Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007800

Physical Location & Seq

Genomic Coordinates Reverse (-)

489874 .. 490627

Gene Structure 754 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G02405.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTCGCCTAAAACTCGCCGATCGACGGATCTTGCGGCCACAATCCTCATGGCTATCGTGATCCTCGCATCTCCGATCATAATCAACGCCGAAGATTCTTCAGCCGAAGTTGACGTTAACTGCATACCTTGTCTCCAAAATCAACCGCCTCCGCCTCCGTCTCCGCCACCTCCTTCTTGTACACCCTCCCCTCCTCCTCCGTCACCACCACCCCCGAAGAAATCTTCCTGTCCACCATCGCCTCTGCCGCCACCGCCACCTCCACCTCCACCTAATTACGTATTCACATATCCGCCGGGAGACTTGTACCCTATTGAAAATTACTATGGAGCGGCTGTGGCAGTAGAAAGCTTTTCGGTGATGAAGCTGTTCGTGTTTGGAGTTATGGTTTTTCTGATTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

14.2

Weight (kDa)

4.77

Isoelectric Point (pI)

109.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02405 AT1G23040 AT1G23040 AT1G23040 AT1G70990
fragaria_vesca	FvH4_4g32400
malus_domestica	MD13G1025500.v1.1
prunus_persica	Prupe.1G324400_v2.0.a1
pyrus_communis	pycom13g02420
rosa_chinensis	RchiOBHm_Chr4g0441241 RchiOBHm_Chr4g0441251
rosa_laevigata	RLG00000006107 RLG00000006108
rosa_multiflora	Rmu_sc0012909.1_g000011
rosa_roxburghii	Rroxscaffold_5G00382150
rosa_rugosa	Rorug04G0331800
rosa_samantha	Rh4AG383600 Rh4AG383700 Rh4BG397700 Rh4CG412900 Rh4DG390400 Rh4DG390500
rosa_wichuraiana	Rw4G033100 Rw4G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	332
AciI	CCGC	8 cut(s)	35, 146, 152, 164, 248, 254, 293, 332
AclWI	GGATC	2 cut(s)	36, 55
AcoI	YGGCCR	1 cut(s)	36
AcuI	CTGAAG	1 cut(s)	84
AfaI	GTAC	2 cut(s)	181, 308
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	1 cut(s)	317
AluBI	AGCT	2 cut(s)	351, 367
AluI	AGCT	2 cut(s)	351, 367
Alw26I	GTCTC	3 cut(s)	137, 165, 294
AlwI	GGATC	2 cut(s)	36, 55
AoxI	GGCC	1 cut(s)	36
Asp700I	GAANNNNTTC	1 cut(s)	368
AsuC2I	CCSGG	1 cut(s)	297
AsuHPI	GGTGA	2 cut(s)	195, 370
BccI	CCATC	1 cut(s)	244
BcnI	CCSGG	1 cut(s)	297
BcoDI	GTCTC	3 cut(s)	137, 165, 294
BisI	GCNGC	3 cut(s)	36, 248, 333
BlsI	GCNGC	3 cut(s)	37, 249, 334
Bme1390I	CCNGG	1 cut(s)	297
BmrFI	CCNGG	1 cut(s)	297
BmsI	GCATC	1 cut(s)	77
BpuMI	CCSGG	1 cut(s)	297
BsaAI	YACGTR	1 cut(s)	280
BsaBI	GATNNNNATC	1 cut(s)	80
BsaXI	ACNNNNNCTCC	6 cut(s)	117, 147, 321, 351, 372, 402
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse8I	GATNNNNATC	1 cut(s)	80
BseJI	GATNNNNATC	1 cut(s)	80
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseRI	GAGGAG	2 cut(s)	183, 186
Bsh1285I	CGRYCG	1 cut(s)	23
BshFI	GGCC	1 cut(s)	38
BsiEI	CGRYCG	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	296
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmAI	GTCTC	3 cut(s)	137, 165, 294
BsmBI	CGTCTC	1 cut(s)	165
BsnI	GGCC	1 cut(s)	38
Bsp1407I	TGTACA	1 cut(s)	179
Bsp143I	GATC	4 cut(s)	20, 28, 60, 75
BspACI	CCGC	8 cut(s)	35, 146, 152, 164, 248, 254, 293, 332
BspANI	GGCC	1 cut(s)	38
BspPI	GGATC	2 cut(s)	36, 55
BsrBI	CCGCTC	1 cut(s)	332
BsrGI	TGTACA	1 cut(s)	179
BssMI	GATC	4 cut(s)	20, 28, 60, 75
BstAUI	TGTACA	1 cut(s)	179
BstBAI	YACGTR	1 cut(s)	280
BstKTI	GATC	4 cut(s)	23, 31, 63, 78
BstMAI	GTCTC	3 cut(s)	137, 165, 294
BstMBI	GATC	4 cut(s)	20, 28, 60, 75
BstMCI	CGRYCG	1 cut(s)	23
