Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007800

Physical Location & Seq

Genomic Coordinates Reverse (-)

50598227 .. 50598894

Gene Structure 668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0331800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAGTGGAGAGCACACTGTTATAGGGCTCCACAACAGACGTAGAAACCTGAGGAGAAGGATACACAATGAATCCGAGCTTGGACTTTTTCCCATAGTCCACAGAAAGCCTCTCCAGCAAAAGCGACCCGAGACCCGACCCGGTACCGCCAACGACGGCATTGAAGACAAGGAATCCCTGGAGCCCGGTGCAGTTATCAGCGAGGTTCCAGATCCGATCCAGGCAGAGATCGACGATCTCTTTGCCGATGGTGTAGTGACCACGGGCGAAGTTGTTAGCGGCGTCCTCCTTGCTGGAGATGAGCTACTCGGGGTGGAAGAGCTGGTGGTAGGTTCCGGTGCAGACCTCGTCGATGACGGTGGGCTCGAGGTGGACGAAGATGGCGTGTGGGACGTGCTTGCCAGTGCCGGTCTCGGAGAAGAAGGTGTTGAAGGCGTCACCGCAGCGGCCGACGGTCTTGTCGCTCGGCATCTGGCCGTCCGGCTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTCTGAGAGGAGTCGAGGAAGAGAGTCTGAGAGGAGTGTAGTTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

20.41

Weight (kDa)

4.65

Isoelectric Point (pI)

