Prupe.1G324400_v2.0.a1

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0007800
Physical Location & Seq
Forward (+)
30954278 .. 30956181
1904 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G324400.1

Sequence Viewer

Length: 453 bp
ATGCCGATCAAAATGCGTTGCTTTAAACCTCCGGCCCTGGCTATGATTGCCATGTTCCTTTTGATTGCCTCCGTTGCAGGTCCAGTCTACGCTGACGAAACCCCACCCGCGCCTGGCGAGGAAAAGTGCGGCTCGTGCTCTCAAAGCCCCCCTCCGCCATCACCGCCACCACCATCTCCGCCGCCACCGTCATTGCCGCCGCCTTCTCCCAAAAAACCACCGCCGTCCACTCCGTACTGCCCTCCGCCGCCATCGACGCCATCGACGCCATCGACGCCATCAACGCCATCAACGCCATCAACACCGTCCACGCCGTTGATATACATCACCGGTCCACCGGGGGACTTGTACCCTGTTGACCATAGTTTCAATGGTGCTAGCCGGAGTTTGGTCACGGGGTTACCGGTTTTGGTTGGCTGTGGATTGTTGGGTCTTCTTCTGGCCTTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

15.35

Weight (kDa)

7.6

Isoelectric Point (pI)

83.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 68
AccI GTMKAC 1 cut(s) 87
AccII CGCG 1 cut(s) 110
AcyI GRCGYC 3 cut(s) 257, 266, 275
AfaI GTAC 2 cut(s) 236, 350
AfiI CCNNNNNNNGG 2 cut(s) 113, 388
AgeI ACCGGT 2 cut(s) 329, 403
AgsI TTSAA 1 cut(s) 370
AjnI CCWGG 2 cut(s) 36, 112
Alw21I GWGCWC 1 cut(s) 140
AoxI GGCC 2 cut(s) 33, 441
AsiGI ACCGGT 2 cut(s) 329, 403
AspLEI GCGC 1 cut(s) 112
AspS9I GGNCC 3 cut(s) 34, 80, 332
AsuC2I CCSGG 1 cut(s) 339
AsuHPI GGTGA 2 cut(s) 153, 319
AsuNHI GCTAGC 1 cut(s) 377
AvaII GGWCC 2 cut(s) 80, 332
BauI CACGAG 1 cut(s) 133
BbsI GAAGAC 1 cut(s) 425
Bbv12I GWGCWC 1 cut(s) 140
BccI CCATC 8 cut(s) 166, 181, 259, 268, 277, 286, 295, 304
BceAI ACGGC 2 cut(s) 208, 298
BcgI CGANNNNNNTGC 1 cut(s) 29
BciT130I CCWGG 2 cut(s) 38, 114
BcnI CCSGG 1 cut(s) 339
BfaI CTAG 1 cut(s) 378
BfuAI ACCTGC 1 cut(s) 68
BisI GCNGC 5 cut(s) 130, 182, 197, 200, 248
BlsI GCNGC 5 cut(s) 131, 183, 198, 201, 249
Bme1390I CCNGG 3 cut(s) 38, 114, 339
Bme18I GGWCC 2 cut(s) 80, 332
BmgT120I GGNCC 3 cut(s) 34, 80, 332
BmrFI CCNGG 3 cut(s) 38, 114, 339
BmtI GCTAGC 1 cut(s) 381
BpiI GAAGAC 1 cut(s) 425
BpuMI CCSGG 1 cut(s) 339
BsaBI GATNNNNATC 1 cut(s) 323
BsaHI GRCGYC 3 cut(s) 257, 266, 275
BsaJI CCNNGG 2 cut(s) 36, 338
BsaWI WCCGGW 2 cut(s) 329, 403
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 388
Bse118I RCCGGY 2 cut(s) 329, 403
Bse1I ACTGG 1 cut(s) 83
Bse3DI GCAATG 1 cut(s) 191
