Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0007800

Physical Location & Seq

Genomic Coordinates Forward (+)

69025514 .. 69025909

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG383700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGATGCACTGCTTCAAGATTCTCAGCTTGTTCCTTGTTGCTGTGGCCCTTTTAGGAGGAGGAGCTTCCGTCCACGCCCAAGACGGCGGAGATAAGTGCGGTGCATGCACCACTCCAAGCCCCCCGCCGCCGTCTCCTCCTCCGCCATCACCGTCTCCTCCTCCACCGGCGCTTCCACCACCAACACCGGTTCATCCCCCTCCTTCCCCCAAGAAGCCTCCACCGTCCACTCCGTACTGCCCTCCGCCACCGTCGTCGTTGGTTTACATCACCGGTCCTCCCGGGGAGCTGTACCCTGTTGATCATTACTTTAATGGTGCTGATGGAGTGAGGAGCTCGGTCGGGTTACCGGTTCTGCTCGGACTCGGATTGCTGGGTGTTCTGGCGTTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

13.3

Weight (kDa)

6.87

Isoelectric Point (pI)

90.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02405 AT1G23040 AT1G23040 AT1G23040 AT1G70990
fragaria_vesca	FvH4_4g32400
malus_domestica	MD13G1025500.v1.1
prunus_persica	Prupe.1G324400_v2.0.a1
pyrus_communis	pycom13g02420
rosa_chinensis	RchiOBHm_Chr4g0441241 RchiOBHm_Chr4g0441251
rosa_laevigata	RLG00000006107 RLG00000006108
rosa_multiflora	Rmu_sc0012909.1_g000011
rosa_roxburghii	Rroxscaffold_5G00382150
rosa_rugosa	Rorug04G0331800
rosa_samantha	Rh4AG383600 Rh4AG383700 Rh4BG397700 Rh4CG412900 Rh4DG390400 Rh4DG390500
rosa_wichuraiana	Rw4G033100 Rw4G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	87, 99, 125, 128, 143, 245
AfaI	GTAC	2 cut(s)	236, 293
AgeI	ACCGGT	3 cut(s)	187, 272, 349
AgsI	TTSAA	1 cut(s)	16
AluBI	AGCT	4 cut(s)	27, 65, 289, 336
AluI	AGCT	4 cut(s)	27, 65, 289, 336
Alw21I	GWGCWC	1 cut(s)	338
Alw26I	GTCTC	2 cut(s)	138, 159
Ama87I	CYCGRG	1 cut(s)	281
AoxI	GGCC	1 cut(s)	45
AsiGI	ACCGGT	3 cut(s)	187, 272, 349
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	2 cut(s)	46, 275
AsuC2I	CCSGG	2 cut(s)	282, 283
AsuHPI	GGTGA	2 cut(s)	141, 262
AvaI	CYCGRG	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	338
BccI	CCATC	2 cut(s)	154, 317
BceAI	ACGGC	2 cut(s)	100, 115
BclI	TGATCA	1 cut(s)	301
BcnI	CCSGG	2 cut(s)	282, 283
BcoDI	GTCTC	2 cut(s)	138, 159
BfoI	RGCGCY	1 cut(s)	173
BisI	GCNGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	129
Bme1390I	CCNGG	2 cut(s)	282, 283
Bme18I	GGWCC	1 cut(s)	275
BmeT110I	CYCGRG	1 cut(s)	281
BmgT120I	GGNCC	2 cut(s)	46, 275
BmrFI	CCNGG	2 cut(s)	282, 283
BpuMI	CCSGG	2 cut(s)	282, 283
BsaJI	CCNNGG	2 cut(s)	281, 282
BsaWI	WCCGGW	3 cut(s)	187, 272, 349
BsaXI	ACNNNNNCTCC	4 cut(s)	54, 84, 262, 292
Bse118I	RCCGGY	4 cut(s)	166, 187, 272, 349
