 cut(s) 28, 149, 160, 243, 251, 608
StyI CCWWGG 1 cut(s) 741
TaaI ACNGT 2 cut(s) 21, 230
TaiI ACGT 2 cut(s) 405, 582
TaqI TCGA 5 cut(s) 129, 233, 409, 626, 711
TasI AATT 2 cut(s) 370, 724
TatI WGTACW 2 cut(s) 135, 582
TauI GCSGC 3 cut(s) 462, 502, 796
TfiI GAWTC 3 cut(s) 523, 599, 781
Tru1I TTAA 2 cut(s) 318, 434
Tru9I TTAA 2 cut(s) 318, 434
TseI GCWGC 4 cut(s) 248, 613, 630, 796
TspDTI ATGAA 1 cut(s) 799
TspGWI ACGGA 2 cut(s) 192, 635
Vha464I CTTAAG 1 cut(s) 433
VpaK11BI GGWCC 1 cut(s) 211
XhoI CTCGAG 1 cut(s) 625
Zsp2I ATGCAT 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.