Bse8I GATNNNNATC 1 cut(s) 323
BseBI CCWGG 2 cut(s) 38, 114
BseDI CCNNGG 2 cut(s) 36, 338
BseJI GATNNNNATC 1 cut(s) 323
BseLI CCNNNNNNNGG 2 cut(s) 113, 388
BseMI GCAATG 1 cut(s) 191
BseNI ACTGG 1 cut(s) 83
Bsh1236I CGCG 1 cut(s) 110
BshFI GGCC 2 cut(s) 35, 443
BshTI ACCGGT 2 cut(s) 329, 403
BsiHKAI GWGCWC 1 cut(s) 140
BsiSI CCGG 5 cut(s) 32, 330, 338, 382, 404
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 2 cut(s) 113, 388
BsmFI GGGAC 1 cut(s) 356
BsnI GGCC 2 cut(s) 35, 443
Bsp1286I GDGCHC 1 cut(s) 140
Bsp143I GATC 1 cut(s) 6
BspANI GGCC 2 cut(s) 35, 443
BspFNI CGCG 1 cut(s) 110
BspMI ACCTGC 1 cut(s) 68
BspOI GCTAGC 1 cut(s) 381
BsrDI GCAATG 1 cut(s) 191
BsrFI RCCGGY 2 cut(s) 329, 403
BsrI ACTGG 1 cut(s) 83
BssAI RCCGGY 2 cut(s) 329, 403
BssECI CCNNGG 2 cut(s) 36, 338
BssMI GATC 1 cut(s) 6
BssNI GRCGYC 3 cut(s) 257, 266, 275
BssSI CACGAG 1 cut(s) 133
Bst2BI CACGAG 1 cut(s) 133
Bst2UI CCWGG 2 cut(s) 38, 114
Bst4CI ACNGT 2 cut(s) 189, 306
BstACI GRCGYC 3 cut(s) 257, 266, 275
BstC8I GCNNGC 1 cut(s) 379
BstEII GGTNACC 1 cut(s) 399
BstFNI CGCG 1 cut(s) 110
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 1 cut(s) 9
BstMBI GATC 1 cut(s) 6
BstNI CCWGG 2 cut(s) 38, 114
BstPI GGTNACC 1 cut(s) 399
BstSCI CCNGG 3 cut(s) 36, 112, 337
BstUI CGCG 1 cut(s) 110
BstV2I GAAGAC 1 cut(s) 425
BsuRI GGCC 2 cut(s) 35, 443
BveI ACCTGC 1 cut(s) 68
Cac8I GCNNGC 1 cut(s) 379
CfoI GCGC 1 cut(s) 112
Cfr10I RCCGGY 2 cut(s) 329, 403
Cfr13I GGNCC 3 cut(s) 34, 80, 332
CseI GACGC 3 cut(s) 265, 274, 283
Csp6I GTAC 2 cut(s) 235, 349
CspAI ACCGGT 2 cut(s) 329, 403
CspCI CAANNNNNGTGG 2 cut(s) 174, 209
CviAII CATG 1 cut(s) 52
CviJI RGCY 7 cut(s) 35, 41, 132, 147, 381, 417, 443
CviKI_1 RGCY 7 cut(s) 35, 41, 132, 147, 381, 417, 443
CviQI GTAC 2 cut(s) 235, 349
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
DraI TTTAAA 1 cut(s) 25
EciI GGCGGA 3 cut(s) 144, 168, 234
Eco47I GGWCC 2 cut(s) 80, 332
Eco91I GGTNACC 1 cut(s) 399
EcoO65I GGTNACC 1 cut(s) 399
EcoRII CCWGG 2 cut(s) 36, 112
FaeI CATG 1 cut(s) 55
FaiI YATR 4 cut(s) 44, 53, 322, 363
FaqI GGGAC 1 cut(s) 356
FatI CATG 1 cut(s) 51
FauI CCCGC 1 cut(s) 115
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 5 cut(s) 130, 182, 197, 200, 248
