RLG00000006108

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0007800
Physical Location & Seq
Reverse (-)
4415318 .. 4415731
414 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006108

Sequence Viewer

Length: 414 bp
ATGACGCACTGCTTCAAGTTTCTCAGCTTGTTCCTTGTTGCTGTGGCCCTTTCAGGAGGAGGAGCTTCGGTTCACGCCCAAGACGGCAGTGAGAAGTGCGGTTCATGCGCTACACCCAGCCCCCCGCCGCCGTCTCCTCCGCCGCCATCACCGTGTCCACCTCCACCGGTGCTTCCACCACCAACACCGGTTCTTCCCCCTCCTTCCCCCAAGAATCCTCCACCGTCCACTTCGTACTGCCCTCCTCCGCCGTCGTCGTTGATTTACATCACTGGTCCTCCCGGGCAGCTGTACCCTGTTGATCAGGACTTTAACGGTGCTCATGGAGTGAGGAGCTCGGTCGGCTTACCAATTATGCTCGGACTCGGATTGCTGGTGTTCTGGCGTTTTGGTGAGCAGGCCGGACTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

14.05

Weight (kDa)

6.23

Isoelectric Point (pI)

76.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 99, 125, 128, 140, 143, 248
AfaI GTAC 2 cut(s) 236, 293
AgeI ACCGGT 2 cut(s) 166, 187
AgsI TTSAA 1 cut(s) 16
AloI GAACNNNNNNTCC 2 cut(s) 54, 86
AluBI AGCT 4 cut(s) 27, 65, 289, 336
AluI AGCT 4 cut(s) 27, 65, 289, 336
Alw21I GWGCWC 2 cut(s) 322, 338
Alw26I GTCTC 1 cut(s) 138
Ama87I CYCGRG 1 cut(s) 281
AoxI GGCC 2 cut(s) 45, 399
ApeKI GCWGC 1 cut(s) 286
AsiGI ACCGGT 2 cut(s) 166, 187
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 2 cut(s) 46, 275
AsuC2I CCSGG 2 cut(s) 282, 283
AsuHPI GGTGA 2 cut(s) 141, 404
AvaI CYCGRG 1 cut(s) 281
AvaII GGWCC 1 cut(s) 275
BanII GRGCYC 1 cut(s) 338
Bbv12I GWGCWC 2 cut(s) 322, 338
BbvI GCAGC 1 cut(s) 298
BccI CCATC 1 cut(s) 154
BceAI ACGGC 3 cut(s) 100, 115, 235
BclI TGATCA 1 cut(s) 301
BcnI CCSGG 2 cut(s) 282, 283
BcoDI GTCTC 1 cut(s) 138
BisI GCNGC 3 cut(s) 128, 143, 287
BlsI GCNGC 3 cut(s) 129, 144, 288
Bme1390I CCNGG 2 cut(s) 282, 283
Bme18I GGWCC 1 cut(s) 275
BmeT110I CYCGRG 1 cut(s) 281
BmgT120I GGNCC 2 cut(s) 46, 275
BmrFI CCNGG 2 cut(s) 282, 283
BpuMI CCSGG 2 cut(s) 282, 283
BsaBI GATNNNNATC 1 cut(s) 266
BsaJI CCNNGG 1 cut(s) 281
BsaWI WCCGGW 2 cut(s) 166, 187
BsaXI ACNNNNNCTCC 4 cut(s) 54, 84, 262, 292
Bse118I RCCGGY 2 cut(s) 166, 187
Bse1I ACTGG 1 cut(s) 277
Bse8I GATNNNNATC 1 cut(s) 266
BseDI CCNNGG 1 cut(s) 281
BseJI GATNNNNATC 1 cut(s) 266
BseMII CTCAG 1 cut(s) 37
BseNI ACTGG 1 cut(s) 277
BseRI GAGGAG 5 cut(s) 72, 75, 126, 234, 346
BseXI GCAGC 1 cut(s) 298
BseYI CCCAGC 1 cut(s) 116
Bsh1285I CGRYCG 1 cut(s) 342