53.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02405 AT1G23040 AT1G23040 AT1G23040 AT1G70990
fragaria_vesca	FvH4_4g32400
malus_domestica	MD13G1025500.v1.1
prunus_persica	Prupe.1G324400_v2.0.a1
pyrus_communis	pycom13g02420
rosa_chinensis	RchiOBHm_Chr4g0441241 RchiOBHm_Chr4g0441251
rosa_laevigata	RLG00000006107 RLG00000006108
rosa_multiflora	Rmu_sc0012909.1_g000011
rosa_roxburghii	Rroxscaffold_5G00382150
rosa_rugosa	Rorug04G0331800
rosa_samantha	Rh4AG383600 Rh4AG383700 Rh4BG397700 Rh4CG412900 Rh4DG390400 Rh4DG390500
rosa_wichuraiana	Rw4G033100 Rw4G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	458
Acc65I	GGTACC	1 cut(s)	143
AccB1I	GGYRCC	1 cut(s)	143
AciI	CCGC	4 cut(s)	147, 279, 441, 446
AclWI	GGATC	2 cut(s)	206, 211
AcoI	YGGCCR	2 cut(s)	447, 474
AcyI	GRCGYC	2 cut(s)	282, 435
AfaI	GTAC	1 cut(s)	145
AgsI	TTSAA	2 cut(s)	164, 431
AjiI	CACGTC	1 cut(s)	394
AjnI	CCWGG	2 cut(s)	177, 219
AjuI	GAANNNNNNNTTGG	2 cut(s)	63, 95
AluBI	AGCT	3 cut(s)	79, 304, 322
AluI	AGCT	3 cut(s)	79, 304, 322
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	2 cut(s)	125, 416
AlwI	GGATC	2 cut(s)	206, 211
Ama87I	CYCGRG	3 cut(s)	128, 308, 365
AoxI	GGCC	2 cut(s)	447, 474
ApeKI	GCWGC	1 cut(s)	443
ArsI	GACNNNNNNTTYG	2 cut(s)	224, 256
Asp718I	GGTACC	1 cut(s)	143
AsuC2I	CCSGG	2 cut(s)	141, 186
AsuHPI	GGTGA	1 cut(s)	430
AvaI	CYCGRG	3 cut(s)	128, 308, 365
AxyI	CCTNAGG	1 cut(s)	50
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	3 cut(s)	30, 186, 366
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	455
BccI	CCATC	2 cut(s)	242, 374
BceAI	ACGGC	2 cut(s)	172, 461
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BciT130I	CCWGG	2 cut(s)	179, 221
BciVI	GTATCC	1 cut(s)	54
BcnI	CCSGG	2 cut(s)	141, 186
BcoDI	GTCTC	2 cut(s)	125, 416
BfuI	GTATCC	1 cut(s)	54
BisI	GCNGC	3 cut(s)	280, 444, 447
BlsI	GCNGC	3 cut(s)	281, 445, 448
Bme1390I	CCNGG	4 cut(s)	141, 179, 186, 221
BmeT110I	CYCGRG	3 cut(s)	128, 308, 365
BmgBI	CACGTC	1 cut(s)	394
BmiI	GGNNCC	5 cut(s)	29, 145, 183, 207, 334
BmrFI	CCNGG	4 cut(s)	141, 179, 186, 221
BmsI	GCATC	1 cut(s)	478
BpiI	GAAGAC	1 cut(s)	171
BpmI	CTGGAG	4 cut(s)	98, 200, 315, 506
BpuMI	CCSGG	2 cut(s)	141, 186
BsaHI	GRCGYC	2 cut(s)	282, 435
BsaI	GGTCTC	2 cut(s)	125, 416
BsaJI	CCNNGG	2 cut(s)	177, 261
BsaWI	WCCGGW	1 cut(s)	335
Bse118I	RCCGGY	1 cut(s)	407
Bse1I	ACTGG	1 cut(s)	402
Bse21I	CCTNAGG	1 cut(s)	50
BseBI	CCWGG	2 cut(s)	179, 221
BseDI	CCNNGG	2 cut(s)	177, 261
BseMII	CTCAG	3 cut(s)	41, 513, 537
BseNI	ACTGG	1 cut(s)	402
BseRI	GAGGAG	3 cut(s)	67, 541, 565
BseX3I	CGGCCG	1 cut(s)	447
BseXI	GCAGC	1 cut(s)	455
BsgI	GTGCAG	2 cut(s)	210, 360
Bsh1285I	CGRYCG	1 cut(s)	450
BshFI	GGCC	2 cut(s)	449, 476
BshNI	GGYRCC	1 cut(s)	143
BsiEI	CGRYCG	1 cut(s)	450
BsiHKAI	GWGCWC	1 cut(s)	15
BsiHKCI	CYCGRG	3 cut(s)	128, 308, 365
