Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0007800

Physical Location & Seq

Genomic Coordinates Forward (+)

65775785 .. 65776198

Gene Structure 414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG412900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGACGCACTGCTTCAAGTTTCTCAGCTTGTTCCTTGTTGCTGTGGCCCTTTTAGGAGGAGGAGCTTCGGTTCGCGCCCAAGACGGCAGTGAGAAGTGCGGTTCATGCGCTACACCCAGCCCCCCTCCGCCGTCTCCTCCGCCGCCATCACCGTGTCCACCTCCACCGGCGCTTCCACCACCAACACCGGTTCTTCCCCCTCCTTCCCCCAAGAATCCTCCACCGTCCACTTCGTACTGCCCTCCTCCGCCGTCGTCGTTGATTTACATCACCGGTCCTCCCGGGCAGCTGTACCCTGTTGATCAGGACTTTAATGGTGCTCATGGAGTGAGGAGCTCGGTCGGCTTACCAATTCTGCTCGGACTCGGATTGCTGGTGTTCTGGCGTTTTGGTGAGCAGGCCGGACTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

14.05

Weight (kDa)

6.69

Isoelectric Point (pI)

78.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02405 AT1G23040 AT1G23040 AT1G23040 AT1G70990
fragaria_vesca	FvH4_4g32400
malus_domestica	MD13G1025500.v1.1
prunus_persica	Prupe.1G324400_v2.0.a1
pyrus_communis	pycom13g02420
rosa_chinensis	RchiOBHm_Chr4g0441241 RchiOBHm_Chr4g0441251
rosa_laevigata	RLG00000006107 RLG00000006108
rosa_multiflora	Rmu_sc0012909.1_g000011
rosa_roxburghii	Rroxscaffold_5G00382150
rosa_rugosa	Rorug04G0331800
rosa_samantha	Rh4AG383600 Rh4AG383700 Rh4BG397700 Rh4CG412900 Rh4DG390400 Rh4DG390500
rosa_wichuraiana	Rw4G033100 Rw4G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	75
AciI	CCGC	5 cut(s)	99, 128, 140, 143, 248
AfaI	GTAC	2 cut(s)	236, 293
AgeI	ACCGGT	2 cut(s)	187, 272
AgsI	TTSAA	1 cut(s)	16
AloI	GAACNNNNNNTCC	2 cut(s)	54, 86
AluBI	AGCT	4 cut(s)	27, 65, 289, 336
AluI	AGCT	4 cut(s)	27, 65, 289, 336
Alw21I	GWGCWC	2 cut(s)	322, 338
Alw26I	GTCTC	1 cut(s)	138
Ama87I	CYCGRG	1 cut(s)	281
AoxI	GGCC	2 cut(s)	45, 399
ApeKI	GCWGC	1 cut(s)	286
AsiGI	ACCGGT	2 cut(s)	187, 272
AspLEI	GCGC	3 cut(s)	77, 110, 172
AspS9I	GGNCC	2 cut(s)	46, 275
AsuC2I	CCSGG	2 cut(s)	282, 283
AsuHPI	GGTGA	3 cut(s)	141, 262, 404
AvaI	CYCGRG	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	338
Bbv12I	GWGCWC	2 cut(s)	322, 338
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	1 cut(s)	154
BceAI	ACGGC	3 cut(s)	100, 115, 235
BclI	TGATCA	1 cut(s)	301
BcnI	CCSGG	2 cut(s)	282, 283
BcoDI	GTCTC	1 cut(s)	138
BfoI	RGCGCY	1 cut(s)	173
BisI	GCNGC	2 cut(s)	143, 287
BlsI	GCNGC	2 cut(s)	144, 288
Bme1390I	CCNGG	2 cut(s)	282, 283
Bme18I	GGWCC	1 cut(s)	275
BmeT110I	CYCGRG	1 cut(s)	281
BmgT120I	GGNCC	2 cut(s)	46, 275
BmrFI	CCNGG	2 cut(s)	282, 283
BpuMI	CCSGG	2 cut(s)	282, 283
BsaBI	GATNNNNATC	1 cut(s)	266
BsaJI	CCNNGG	1 cut(s)	281
