Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007800

Physical Location & Seq

Genomic Coordinates Reverse (-)

26767250 .. 26768215

Gene Structure 966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G70990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGCACCCTCTTACCAAACCACCTCACCAAATTTTCAACTCTTTTTACGTCCAACCAAAGAATCTTCCCAAACCTCTCTTTATTCGATTCTCCAGGCATATAACAACTCTCACCATGCCGGAGAAAACTCGCCGTACAAAGGCTCTCGCCGCCACGCTCTTGACGACAGTGGTGTTTCTCACGTTTCCAATGATCATCAACGCTTCAGATTCATCAACCAATAGAAAACTCGAAGAGGATCCTATAAAATGTACACCATGTCTTCAAAACATTCCTCCTCCGTCACCTCCACCGCCATCACCTCCACCGCCGTCTCAAGCTTGTCCTCCACCACCACTACCTCCTTCACCGCCGAAGAAGTCTTATTGTCCACCGCCTCCGTCCACTTACATATACATGACGGGTCCACCAGGAGAGTTGTATCCCATTGACCAGCAGTTTGGAGCGGCTGTTACAAAAAGCTTCACCGTGGTGAAGATCTCAGGCCTGATCGCGTTTGGGGTTATGAGTTTCTTGATGATCATGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

176

Amino Acids

19.38

Weight (kDa)

9.63

Isoelectric Point (pI)

