Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007800

Physical Location & Seq

Genomic Coordinates Forward (+)

31063617 .. 31064537

Gene Structure 921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g32400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGACGCACTGCTTCAAGTTTCTCAGCCTGTTCCTTCTTGCCGTGGCCCTTTTAGGAGGAGTAGCTTCCGTTCACGCCCAAGACGGCAGTGAGAAGTGCGGTGCATGCACCACTCCAAGCCCCCCACCGCCGTCTCCACCGTCGTCTCCTCCGCCGCCATCACCGTGTCCTCCTCCACCGGCGCTTGCACCTCCAACACAGGAAAATCCACCTCCTTCCCCCAAGAAACCTCCACCGTCTTCCTACTATCCTCCGCCGTCGGGGGGGTTGGTTTACATCACTGGTCCTCCCGGGCAGCTGTACCCTATTGATCAGGGCTTTAATGGTGCTCATGGAACTCGGAGCTCGATGGGGTTACTGGCTCTGCTTGGACTCGTGTTGCTGGGTGTTCTGGCTTTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

13.67

Weight (kDa)

7.69

Isoelectric Point (pI)

79.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02405 AT1G23040 AT1G23040 AT1G23040 AT1G70990
fragaria_vesca	FvH4_4g32400
malus_domestica	MD13G1025500.v1.1
prunus_persica	Prupe.1G324400_v2.0.a1
pyrus_communis	pycom13g02420
rosa_chinensis	RchiOBHm_Chr4g0441241 RchiOBHm_Chr4g0441251
rosa_laevigata	RLG00000006107 RLG00000006108
rosa_multiflora	Rmu_sc0012909.1_g000011
rosa_roxburghii	Rroxscaffold_5G00382150
rosa_rugosa	Rorug04G0331800
rosa_samantha	Rh4AG383600 Rh4AG383700 Rh4BG397700 Rh4CG412900 Rh4DG390400 Rh4DG390500
rosa_wichuraiana	Rw4G033100 Rw4G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	99, 128, 152, 155, 254
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	2 cut(s)	260, 263
AgsI	TTSAA	1 cut(s)	16
AluBI	AGCT	3 cut(s)	65, 298, 345
AluI	AGCT	3 cut(s)	65, 298, 345
Alw21I	GWGCWC	2 cut(s)	331, 347
Alw26I	GTCTC	2 cut(s)	138, 150
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	295
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	2 cut(s)	46, 284
AsuC2I	CCSGG	2 cut(s)	291, 292
AsuHPI	GGTGA	1 cut(s)	153
AvaI	CYCGRG	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	347
BauI	CACGAG	1 cut(s)	374
BbsI	GAAGAC	1 cut(s)	231
Bbv12I	GWGCWC	2 cut(s)	331, 347
BbvI	GCAGC	1 cut(s)	307
BccI	CCATC	2 cut(s)	166, 343
BceAI	ACGGC	4 cut(s)	26, 100, 115, 241
BclI	TGATCA	1 cut(s)	310
BcnI	CCSGG	2 cut(s)	291, 292
BcoDI	GTCTC	2 cut(s)	138, 150
BfoI	RGCGCY	1 cut(s)	185
BisI	GCNGC	2 cut(s)	155, 296
BlsI	GCNGC	2 cut(s)	156, 297
Bme1390I	CCNGG	2 cut(s)	291, 292
Bme18I	GGWCC	1 cut(s)	284
BmeT110I	CYCGRG	1 cut(s)	290
BmgT120I	GGNCC	2 cut(s)	46, 284
BmrFI	CCNGG	2 cut(s)	291, 292
BpiI	GAAGAC	1 cut(s)	231
BpuMI	CCSGG	2 cut(s)	291, 292
BsaJI	CCNNGG	2 cut(s)	42, 290
BsaXI	ACNNNNNCTCC	2 cut(s)	271, 301