BseDI	CCNNGG	2 cut(s)	281, 282
BseGI	GGATG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	37
BseRI	GAGGAG	7 cut(s)	72, 75, 126, 129, 147, 150, 346
BseYI	CCCAGC	1 cut(s)	373
Bsh1285I	CGRYCG	1 cut(s)	342
BshFI	GGCC	1 cut(s)	47
BshTI	ACCGGT	3 cut(s)	187, 272, 349
BsiEI	CGRYCG	1 cut(s)	342
BsiHKAI	GWGCWC	1 cut(s)	338
BsiHKCI	CYCGRG	1 cut(s)	281
BsiSI	CCGG	5 cut(s)	167, 188, 273, 282, 350
BsmAI	GTCTC	2 cut(s)	138, 159
BsmBI	CGTCTC	2 cut(s)	138, 159
BsnI	GGCC	1 cut(s)	47
BsoBI	CYCGRG	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	338
Bsp143I	GATC	1 cut(s)	301
BspACI	CCGC	6 cut(s)	87, 99, 125, 128, 143, 245
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	36
BsrFI	RCCGGY	4 cut(s)	166, 187, 272, 349
BssAI	RCCGGY	4 cut(s)	166, 187, 272, 349
BssECI	CCNNGG	2 cut(s)	281, 282
BssMI	GATC	1 cut(s)	301
Bst4CI	ACNGT	3 cut(s)	153, 225, 252
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	1 cut(s)	23
BstEII	GGTNACC	1 cut(s)	345
BstF5I	GGATG	1 cut(s)	193
BstH2I	RGCGCY	1 cut(s)	173
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	1 cut(s)	304
BstMAI	GTCTC	2 cut(s)	138, 159
BstMBI	GATC	1 cut(s)	301
BstMCI	CGRYCG	1 cut(s)	342
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNSI	RCATGY	1 cut(s)	108
BstPI	GGTNACC	1 cut(s)	345
BstSCI	CCNGG	2 cut(s)	280, 281
BsuRI	GGCC	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	193
BtsI	GCAGTG	1 cut(s)	7
BtsIMutI	CAGTG	1 cut(s)	7
Cac8I	GCNNGC	1 cut(s)	106
CfoI	GCGC	1 cut(s)	172
Cfr10I	RCCGGY	4 cut(s)	166, 187, 272, 349
Cfr13I	GGNCC	2 cut(s)	46, 275
Cfr9I	CCCGGG	1 cut(s)	281
Csp6I	GTAC	2 cut(s)	235, 292
CspAI	ACCGGT	3 cut(s)	187, 272, 349
CviAII	CATG	1 cut(s)	105
CviJI	RGCY	7 cut(s)	27, 47, 65, 120, 217, 289, 336
CviKI_1	RGCY	7 cut(s)	27, 47, 65, 120, 217, 289, 336
CviQI	GTAC	2 cut(s)	235, 292
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
EciI	GGCGGA	3 cut(s)	102, 132, 234
Ecl136II	GAGCTC	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	338
Eco47I	GGWCC	1 cut(s)	275
Eco53kI	GAGCTC	1 cut(s)	336
Eco88I	CYCGRG	1 cut(s)	281
Eco91I	GGTNACC	1 cut(s)	345
EcoICRI	GAGCTC	1 cut(s)	336
EcoO65I	GGTNACC	1 cut(s)	345
EcoT38I	GRGCYC	1 cut(s)	338
Esp3I	CGTCTC	2 cut(s)	138, 159
FaeI	CATG	1 cut(s)	108
FaiI	YATR	1 cut(s)	106
FatI	CATG	1 cut(s)	104
FauI	CCCGC	1 cut(s)	132
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	1 cut(s)	128
FokI	GGATG	1 cut(s)	180
FriOI	GRGCYC	1 cut(s)	338
Fsp4HI	GCNGC	1 cut(s)	128
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	1 cut(s)	128