BsaWI	WCCGGW	2 cut(s)	187, 272
BsaXI	ACNNNNNCTCC	4 cut(s)	54, 84, 262, 292
Bse118I	RCCGGY	3 cut(s)	166, 187, 272
Bse8I	GATNNNNATC	1 cut(s)	266
BseDI	CCNNGG	1 cut(s)	281
BseJI	GATNNNNATC	1 cut(s)	266
BseMII	CTCAG	1 cut(s)	37
BseRI	GAGGAG	5 cut(s)	72, 75, 126, 234, 346
BseXI	GCAGC	1 cut(s)	298
BseYI	CCCAGC	1 cut(s)	116
Bsh1236I	CGCG	1 cut(s)	75
Bsh1285I	CGRYCG	1 cut(s)	342
BshFI	GGCC	2 cut(s)	47, 401
BshTI	ACCGGT	2 cut(s)	187, 272
BsiEI	CGRYCG	1 cut(s)	342
BsiHKAI	GWGCWC	2 cut(s)	322, 338
BsiHKCI	CYCGRG	1 cut(s)	281
BsiSI	CCGG	5 cut(s)	167, 188, 273, 282, 402
BsmAI	GTCTC	1 cut(s)	138
BsmBI	CGTCTC	1 cut(s)	138
BsnI	GGCC	2 cut(s)	47, 401
BsoBI	CYCGRG	1 cut(s)	281
Bsp1286I	GDGCHC	2 cut(s)	322, 338
Bsp143I	GATC	1 cut(s)	301
BspACI	CCGC	5 cut(s)	99, 128, 140, 143, 248
BspANI	GGCC	2 cut(s)	47, 401
BspCNI	CTCAG	1 cut(s)	36
BspFNI	CGCG	1 cut(s)	75
BsrFI	RCCGGY	3 cut(s)	166, 187, 272
BssAI	RCCGGY	3 cut(s)	166, 187, 272
BssECI	CCNNGG	1 cut(s)	281
BssMI	GATC	1 cut(s)	301
Bst4CI	ACNGT	2 cut(s)	153, 225
BstC8I	GCNNGC	1 cut(s)	399
BstDEI	CTNAG	1 cut(s)	23
BstFNI	CGCG	1 cut(s)	75
BstH2I	RGCGCY	1 cut(s)	173
BstHHI	GCGC	3 cut(s)	77, 110, 172
BstKTI	GATC	1 cut(s)	304
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	301
BstMCI	CGRYCG	1 cut(s)	342
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 342
BstSCI	CCNGG	2 cut(s)	280, 281
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	1 cut(s)	298
BsuRI	GGCC	2 cut(s)	47, 401
BtsI	GCAGTG	2 cut(s)	7, 94
BtsIMutI	CAGTG	2 cut(s)	7, 94
Cac8I	GCNNGC	1 cut(s)	399
CfoI	GCGC	3 cut(s)	77, 110, 172
Cfr10I	RCCGGY	3 cut(s)	166, 187, 272
Cfr13I	GGNCC	2 cut(s)	46, 275
Cfr9I	CCCGGG	1 cut(s)	281
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	2 cut(s)	235, 292
CspAI	ACCGGT	2 cut(s)	187, 272
CviAII	CATG	2 cut(s)	105, 323
CviJI	RGCY	8 cut(s)	27, 47, 65, 120, 289, 336, 345, 401
CviKI_1	RGCY	8 cut(s)	27, 47, 65, 120, 289, 336, 345, 401
CviQI	GTAC	2 cut(s)	235, 292
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
EciI	GGCGGA	3 cut(s)	117, 129, 237
Ecl136II	GAGCTC	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	338
Eco47I	GGWCC	1 cut(s)	275
Eco53kI	GAGCTC	1 cut(s)	336
Eco88I	CYCGRG	1 cut(s)	281
EcoICRI	GAGCTC	1 cut(s)	336
EcoT38I	GRGCYC	1 cut(s)	338
Esp3I	CGTCTC	1 cut(s)	138
FaeI	CATG	2 cut(s)	108, 326
FaiI	YATR	2 cut(s)	106, 324
FatI	CATG	2 cut(s)	104, 322
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	2 cut(s)	143, 287
FriOI	GRGCYC	1 cut(s)	338
Fsp4HI	GCNGC	2 cut(s)	143, 287
GlaI	GCGC	3 cut(s)	76, 109, 171
GluI	GCNGC	2 cut(s)	143, 287
GsaI	CCCAGC	1 cut(s)	120