Bsc4I	CCNNNNNNNGG	2 cut(s)	260, 263
Bse118I	RCCGGY	1 cut(s)	178
Bse1I	ACTGG	2 cut(s)	286, 363
BseDI	CCNNGG	2 cut(s)	42, 290
BseLI	CCNNNNNNNGG	2 cut(s)	260, 263
BseMII	CTCAG	1 cut(s)	37
BseNI	ACTGG	2 cut(s)	286, 363
BseRI	GAGGAG	3 cut(s)	72, 138, 162
BseXI	GCAGC	1 cut(s)	307
BseYI	CCCAGC	1 cut(s)	382
BshFI	GGCC	1 cut(s)	47
BsiHKAI	GWGCWC	2 cut(s)	331, 347
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	2 cut(s)	179, 291
BslI	CCNNNNNNNGG	2 cut(s)	260, 263
BsmAI	GTCTC	2 cut(s)	138, 150
BsmBI	CGTCTC	2 cut(s)	138, 150
BsnI	GGCC	1 cut(s)	47
BsoBI	CYCGRG	1 cut(s)	290
Bsp1286I	GDGCHC	2 cut(s)	331, 347
Bsp143I	GATC	1 cut(s)	310
BspACI	CCGC	5 cut(s)	99, 128, 152, 155, 254
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	36
BsrFI	RCCGGY	1 cut(s)	178
BsrI	ACTGG	2 cut(s)	286, 363
BssAI	RCCGGY	1 cut(s)	178
BssECI	CCNNGG	2 cut(s)	42, 290
BssMI	GATC	1 cut(s)	310
BssSI	CACGAG	1 cut(s)	374
Bst2BI	CACGAG	1 cut(s)	374
Bst4CI	ACNGT	3 cut(s)	141, 165, 237
BstC8I	GCNNGC	2 cut(s)	106, 186
BstDEI	CTNAG	1 cut(s)	23
BstDSI	CCRYGG	1 cut(s)	42
BstH2I	RGCGCY	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	1 cut(s)	313
BstMAI	GTCTC	2 cut(s)	138, 150
BstMBI	GATC	1 cut(s)	310
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNSI	RCATGY	1 cut(s)	108
BstSCI	CCNGG	2 cut(s)	289, 290
BstV1I	GCAGC	1 cut(s)	307
BstV2I	GAAGAC	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	47
BtgI	CCRYGG	1 cut(s)	42
BtsI	GCAGTG	2 cut(s)	7, 94
BtsIMutI	CAGTG	3 cut(s)	7, 94, 279
Cac8I	GCNNGC	2 cut(s)	106, 186
CfoI	GCGC	1 cut(s)	184
Cfr10I	RCCGGY	1 cut(s)	178
Cfr13I	GGNCC	2 cut(s)	46, 284
Cfr9I	CCCGGG	1 cut(s)	290
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	301
CviAII	CATG	2 cut(s)	105, 332
CviJI	RGCY	9 cut(s)	27, 47, 65, 120, 298, 318, 345, 362, 395
CviKI_1	RGCY	9 cut(s)	27, 47, 65, 120, 298, 318, 345, 362, 395
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
EciI	GGCGGA	2 cut(s)	141, 243
Ecl136II	GAGCTC	1 cut(s)	345
Eco24I	GRGCYC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	284
Eco53kI	GAGCTC	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	290
EcoICRI	GAGCTC	1 cut(s)	345
EcoT38I	GRGCYC	1 cut(s)	347
Esp3I	CGTCTC	2 cut(s)	138, 150
FaeI	CATG	2 cut(s)	108, 335
FaiI	YATR	2 cut(s)	106, 333
FatI	CATG	2 cut(s)	104, 331
FbaI	TGATCA	1 cut(s)	310
Fnu4HI	GCNGC	2 cut(s)	155, 296
FriOI	GRGCYC	1 cut(s)	347
Fsp4HI	GCNGC	2 cut(s)	155, 296
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	2 cut(s)	155, 296
GsaI	CCCAGC	1 cut(s)	386
HaeII	RGCGCY	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	2 cut(s)	179, 291