BsiSI	CCGG	5 cut(s)	141, 186, 336, 408, 481
BslFI	GGGAC	1 cut(s)	404
BsmAI	GTCTC	2 cut(s)	125, 416
BsmFI	GGGAC	1 cut(s)	404
BsnI	GGCC	2 cut(s)	449, 476
Bso31I	GGTCTC	2 cut(s)	125, 416
BsoBI	CYCGRG	3 cut(s)	128, 308, 365
Bsp1286I	GDGCHC	4 cut(s)	15, 30, 186, 366
Bsp143I	GATC	4 cut(s)	211, 216, 228, 235
BspACI	CCGC	4 cut(s)	147, 279, 441, 446
BspANI	GGCC	2 cut(s)	449, 476
BspCNI	CTCAG	3 cut(s)	42, 514, 538
BspLI	GGNNCC	5 cut(s)	29, 145, 183, 207, 334
BspPI	GGATC	2 cut(s)	206, 211
BspQI	GCTCTTC	1 cut(s)	312
BspT107I	GGYRCC	1 cut(s)	143
BspTNI	GGTCTC	2 cut(s)	125, 416
BsrFI	RCCGGY	1 cut(s)	407
BsrI	ACTGG	1 cut(s)	402
BssAI	RCCGGY	1 cut(s)	407
BssECI	CCNNGG	2 cut(s)	177, 261
BssMI	GATC	4 cut(s)	211, 216, 228, 235
BssNI	GRCGYC	2 cut(s)	282, 435
Bst2UI	CCWGG	2 cut(s)	179, 221
Bst4CI	ACNGT	3 cut(s)	19, 359, 455
Bst6I	CTCTTC	2 cut(s)	312, 532
BstACI	GRCGYC	2 cut(s)	282, 435
BstC8I	GCNNGC	1 cut(s)	399
BstDEI	CTNAG	3 cut(s)	50, 522, 546
BstDSI	CCRYGG	1 cut(s)	261
BstKTI	GATC	4 cut(s)	214, 219, 231, 238
BstMAI	GTCTC	2 cut(s)	125, 416
BstMBI	GATC	4 cut(s)	211, 216, 228, 235
BstMCI	CGRYCG	1 cut(s)	450
BstMWI	GCNNNNNNNGC	1 cut(s)	115
BstNI	CCWGG	2 cut(s)	179, 221
BstSCI	CCNGG	4 cut(s)	139, 177, 184, 219
BstV1I	GCAGC	1 cut(s)	455
BstV2I	GAAGAC	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BstZI	CGGCCG	1 cut(s)	447
Bsu36I	CCTNAGG	1 cut(s)	50
BsuI	GTATCC	1 cut(s)	54
BsuRI	GGCC	2 cut(s)	449, 476
BtgI	CCRYGG	1 cut(s)	261
BtrI	CACGTC	1 cut(s)	394
BtsIMutI	CAGTG	2 cut(s)	15, 409
Cac8I	GCNNGC	1 cut(s)	399
Cfr10I	RCCGGY	1 cut(s)	407
CseI	GACGC	2 cut(s)	271, 424
Csp6I	GTAC	1 cut(s)	144
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	3 cut(s)	50, 522, 546
DpnI	GATC	4 cut(s)	213, 218, 230, 237
DpnII	GATC	4 cut(s)	211, 216, 228, 235
DrdI	GACNNNNNNGTC	1 cut(s)	458
DseDI	GACNNNNNNGTC	1 cut(s)	458
EaeI	YGGCCR	2 cut(s)	447, 474
EagI	CGGCCG	1 cut(s)	447
Eam1104I	CTCTTC	2 cut(s)	312, 532
EarI	CTCTTC	2 cut(s)	312, 532
EclXI	CGGCCG	1 cut(s)	447
Eco24I	GRGCYC	3 cut(s)	30, 186, 366
Eco31I	GGTCTC	2 cut(s)	125, 416
Eco52I	CGGCCG	1 cut(s)	447
Eco81I	CCTNAGG	1 cut(s)	50
Eco88I	CYCGRG	3 cut(s)	128, 308, 365
EcoRII	CCWGG	2 cut(s)	177, 219
EcoT38I	GRGCYC	3 cut(s)	30, 186, 366
FaiI	YATR	2 cut(s)	23, 95
FaqI	GGGAC	1 cut(s)	404
Fnu4HI	GCNGC	3 cut(s)	280, 444, 447
FriOI	GRGCYC	3 cut(s)	30, 186, 366
Fsp4HI	GCNGC	3 cut(s)	280, 444, 447
GluI	GCNGC	3 cut(s)	280, 444, 447
GsuI	CTGGAG	4 cut(s)	98, 200, 315, 506
HaeIII	GGCC	2 cut(s)	449, 476
HapII	CCGG	5 cut(s)	141, 186, 336, 408, 481
HgaI	GACGC	2 cut(s)	271, 424
Hin1I	GRCGYC	2 cut(s)	282, 435
HinfI	GANTC	5 cut(s)	71, 173, 518, 529, 542
HpaII	CCGG	5 cut(s)	141, 186, 336, 408, 481
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	2 cut(s)	100, 373