82.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02405 AT1G23040 AT1G23040 AT1G23040 AT1G70990
fragaria_vesca	FvH4_4g32400
malus_domestica	MD13G1025500.v1.1
prunus_persica	Prupe.1G324400_v2.0.a1
pyrus_communis	pycom13g02420
rosa_chinensis	RchiOBHm_Chr4g0441241 RchiOBHm_Chr4g0441251
rosa_laevigata	RLG00000006107 RLG00000006108
rosa_multiflora	Rmu_sc0012909.1_g000011
rosa_roxburghii	Rroxscaffold_5G00382150
rosa_rugosa	Rorug04G0331800
rosa_samantha	Rh4AG383600 Rh4AG383700 Rh4BG397700 Rh4CG412900 Rh4DG390400 Rh4DG390500
rosa_wichuraiana	Rw4G033100 Rw4G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	446
AccII	CGCG	1 cut(s)	494
AciI	CCGC	6 cut(s)	150, 293, 308, 350, 374, 446
AclWI	GGATC	2 cut(s)	233, 246
AcsI	RAATTY	1 cut(s)	30
AcuI	CTGAAG	1 cut(s)	189
AfaI	GTAC	2 cut(s)	136, 253
AfiI	CCNNNNNNNGG	1 cut(s)	139
AgsI	TTSAA	2 cut(s)	37, 266
AjnI	CCWGG	2 cut(s)	92, 409
AleI	CACNNNNGTG	1 cut(s)	470
AluBI	AGCT	2 cut(s)	320, 462
AluI	AGCT	2 cut(s)	320, 462
Alw26I	GTCTC	1 cut(s)	318
AlwI	GGATC	2 cut(s)	233, 246
AoxI	GGCC	1 cut(s)	484
ApoI	RAATTY	1 cut(s)	30
ArsI	GACNNNNNNTTYG	2 cut(s)	422, 454
AspS9I	GGNCC	1 cut(s)	404
AsuHPI	GGTGA	7 cut(s)	17, 103, 276, 291, 339, 457, 484
AvaII	GGWCC	1 cut(s)	404
BamHI	GGATCC	1 cut(s)	238
BbsI	GAAGAC	1 cut(s)	254
BccI	CCATC	1 cut(s)	304
BceAI	ACGGC	2 cut(s)	117, 295
BciT130I	CCWGG	2 cut(s)	94, 411
BciVI	GTATCC	1 cut(s)	432
BclI	TGATCA	2 cut(s)	192, 519
BcoDI	GTCTC	1 cut(s)	318
BfuI	GTATCC	1 cut(s)	432
BglII	AGATCT	1 cut(s)	477
BisI	GCNGC	2 cut(s)	150, 447
BlsI	GCNGC	2 cut(s)	151, 448
Bme1390I	CCNGG	2 cut(s)	94, 411
Bme18I	GGWCC	1 cut(s)	404
BmgT120I	GGNCC	1 cut(s)	404
BmiI	GGNNCC	2 cut(s)	240, 405
BmrFI	CCNGG	2 cut(s)	94, 411
BpiI	GAAGAC	1 cut(s)	254
BpmI	CTGGAG	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	468
BsaXI	ACNNNNNCTCC	2 cut(s)	435, 465
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
BseBI	CCWGG	2 cut(s)	94, 411
BseDI	CCNNGG	1 cut(s)	468
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseMII	CTCAG	1 cut(s)	495
BseRI	GAGGAG	1 cut(s)	267
Bsh1236I	CGCG	1 cut(s)	494
BshFI	GGCC	1 cut(s)	486
BsiSI	CCGG	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmAI	GTCTC	1 cut(s)	318
BsmBI	CGTCTC	1 cut(s)	318
BsnI	GGCC	1 cut(s)	486
Bsp1407I	TGTACA	1 cut(s)	251
Bsp143I	GATC	5 cut(s)	192, 238, 477, 489, 519
BspACI	CCGC	6 cut(s)	150, 293, 308, 350, 374, 446
BspANI	GGCC	1 cut(s)	486
BspCNI	CTCAG	1 cut(s)	494
BspFNI	CGCG	1 cut(s)	494
BspHI	TCATGA	1 cut(s)	522
BspLI	GGNNCC	2 cut(s)	240, 405
BspPI	GGATC	2 cut(s)	233, 246
BsrBI	CCGCTC	1 cut(s)	446
BsrGI	TGTACA	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	5 cut(s)	192, 238, 477, 489, 519
Bst2UI	CCWGG	2 cut(s)	94, 411
Bst4CI	ACNGT	2 cut(s)	169, 469
Bst6I	CTCTTC	1 cut(s)	228
BstAUI	TGTACA	1 cut(s)	251
BstDEI	CTNAG	1 cut(s)	481
BstDSI	CCRYGG	1 cut(s)	468
BstFNI	CGCG	1 cut(s)	494
BstKTI	GATC	5 cut(s)	195, 241, 480, 492, 522
BstMAI	GTCTC	1 cut(s)	318
BstMBI	GATC	5 cut(s)	192, 238, 477, 489, 519
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNI	CCWGG	2 cut(s)	94, 411
BstSCI	CCNGG	2 cut(s)	92, 409
BstUI	CGCG	1 cut(s)	494
BstV2I	GAAGAC	1 cut(s)	254
BstX2I	RGATCY	2 cut(s)	238, 477
BstXI	CCANNNNNNTGG	1 cut(s)	440
BstYI	RGATCY	2 cut(s)	238, 477
BsuI	GTATCC	1 cut(s)	432
BsuRI	GGCC	1 cut(s)	486
BtgI	CCRYGG	1 cut(s)	468
BtsIMutI	CAGTG	1 cut(s)	174
CciI	TCATGA	1 cut(s)	522
Cfr13I	GGNCC	1 cut(s)	404
Csp6I	GTAC	2 cut(s)	135, 252
CviAII	CATG	4 cut(s)	115, 258, 397, 523