HaeII	RGCGCY	1 cut(s)	173
HaeIII	GGCC	2 cut(s)	47, 401
HapII	CCGG	5 cut(s)	167, 188, 273, 282, 402
HgaI	GACGC	1 cut(s)	13
HhaI	GCGC	3 cut(s)	77, 110, 172
Hin1II	CATG	2 cut(s)	108, 326
Hin6I	GCGC	3 cut(s)	75, 108, 170
HinP1I	GCGC	3 cut(s)	75, 108, 170
HinfI	GANTC	2 cut(s)	214, 363
HpaII	CCGG	5 cut(s)	167, 188, 273, 282, 402
HphI	GGTGA	3 cut(s)	141, 262, 404
Hpy166II	GTNNAC	2 cut(s)	158, 228
Hpy188I	TCNGA	2 cut(s)	362, 368
Hpy188III	TCNNGA	1 cut(s)	305
Hpy8I	GTNNAC	2 cut(s)	158, 228
Hpy99I	CGWCG	2 cut(s)	256, 259
HpyAV	CCTTC	1 cut(s)	213
HpyCH4III	ACNGT	2 cut(s)	153, 225
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 342
HpyF3I	CTNAG	1 cut(s)	23
Hsp92II	CATG	2 cut(s)	108, 326
HspAI	GCGC	3 cut(s)	75, 108, 170
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	1 cut(s)	301
LmnI	GCTCC	2 cut(s)	62, 333
Lsp1109I	GCAGC	1 cut(s)	298
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MboII	GAAGA	1 cut(s)	185
MhlI	GDGCHC	2 cut(s)	322, 338
MluCI	AATT	1 cut(s)	351
MlyI	GAGTC	1 cut(s)	357
MseI	TTAA	2 cut(s)	312, 412
MslI	CAYNNNNRTG	1 cut(s)	151
MspA1I	CMGCKG	1 cut(s)	289
MspI	CCGG	5 cut(s)	167, 188, 273, 282, 402
MspR9I	CCNGG	2 cut(s)	282, 283
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	2 cut(s)	105, 342
NciI	CCSGG	2 cut(s)	282, 283
NdeII	GATC	1 cut(s)	301
NlaIII	CATG	2 cut(s)	108, 326
PfeI	GAWTC	1 cut(s)	214
PinAI	ACCGGT	2 cut(s)	187, 272
PkrI	GCNGC	2 cut(s)	144, 288
PleI	GAGTC	1 cut(s)	357
PpsI	GAGTC	1 cut(s)	357
Psp124BI	GAGCTC	1 cut(s)	338
PspFI	CCCAGC	1 cut(s)	116
PspPI	GGNCC	2 cut(s)	46, 275
PvuII	CAGCTG	1 cut(s)	289
RsaI	GTAC	2 cut(s)	236, 293
RsaNI	GTAC	2 cut(s)	235, 292
RseI	CAYNNNNRTG	1 cut(s)	151
SacI	GAGCTC	1 cut(s)	338
SaqAI	TTAA	2 cut(s)	312, 412
SatI	GCNGC	2 cut(s)	143, 287
Sau3AI	GATC	1 cut(s)	301
Sau96I	GGNCC	2 cut(s)	46, 275
SchI	GAGTC	1 cut(s)	357
ScrFI	CCNGG	2 cut(s)	282, 283
SduI	GDGCHC	2 cut(s)	322, 338
SetI	ASST	5 cut(s)	29, 67, 163, 291, 338
SgrAI	CRCCGGYG	1 cut(s)	166
SinI	GGWCC	1 cut(s)	275
SmaI	CCCGGG	1 cut(s)	283
SmiMI	CAYNNNNRTG	1 cut(s)	151
Sse9I	AATT	1 cut(s)	351
SsiI	CCGC	5 cut(s)	99, 128, 140, 143, 248
SstI	GAGCTC	1 cut(s)	338
StyD4I	CCNGG	2 cut(s)	280, 281
TaaI	ACNGT	2 cut(s)	153, 225
TaqII	GACCGA	1 cut(s)	328
TasI	AATT	1 cut(s)	351
TauI	GCSGC	1 cut(s)	145
TfiI	GAWTC	1 cut(s)	214
Tru1I	TTAA	2 cut(s)	312, 412
Tru9I	TTAA	2 cut(s)	312, 412
TscAI	CASTG	2 cut(s)	14, 94
TseI	GCWGC	1 cut(s)	286
TspDTI	ATGAA	1 cut(s)	93
TspMI	CCCGGG	1 cut(s)	281
TspRI	CASTG	2 cut(s)	14, 94
VpaK11BI	GGWCC	1 cut(s)	275
XmaI	CCCGGG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.