Fsp4HI GCNGC 5 cut(s) 130, 182, 197, 200, 248
FspBI CTAG 1 cut(s) 378
GlaI GCGC 1 cut(s) 111
GluI GCNGC 5 cut(s) 130, 182, 197, 200, 248
HaeIII GGCC 2 cut(s) 35, 443
HapII CCGG 5 cut(s) 32, 330, 338, 382, 404
HgaI GACGC 3 cut(s) 265, 274, 283
HhaI GCGC 1 cut(s) 112
Hin1I GRCGYC 3 cut(s) 257, 266, 275
Hin1II CATG 1 cut(s) 55
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HpaII CCGG 5 cut(s) 32, 330, 338, 382, 404
HphI GGTGA 2 cut(s) 153, 319
Hpy166II GTNNAC 5 cut(s) 88, 228, 309, 335, 358
Hpy8I GTNNAC 5 cut(s) 88, 228, 309, 335, 358
Hpy99I CGWCG 3 cut(s) 259, 268, 277
HpyAV CCTTC 1 cut(s) 213
HpyCH4III ACNGT 2 cut(s) 189, 306
HpyCH4V TGCA 1 cut(s) 77
Hsp92I GRCGYC 3 cut(s) 257, 266, 275
Hsp92II CATG 1 cut(s) 55
HspAI GCGC 1 cut(s) 110
Kzo9I GATC 1 cut(s) 6
MaeI CTAG 1 cut(s) 378
MaeIII GTNAC 2 cut(s) 391, 399
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 2 cut(s) 425, 428
MhlI GDGCHC 1 cut(s) 140
MnlI CCTC 5 cut(s) 39, 79, 112, 162, 252
MseI TTAA 1 cut(s) 24
MspI CCGG 5 cut(s) 32, 330, 338, 382, 404
MspR9I CCNGG 3 cut(s) 38, 114, 339
MvaI CCWGG 2 cut(s) 38, 114
MvnI CGCG 1 cut(s) 110
NciI CCSGG 1 cut(s) 339
NdeII GATC 1 cut(s) 6
NheI GCTAGC 1 cut(s) 377
NlaIII CATG 1 cut(s) 55
NmuCI GTSAC 1 cut(s) 391
PcsI WCGNNNNNNNCGW 2 cut(s) 260, 269
PinAI ACCGGT 2 cut(s) 329, 403
PkrI GCNGC 5 cut(s) 131, 183, 198, 201, 249
Psp6I CCWGG 2 cut(s) 36, 112
PspEI GGTNACC 1 cut(s) 399
PspGI CCWGG 2 cut(s) 36, 112
PspPI GGNCC 3 cut(s) 34, 80, 332
RsaI GTAC 2 cut(s) 236, 350
RsaNI GTAC 2 cut(s) 235, 349
SaqAI TTAA 1 cut(s) 24
SatI GCNGC 5 cut(s) 130, 182, 197, 200, 248
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 3 cut(s) 34, 80, 332
ScrFI CCNGG 3 cut(s) 38, 114, 339
SduI GDGCHC 1 cut(s) 140
SetI ASST 2 cut(s) 31, 82
SinI GGWCC 2 cut(s) 80, 332
SspMI CTAG 1 cut(s) 378
StyD4I CCNGG 3 cut(s) 36, 112, 337
TaaI ACNGT 2 cut(s) 189, 306
TaqI TCGA 3 cut(s) 254, 263, 272
TauI GCSGC 5 cut(s) 132, 184, 199, 202, 250
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TseFI GTSAC 1 cut(s) 391
Tsp45I GTSAC 1 cut(s) 391
TspGWI ACGGA 2 cut(s) 61, 222
VpaK11BI GGWCC 2 cut(s) 80, 332
XcmI CCANNNNNNNNNTGG 1 cut(s) 368
XmiI GTMKAC 1 cut(s) 87
XspI CTAG 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.