CviJI	RGCY	5 cut(s)	143, 320, 449, 462, 486
CviKI_1	RGCY	5 cut(s)	143, 320, 449, 462, 486
CviQI	GTAC	2 cut(s)	135, 252
DdeI	CTNAG	1 cut(s)	481
DpnI	GATC	5 cut(s)	194, 240, 479, 491, 521
DpnII	GATC	5 cut(s)	192, 238, 477, 489, 519
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco147I	AGGCCT	1 cut(s)	486
Eco47I	GGWCC	1 cut(s)	404
Eco57I	CTGAAG	1 cut(s)	189
EcoRII	CCWGG	2 cut(s)	92, 409
Esp3I	CGTCTC	1 cut(s)	318
FaeI	CATG	4 cut(s)	118, 261, 400, 526
FatI	CATG	4 cut(s)	114, 257, 396, 522
FbaI	TGATCA	2 cut(s)	192, 519
Fnu4HI	GCNGC	2 cut(s)	150, 447
Fsp4HI	GCNGC	2 cut(s)	150, 447
GluI	GCNGC	2 cut(s)	150, 447
GsuI	CTGGAG	1 cut(s)	76
HaeIII	GGCC	1 cut(s)	486
HapII	CCGG	1 cut(s)	119
Hin1II	CATG	4 cut(s)	118, 261, 400, 526
HindIII	AAGCTT	2 cut(s)	318, 460
HinfI	GANTC	3 cut(s)	61, 87, 209
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	7 cut(s)	17, 103, 276, 291, 339, 457, 484
Hpy166II	GTNNAC	4 cut(s)	254, 371, 384, 407
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	3 cut(s)	160, 514, 523
Hpy8I	GTNNAC	4 cut(s)	254, 371, 384, 407
HpyAV	CCTTC	1 cut(s)	354
HpyCH4III	ACNGT	2 cut(s)	169, 469
HpyCH4IV	ACGT	2 cut(s)	48, 182
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	1 cut(s)	481
HpySE526I	ACGT	2 cut(s)	48, 182
Hsp92II	CATG	4 cut(s)	118, 261, 400, 526
Ksp22I	TGATCA	2 cut(s)	192, 519
Kzo9I	GATC	5 cut(s)	192, 238, 477, 489, 519
LmnI	GCTCC	1 cut(s)	443
LpnPI	CCDG	8 cut(s)	79, 106, 132, 396, 423, 446, 468, 500
MaeII	ACGT	2 cut(s)	48, 182
MaeIII	GTNAC	2 cut(s)	282, 451
MalI	GATC	5 cut(s)	194, 240, 479, 491, 521
MbiI	CCGCTC	1 cut(s)	446
MboI	GATC	5 cut(s)	192, 238, 477, 489, 519
MboII	GAAGA	5 cut(s)	56, 245, 254, 367, 487
MflI	RGATCY	2 cut(s)	238, 477
MluCI	AATT	2 cut(s)	30, 526
MmeI	TCCRAC	1 cut(s)	76
MslI	CAYNNNNRTG	2 cut(s)	395, 470
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	2 cut(s)	94, 411
MvaI	CCWGG	2 cut(s)	94, 411
MvnI	CGCG	1 cut(s)	494
MwoI	GCNNNNNNNGC	1 cut(s)	149
NdeII	GATC	5 cut(s)	192, 238, 477, 489, 519
NlaIII	CATG	4 cut(s)	118, 261, 400, 526
NlaIV	GGNNCC	2 cut(s)	240, 405
NmuCI	GTSAC	1 cut(s)	282
OliI	CACNNNNGTG	1 cut(s)	470
PagI	TCATGA	1 cut(s)	522
PceI	AGGCCT	1 cut(s)	486
PcsI	WCGNNNNNNNCGW	1 cut(s)	161
PfeI	GAWTC	3 cut(s)	61, 87, 209
PkrI	GCNGC	2 cut(s)	151, 448
Psp6I	CCWGG	2 cut(s)	92, 409
PspGI	CCWGG	2 cut(s)	92, 409
PspN4I	GGNNCC	2 cut(s)	240, 405
PspPI	GGNCC	1 cut(s)	404
PsuI	RGATCY	2 cut(s)	238, 477
RsaI	GTAC	2 cut(s)	136, 253
RsaNI	GTAC	2 cut(s)	135, 252
RseI	CAYNNNNRTG	2 cut(s)	395, 470
SatI	GCNGC	2 cut(s)	150, 447
Sau3AI	GATC	5 cut(s)	192, 238, 477, 489, 519
Sau96I	GGNCC	1 cut(s)	404
ScrFI	CCNGG	2 cut(s)	94, 411
SetI	ASST	9 cut(s)	25, 51, 76, 185, 289, 304, 322, 343, 464
SinI	GGWCC	1 cut(s)	404
SmiMI	CAYNNNNRTG	2 cut(s)	395, 470
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
Sse9I	AATT	2 cut(s)	30, 526
SseBI	AGGCCT	1 cut(s)	486
SsiI	CCGC	6 cut(s)	150, 293, 308, 350, 374, 446
StuI	AGGCCT	1 cut(s)	486
StyD4I	CCNGG	2 cut(s)	92, 409
TaaI	ACNGT	2 cut(s)	169, 469
TaiI	ACGT	2 cut(s)	51, 185
TaqI	TCGA	2 cut(s)	85, 231
TasI	AATT	2 cut(s)	30, 526
TatI	WGTACW	1 cut(s)	251
TauI	GCSGC	2 cut(s)	152, 449
TfiI	GAWTC	3 cut(s)	61, 87, 209
TscAI	CASTG	1 cut(s)	174
TseFI	GTSAC	1 cut(s)	282
Tsp45I	GTSAC	1 cut(s)	282
TspDTI	ATGAA	1 cut(s)	201
TspGWI	ACGGA	2 cut(s)	270, 369
TspRI	CASTG	1 cut(s)	174
VpaK11BI	GGWCC	1 cut(s)	404
XapI	RAATTY	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.