GsaI	CCCAGC	1 cut(s)	377
HaeII	RGCGCY	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	5 cut(s)	167, 188, 273, 282, 350
HhaI	GCGC	1 cut(s)	172
Hin1II	CATG	1 cut(s)	108
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HinfI	GANTC	2 cut(s)	19, 363
HpaII	CCGG	5 cut(s)	167, 188, 273, 282, 350
HphI	GGTGA	2 cut(s)	141, 262
Hpy166II	GTNNAC	3 cut(s)	73, 228, 265
Hpy188I	TCNGA	2 cut(s)	362, 368
Hpy188III	TCNNGA	1 cut(s)	16
Hpy8I	GTNNAC	3 cut(s)	73, 228, 265
Hpy99I	CGWCG	2 cut(s)	256, 259
HpyAV	CCTTC	1 cut(s)	213
HpyCH4III	ACNGT	3 cut(s)	153, 225, 252
HpyCH4V	TGCA	3 cut(s)	7, 104, 108
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	1 cut(s)	23
Hsp92II	CATG	1 cut(s)	108
HspAI	GCGC	1 cut(s)	170
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	1 cut(s)	301
LmnI	GCTCC	3 cut(s)	62, 286, 333
LpnPI	CCDG	8 cut(s)	180, 201, 286, 295, 309, 359, 363, 368
MaeIII	GTNAC	1 cut(s)	345
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MhlI	GDGCHC	1 cut(s)	338
MlyI	GAGTC	1 cut(s)	357
MseI	TTAA	1 cut(s)	312
MspI	CCGG	5 cut(s)	167, 188, 273, 282, 350
MspR9I	CCNGG	2 cut(s)	282, 283
MwoI	GCNNNNNNNGC	1 cut(s)	105
NciI	CCSGG	2 cut(s)	282, 283
NdeII	GATC	1 cut(s)	301
NlaIII	CATG	1 cut(s)	108
NspI	RCATGY	1 cut(s)	108
PaeI	GCATGC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	19
PinAI	ACCGGT	3 cut(s)	187, 272, 349
PkrI	GCNGC	1 cut(s)	129
PleI	GAGTC	1 cut(s)	357
PpsI	GAGTC	1 cut(s)	357
Psp124BI	GAGCTC	1 cut(s)	338
PspEI	GGTNACC	1 cut(s)	345
PspFI	CCCAGC	1 cut(s)	373
PspPI	GGNCC	2 cut(s)	46, 275
RsaI	GTAC	2 cut(s)	236, 293
RsaNI	GTAC	2 cut(s)	235, 292
SacI	GAGCTC	1 cut(s)	338
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	1 cut(s)	128
Sau3AI	GATC	1 cut(s)	301
Sau96I	GGNCC	2 cut(s)	46, 275
SchI	GAGTC	1 cut(s)	357
ScrFI	CCNGG	2 cut(s)	282, 283
SduI	GDGCHC	1 cut(s)	338
SetI	ASST	4 cut(s)	29, 67, 291, 338
SgrAI	CRCCGGYG	1 cut(s)	166
SinI	GGWCC	1 cut(s)	275
SmaI	CCCGGG	1 cut(s)	283
SphI	GCATGC	1 cut(s)	108
SsiI	CCGC	6 cut(s)	87, 99, 125, 128, 143, 245
SstI	GAGCTC	1 cut(s)	338
StyD4I	CCNGG	2 cut(s)	280, 281
TaaI	ACNGT	3 cut(s)	153, 225, 252
TaqII	GACCGA	1 cut(s)	328
TauI	GCSGC	1 cut(s)	130
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TscAI	CASTG	1 cut(s)	14
TspDTI	ATGAA	1 cut(s)	182
TspGWI	ACGGA	2 cut(s)	58, 222
TspMI	CCCGGG	1 cut(s)	281
TspRI	CASTG	1 cut(s)	14
VpaK11BI	GGWCC	1 cut(s)	275
XceI	RCATGY	1 cut(s)	108
XmaI	CCCGGG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.