Hpy188I	TCNGA	5 cut(s)	76, 216, 416, 523, 547
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	2 cut(s)	100, 373
Hpy99I	CGWCG	4 cut(s)	158, 236, 353, 455
HpyAV	CCTTC	3 cut(s)	51, 416, 425
HpyCH4III	ACNGT	3 cut(s)	19, 359, 455
HpyCH4IV	ACGT	2 cut(s)	40, 393
HpyCH4V	TGCA	2 cut(s)	191, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	115
HpyF3I	CTNAG	3 cut(s)	50, 522, 546
HpySE526I	ACGT	2 cut(s)	40, 393
Hsp92I	GRCGYC	2 cut(s)	282, 435
KpnI	GGTACC	1 cut(s)	147
Kzo9I	GATC	4 cut(s)	211, 216, 228, 235
LguI	GCTCTTC	1 cut(s)	312
LmnI	GCTCC	2 cut(s)	33, 181
Lsp1109I	GCAGC	1 cut(s)	455
LweI	GCATC	1 cut(s)	478
MaeII	ACGT	2 cut(s)	40, 393
MaeIII	GTNAC	2 cut(s)	256, 436
MalI	GATC	4 cut(s)	213, 218, 230, 237
MboI	GATC	4 cut(s)	211, 216, 228, 235
MboII	GAAGA	5 cut(s)	176, 329, 389, 431, 549
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	4 cut(s)	15, 30, 186, 366
MlyI	GAGTC	3 cut(s)	527, 538, 551
MnlI	CCTC	9 cut(s)	45, 120, 196, 296, 356, 361, 519, 527, 543
MseI	TTAA	1 cut(s)	565
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	5 cut(s)	141, 186, 336, 408, 481
MspR9I	CCNGG	4 cut(s)	141, 179, 186, 221
MvaI	CCWGG	2 cut(s)	179, 221
MwoI	GCNNNNNNNGC	1 cut(s)	115
NciI	CCSGG	2 cut(s)	141, 186
NdeII	GATC	4 cut(s)	211, 216, 228, 235
NlaIV	GGNNCC	5 cut(s)	29, 145, 183, 207, 334
NmeAIII	GCCGAG	1 cut(s)	445
NmuCI	GTSAC	2 cut(s)	256, 436
PaeR7I	CTCGAG	1 cut(s)	365
PciSI	GCTCTTC	1 cut(s)	312
PcsI	WCGNNNNNNNCGW	3 cut(s)	363, 372, 381
PfeI	GAWTC	2 cut(s)	71, 173
PflFI	GACNNNGTC	1 cut(s)	347
PkrI	GCNGC	3 cut(s)	281, 445, 448
PleI	GAGTC	3 cut(s)	526, 537, 550
PpsI	GAGTC	3 cut(s)	526, 537, 550
Psp6I	CCWGG	2 cut(s)	177, 219
PspGI	CCWGG	2 cut(s)	177, 219
PspN4I	GGNNCC	5 cut(s)	29, 145, 183, 207, 334
PspXI	VCTCGAGB	1 cut(s)	365
PsuI	RGATCY	1 cut(s)	211
PsyI	GACNNNGTC	1 cut(s)	347
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SapI	GCTCTTC	1 cut(s)	312
SaqAI	TTAA	1 cut(s)	565
SatI	GCNGC	3 cut(s)	280, 444, 447
Sau3AI	GATC	4 cut(s)	211, 216, 228, 235
SchI	GAGTC	3 cut(s)	527, 538, 551
ScrFI	CCNGG	4 cut(s)	141, 179, 186, 221
SduI	GDGCHC	4 cut(s)	15, 30, 186, 366
SfaNI	GCATC	1 cut(s)	478
Sfr274I	CTCGAG	1 cut(s)	365
SlaI	CTCGAG	1 cut(s)	365
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
SsiI	CCGC	4 cut(s)	147, 279, 441, 446
StyD4I	CCNGG	4 cut(s)	139, 177, 184, 219
TaaI	ACNGT	3 cut(s)	19, 359, 455
TaiI	ACGT	2 cut(s)	43, 396
TaqI	TCGA	4 cut(s)	231, 351, 366, 532
TauI	GCSGC	2 cut(s)	282, 449
TfiI	GAWTC	2 cut(s)	71, 173
Tru1I	TTAA	1 cut(s)	565
Tru9I	TTAA	1 cut(s)	565
TscAI	CASTG	2 cut(s)	22, 409
TseFI	GTSAC	2 cut(s)	256, 436
TseI	GCWGC	1 cut(s)	443
Tsp45I	GTSAC	2 cut(s)	256, 436
TspDTI	ATGAA	1 cut(s)	84
TspRI	CASTG	2 cut(s)	22, 409
Tth111I	GACNNNGTC	1 cut(s)	347
XhoI	CTCGAG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.