BstMWI	GCNNNNNNNGC	3 cut(s)	247, 253, 338
BstSCI	CCNGG	1 cut(s)	295
BstSNI	TACGTA	1 cut(s)	280
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	38
BtgZI	GCGATG	1 cut(s)	222
Csp6I	GTAC	2 cut(s)	180, 307
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	6 cut(s)	38, 53, 104, 335, 351, 367
CviKI_1	RGCY	6 cut(s)	38, 53, 104, 335, 351, 367
CviQI	GTAC	2 cut(s)	180, 307
DpnI	GATC	4 cut(s)	22, 30, 62, 77
DpnII	GATC	4 cut(s)	20, 28, 60, 75
EaeI	YGGCCR	1 cut(s)	36
EciI	GGCGGA	3 cut(s)	141, 153, 282
Eco105I	TACGTA	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	84
Esp3I	CGTCTC	1 cut(s)	165
FaeI	CATG	1 cut(s)	52
FaiI	YATR	6 cut(s)	50, 80, 125, 289, 327, 386
FatI	CATG	1 cut(s)	48
Fnu4HI	GCNGC	3 cut(s)	36, 248, 333
Fsp4HI	GCNGC	3 cut(s)	36, 248, 333
GluI	GCNGC	3 cut(s)	36, 248, 333
HaeIII	GGCC	1 cut(s)	38
HapII	CCGG	1 cut(s)	296
Hin1II	CATG	1 cut(s)	52
HincII	GTYRAC	2 cut(s)	112, 118
HindII	GTYRAC	2 cut(s)	112, 118
HindIII	AAGCTT	1 cut(s)	349
HinfI	GANTC	2 cut(s)	95, 397
HpaI	GTTAAC	1 cut(s)	118
HpaII	CCGG	1 cut(s)	296
HphI	GGTGA	2 cut(s)	195, 370
Hpy166II	GTNNAC	4 cut(s)	112, 118, 182, 233
Hpy188I	TCNGA	2 cut(s)	75, 396
Hpy188III	TCNNGA	1 cut(s)	58
Hpy8I	GTNNAC	4 cut(s)	112, 118, 182, 233
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	1 cut(s)	183
HpyCH4IV	ACGT	2 cut(s)	114, 279
HpyCH4V	TGCA	1 cut(s)	123
HpyF10VI	GCNNNNNNNGC	3 cut(s)	247, 253, 338
HpySE526I	ACGT	2 cut(s)	114, 279
Hsp92II	CATG	1 cut(s)	52
KspAI	GTTAAC	1 cut(s)	118
Kzo9I	GATC	4 cut(s)	20, 28, 60, 75
LmnI	GCTCC	1 cut(s)	329
LpnPI	CCDG	2 cut(s)	241, 309
LweI	GCATC	1 cut(s)	77
MaeII	ACGT	2 cut(s)	114, 279
MaeIII	GTNAC	1 cut(s)	201
MalI	GATC	4 cut(s)	22, 30, 62, 77
MbiI	CCGCTC	1 cut(s)	332
MboI	GATC	4 cut(s)	20, 28, 60, 75
MboII	GAAGA	4 cut(s)	90, 104, 216, 229
MflI	RGATCY	1 cut(s)	28
MluCI	AATT	2 cut(s)	274, 319
MroXI	GAANNNNTTC	1 cut(s)	368
MseI	TTAA	1 cut(s)	117
MspI	CCGG	1 cut(s)	296
MspR9I	CCNGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	3 cut(s)	247, 253, 338
NciI	CCSGG	1 cut(s)	297
NdeII	GATC	4 cut(s)	20, 28, 60, 75
NlaIII	CATG	1 cut(s)	52
NmuCI	GTSAC	1 cut(s)	201
PdmI	GAANNNNTTC	1 cut(s)	368
PfeI	GAWTC	2 cut(s)	95, 397
PkrI	GCNGC	3 cut(s)	37, 249, 334
Ple19I	CGATCG	1 cut(s)	23
Ppu21I	YACGTR	1 cut(s)	280
PsuI	RGATCY	1 cut(s)	28
PvuI	CGATCG	1 cut(s)	23
RsaI	GTAC	2 cut(s)	181, 308
RsaNI	GTAC	2 cut(s)	180, 307
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	3 cut(s)	36, 248, 333
Sau3AI	GATC	4 cut(s)	20, 28, 60, 75
ScrFI	CCNGG	1 cut(s)	297
SetI	ASST	9 cut(s)	117, 130, 172, 262, 268, 274, 282, 353, 369
SfaNI	GCATC	1 cut(s)	77
SnaBI	TACGTA	1 cut(s)	280
Sse9I	AATT	2 cut(s)	274, 319
SsiI	CCGC	8 cut(s)	35, 146, 152, 164, 248, 254, 293, 332
StyD4I	CCNGG	1 cut(s)	295
TaiI	ACGT	2 cut(s)	117, 282
TaqI	TCGA	1 cut(s)	23
TasI	AATT	2 cut(s)	274, 319
TatI	WGTACW	1 cut(s)	179
TauI	GCSGC	3 cut(s)	38, 250, 335
TfiI	GAWTC	2 cut(s)	95, 397
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	201
Tsp45I	GTSAC	1 cut(s)	201
TspDTI	ATGAA	1 cut(s)	377
TspGWI	ACGGA	3 cut(s)	41, 147, 189
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XmnI	GAANNNNTTC	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.