HgaI	GACGC	1 cut(s)	13
HhaI	GCGC	1 cut(s)	184
Hin1II	CATG	2 cut(s)	108, 335
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HinfI	GANTC	1 cut(s)	372
HpaII	CCGG	2 cut(s)	179, 291
HphI	GGTGA	1 cut(s)	153
Hpy166II	GTNNAC	2 cut(s)	73, 274
Hpy188I	TCNGA	1 cut(s)	342
Hpy8I	GTNNAC	2 cut(s)	73, 274
Hpy99I	CGWCG	2 cut(s)	145, 262
HpyAV	CCTTC	2 cut(s)	44, 225
HpyCH4III	ACNGT	3 cut(s)	141, 165, 237
HpyCH4V	TGCA	3 cut(s)	104, 108, 188
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	1 cut(s)	23
Hsp92II	CATG	2 cut(s)	108, 335
HspAI	GCGC	1 cut(s)	182
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	1 cut(s)	310
LmnI	GCTCC	1 cut(s)	342
LpnPI	CCDG	9 cut(s)	41, 185, 192, 267, 299, 304, 344, 368, 377
Lsp1109I	GCAGC	1 cut(s)	307
MaeIII	GTNAC	1 cut(s)	354
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	1 cut(s)	231
MhlI	GDGCHC	2 cut(s)	331, 347
MlyI	GAGTC	1 cut(s)	366
MmeI	TCCRAC	1 cut(s)	218
MnlI	CCTC	9 cut(s)	50, 159, 180, 183, 201, 222, 240, 261, 297
MseI	TTAA	1 cut(s)	321
MslI	CAYNNNNRTG	1 cut(s)	163
MspA1I	CMGCKG	1 cut(s)	298
MspI	CCGG	2 cut(s)	179, 291
MspR9I	CCNGG	2 cut(s)	291, 292
MwoI	GCNNNNNNNGC	1 cut(s)	105
NciI	CCSGG	2 cut(s)	291, 292
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	2 cut(s)	108, 335
NspI	RCATGY	1 cut(s)	108
PaeI	GCATGC	1 cut(s)	108
PkrI	GCNGC	2 cut(s)	156, 297
PleI	GAGTC	1 cut(s)	366
PpsI	GAGTC	1 cut(s)	366
Psp124BI	GAGCTC	1 cut(s)	347
PspFI	CCCAGC	1 cut(s)	382
PspPI	GGNCC	2 cut(s)	46, 284
PsrI	GAACNNNNNNTAC	2 cut(s)	54, 86
PvuII	CAGCTG	1 cut(s)	298
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
RseI	CAYNNNNRTG	1 cut(s)	163
SacI	GAGCTC	1 cut(s)	347
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	2 cut(s)	155, 296
Sau3AI	GATC	1 cut(s)	310
Sau96I	GGNCC	2 cut(s)	46, 284
SchI	GAGTC	1 cut(s)	366
ScrFI	CCNGG	2 cut(s)	291, 292
SduI	GDGCHC	2 cut(s)	331, 347
SetI	ASST	6 cut(s)	67, 193, 214, 232, 300, 347
SgrAI	CRCCGGYG	1 cut(s)	178
SinI	GGWCC	1 cut(s)	284
SmaI	CCCGGG	1 cut(s)	292
SmiMI	CAYNNNNRTG	1 cut(s)	163
SphI	GCATGC	1 cut(s)	108
SsiI	CCGC	5 cut(s)	99, 128, 152, 155, 254
SstI	GAGCTC	1 cut(s)	347
StyD4I	CCNGG	2 cut(s)	289, 290
TaaI	ACNGT	3 cut(s)	141, 165, 237
TaqI	TCGA	1 cut(s)	347
TauI	GCSGC	1 cut(s)	157
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	3 cut(s)	14, 94, 286
TseI	GCWGC	1 cut(s)	295
TspGWI	ACGGA	1 cut(s)	58
TspMI	CCCGGG	1 cut(s)	290
TspRI	CASTG	3 cut(s)	14, 94, 286
VpaK11BI	GGWCC	1 cut(s)	284
XceI	RCATGY	1 cut(s)	108
XmaI	CCCGGG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.