BshFI GGCC 2 cut(s) 47, 401
BshTI ACCGGT 2 cut(s) 166, 187
BsiEI CGRYCG 1 cut(s) 342
BsiHKAI GWGCWC 2 cut(s) 322, 338
BsiHKCI CYCGRG 1 cut(s) 281
BsiSI CCGG 4 cut(s) 167, 188, 282, 402
BsmAI GTCTC 1 cut(s) 138
BsmBI CGTCTC 1 cut(s) 138
BsnI GGCC 2 cut(s) 47, 401
BsoBI CYCGRG 1 cut(s) 281
Bsp1286I GDGCHC 2 cut(s) 322, 338
Bsp143I GATC 1 cut(s) 301
BspACI CCGC 6 cut(s) 99, 125, 128, 140, 143, 248
BspANI GGCC 2 cut(s) 47, 401
BspCNI CTCAG 1 cut(s) 36
BsrFI RCCGGY 2 cut(s) 166, 187
BsrI ACTGG 1 cut(s) 277
BssAI RCCGGY 2 cut(s) 166, 187
BssECI CCNNGG 1 cut(s) 281
BssMI GATC 1 cut(s) 301
Bst4CI ACNGT 3 cut(s) 153, 225, 317
BstC8I GCNNGC 1 cut(s) 399
BstDEI CTNAG 1 cut(s) 23
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 1 cut(s) 304
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 1 cut(s) 301
BstMCI CGRYCG 1 cut(s) 342
BstMWI GCNNNNNNNGC 2 cut(s) 105, 342
BstSCI CCNGG 2 cut(s) 280, 281
BstV1I GCAGC 1 cut(s) 298
BsuRI GGCC 2 cut(s) 47, 401
BtsI GCAGTG 2 cut(s) 7, 94
BtsIMutI CAGTG 3 cut(s) 7, 94, 270
Cac8I GCNNGC 1 cut(s) 399
CfoI GCGC 1 cut(s) 110
Cfr10I RCCGGY 2 cut(s) 166, 187
Cfr13I GGNCC 2 cut(s) 46, 275
Cfr9I CCCGGG 1 cut(s) 281
CseI GACGC 1 cut(s) 13
Csp6I GTAC 2 cut(s) 235, 292
CspAI ACCGGT 2 cut(s) 166, 187
CviAII CATG 2 cut(s) 105, 323
CviJI RGCY 8 cut(s) 27, 47, 65, 120, 289, 336, 345, 401
CviKI_1 RGCY 8 cut(s) 27, 47, 65, 120, 289, 336, 345, 401
CviQI GTAC 2 cut(s) 235, 292
DdeI CTNAG 1 cut(s) 23
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
EciI GGCGGA 2 cut(s) 129, 237
Ecl136II GAGCTC 1 cut(s) 336
Eco24I GRGCYC 1 cut(s) 338
Eco47I GGWCC 1 cut(s) 275
Eco53kI GAGCTC 1 cut(s) 336
Eco88I CYCGRG 1 cut(s) 281
EcoICRI GAGCTC 1 cut(s) 336
EcoT38I GRGCYC 1 cut(s) 338
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 2 cut(s) 108, 326
FaiI YATR 3 cut(s) 106, 324, 356
FatI CATG 2 cut(s) 104, 322
FauI CCCGC 1 cut(s) 132
FbaI TGATCA 1 cut(s) 301
Fnu4HI GCNGC 3 cut(s) 128, 143, 287
FriOI GRGCYC 1 cut(s) 338
Fsp4HI GCNGC 3 cut(s) 128, 143, 287
GlaI GCGC 1 cut(s) 109
GluI GCNGC 3 cut(s) 128, 143, 287
GsaI CCCAGC 1 cut(s) 120
HaeIII GGCC 2 cut(s) 47, 401
HapII CCGG 4 cut(s) 167, 188, 282, 402
HgaI GACGC 1 cut(s) 13
HhaI GCGC 1 cut(s) 110
Hin1II CATG 2 cut(s) 108, 326
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HinfI GANTC 2 cut(s) 214, 363
HpaII CCGG 4 cut(s) 167, 188, 282, 402
HphI GGTGA 2 cut(s) 141, 404
Hpy166II GTNNAC 3 cut(s) 73, 158, 228
Hpy188I TCNGA 2 cut(s) 362, 368
Hpy188III TCNNGA 2 cut(s) 54, 305
Hpy8I GTNNAC 3 cut(s) 73, 158, 228
Hpy99I CGWCG 2 cut(s) 256, 259
HpyAV CCTTC 1 cut(s) 213
HpyCH4III ACNGT 3 cut(s) 153, 225, 317
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 342
HpyF3I CTNAG 1 cut(s) 23
Hsp92II CATG 2 cut(s) 108, 326
HspAI GCGC 1 cut(s) 108
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 1 cut(s) 301
LmnI GCTCC 2 cut(s) 62, 333
Lsp1109I GCAGC 1 cut(s) 298
MalI GATC 1 cut(s) 303
MboI GATC 1 cut(s) 301
MboII GAAGA 1 cut(s) 185
MhlI GDGCHC 2 cut(s) 322, 338
MluCI AATT 1 cut(s) 351
MlyI GAGTC 1 cut(s) 357
MseI TTAA 2 cut(s) 312, 412
MslI CAYNNNNRTG 1 cut(s) 151
MspA1I CMGCKG 1 cut(s) 289
MspI CCGG 4 cut(s) 167, 188, 282, 402
MspR9I CCNGG 2 cut(s) 282, 283
MwoI GCNNNNNNNGC 2 cut(s) 105, 342
NciI CCSGG 2 cut(s) 282, 283
NdeII GATC 1 cut(s) 301
NlaIII CATG 2 cut(s) 108, 326
PfeI GAWTC 1 cut(s) 214
PinAI ACCGGT 2 cut(s) 166, 187
PkrI GCNGC 3 cut(s) 129, 144, 288
PleI GAGTC 1 cut(s) 357
PpsI GAGTC 1 cut(s) 357
Psp124BI GAGCTC 1 cut(s) 338
PspFI CCCAGC 1 cut(s) 116
PspPI GGNCC 2 cut(s) 46, 275
PvuII CAGCTG 1 cut(s) 289
RsaI GTAC 2 cut(s) 236, 293
RsaNI GTAC 2 cut(s) 235, 292
RseI CAYNNNNRTG 1 cut(s) 151
SacI GAGCTC 1 cut(s) 338
SaqAI TTAA 2 cut(s) 312, 412
SatI GCNGC 3 cut(s) 128, 143, 287
Sau3AI GATC 1 cut(s) 301
Sau96I GGNCC 2 cut(s) 46, 275
SchI GAGTC 1 cut(s) 357
ScrFI CCNGG 2 cut(s) 282, 283
SduI GDGCHC 2 cut(s) 322, 338
SetI ASST 5 cut(s) 29, 67, 163, 291, 338
SgrAI CRCCGGYG 1 cut(s) 166
SinI GGWCC 1 cut(s) 275
SmaI CCCGGG 1 cut(s) 283
SmiMI CAYNNNNRTG 1 cut(s) 151
Sse9I AATT 1 cut(s) 351
SsiI CCGC 6 cut(s) 99, 125, 128, 140, 143, 248
SstI GAGCTC 1 cut(s) 338
StyD4I CCNGG 2 cut(s) 280, 281
TaaI ACNGT 3 cut(s) 153, 225, 317
TaqII GACCGA 1 cut(s) 328
TasI AATT 1 cut(s) 351
TauI GCSGC 2 cut(s) 130, 145
TfiI GAWTC 1 cut(s) 214
Tru1I TTAA 2 cut(s) 312, 412
Tru9I TTAA 2 cut(s) 312, 412
TscAI CASTG 3 cut(s) 14, 94, 277
TseI GCWGC 1 cut(s) 286
TspDTI ATGAA 1 cut(s) 93
TspMI CCCGGG 1 cut(s) 281
TspRI CASTG 3 cut(s) 14, 94, 277
VpaK11BI GGWCC 1 cut(s) 275
XmaI CCCGGG 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.