Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007800

Physical Location & Seq

Genomic Coordinates Forward (+)

8164782 .. 8166716

Gene Structure 1935 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G23040.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCCGGGAAATTCTCACCGCCGGGGATCCGACGTCATATTCACCGTGATGATGATCGCCTTGCTGACGTGTCCAACACTCATCAACGGTTCATCATCATCAGATGCTTCTTTAGAAGCAAGAAAGCTCGATGAGGTCGATCCCATAAAGTGCTCTCCAAGCTGCATCCAAAACCCTCCTCCGCCATCTCCTCCACCACCGTCTCCGCCACCACCTGCATGTCCTCCACCCCCGGCTCTTCCACCGCCTCCGCCTAAGAAAGTCAGTTCCTACTGCCCACCGCCTCCGCCGGCTAATTTCTTGTACATCACGGGTCCGCCGGGAAATCTCTACCCCGTTGATGAGCAATTCGGAGCGGCCGCCGGAAAAAGTTTTATGGTGGTGAAGCTCTCCGGTCTAATCGCGTTTGGAATTATGGCGTTCCTGATTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

15.01

Weight (kDa)

7.6

Isoelectric Point (pI)

72.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02405 AT1G23040 AT1G23040 AT1G23040 AT1G70990
fragaria_vesca	FvH4_4g32400
malus_domestica	MD13G1025500.v1.1
prunus_persica	Prupe.1G324400_v2.0.a1
pyrus_communis	pycom13g02420
rosa_chinensis	RchiOBHm_Chr4g0441241 RchiOBHm_Chr4g0441251
rosa_laevigata	RLG00000006107 RLG00000006108
rosa_multiflora	Rmu_sc0012909.1_g000011
rosa_roxburghii	Rroxscaffold_5G00382150
rosa_rugosa	Rorug04G0331800
rosa_samantha	Rh4AG383600 Rh4AG383700 Rh4BG397700 Rh4CG412900 Rh4DG390400 Rh4DG390500
rosa_wichuraiana	Rw4G033100 Rw4G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	223
AatII	GACGTC	1 cut(s)	36
Acc36I	ACCTGC	1 cut(s)	223
AccBSI	CCGCTC	1 cut(s)	356
AccII	CGCG	1 cut(s)	404
AclWI	GGATC	3 cut(s)	21, 34, 134
AcoI	YGGCCR	1 cut(s)	357
AcsI	RAATTY	1 cut(s)	10
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	1 cut(s)	305
AflIII	ACRYGT	1 cut(s)	68
AjiI	CACGTC	1 cut(s)	69
AluBI	AGCT	3 cut(s)	127, 162, 388
AluI	AGCT	3 cut(s)	127, 162, 388
Alw21I	GWGCWC	1 cut(s)	155
Alw26I	GTCTC	1 cut(s)	207
AlwI	GGATC	3 cut(s)	21, 34, 134
AoxI	GGCC	1 cut(s)	357
ApeKI	GCWGC	1 cut(s)	162
ApoI	RAATTY	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	314
AsuC2I	CCSGG	4 cut(s)	6, 23, 233, 321
AsuHPI	GGTGA	3 cut(s)	8, 34, 394
AvaII	GGWCC	1 cut(s)	314
BamHI	GGATCC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	155
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	1 cut(s)	193
BcnI	CCSGG	4 cut(s)	6, 23, 233, 321
BcoDI	GTCTC	1 cut(s)	207
BfuAI	ACCTGC	1 cut(s)	223
BisI	GCNGC	3 cut(s)	163, 357, 360
BlsI	GCNGC	3 cut(s)	164, 358, 361
Bme1390I	CCNGG	4 cut(s)	6, 23, 233, 321
Bme18I	GGWCC	1 cut(s)	314
BmgBI	CACGTC	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	2 cut(s)	28, 315
BmrFI	CCNGG	4 cut(s)	6, 23, 233, 321
BmsI	GCATC	2 cut(s)	94, 174
BpuMI	CCSGG	4 cut(s)	6, 23, 233, 321
BsaBI	GATNNNNATC	1 cut(s)	53
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	22, 231
BsaWI	WCCGGW	1 cut(s)	392
Bse118I	RCCGGY	1 cut(s)	289
Bse8I	GATNNNNATC	1 cut(s)	53
BseDI	CCNNGG	2 cut(s)	22, 231
BseGI	GGATG	1 cut(s)	165
BseJI	GATNNNNATC	1 cut(s)	53
BseRI	GAGGAG	2 cut(s)	168, 180
BseX3I	CGGCCG	1 cut(s)	357
BseXI	GCAGC	1 cut(s)	149
Bsh1236I	CGCG	1 cut(s)	404
Bsh1285I	CGRYCG	1 cut(s)	360
BshFI	GGCC	1 cut(s)	359
BsiEI	CGRYCG	1 cut(s)	360
BsiHKAI	GWGCWC	1 cut(s)	155
BsiSI	CCGG	7 cut(s)	5, 22, 233, 290, 320, 363, 393
BsmAI	GTCTC	1 cut(s)	207
BsmBI	CGTCTC	1 cut(s)	207
BsnI	GGCC	1 cut(s)	359
Bsp1286I	GDGCHC	1 cut(s)	155
Bsp1407I	TGTACA	1 cut(s)	303
Bsp143I	GATC	3 cut(s)	26, 54, 139
BspANI	GGCC	1 cut(s)	359
BspFNI	CGCG	1 cut(s)	404
BspLI	GGNNCC	2 cut(s)	28, 315
BspMI	ACCTGC	1 cut(s)	223
BspPI	GGATC	3 cut(s)	21, 34, 134
BspQI	GCTCTTC	1 cut(s)	243
BsrBI	CCGCTC	1 cut(s)	356
BsrFI	RCCGGY	1 cut(s)	289
BsrGI	TGTACA	1 cut(s)	303
BssAI	RCCGGY	1 cut(s)	289
BssECI	CCNNGG	2 cut(s)	22, 231
BssMI	GATC	3 cut(s)	26, 54, 139
BssNI	GRCGYC	1 cut(s)	33
Bst4CI	ACNGT	3 cut(s)	46, 89, 201
Bst6I	CTCTTC	1 cut(s)	243
BstACI	GRCGYC	1 cut(s)	33
BstAUI	TGTACA	1 cut(s)	303
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	1 cut(s)	255
BstF5I	GGATG	1 cut(s)	165
BstFNI	CGCG	1 cut(s)	404
BstKTI	GATC	3 cut(s)	29, 57, 142
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	3 cut(s)	26, 54, 139
BstMCI	CGRYCG	1 cut(s)	360
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstNSI	RCATGY	1 cut(s)	222
BstSCI	CCNGG	4 cut(s)	4, 21, 231, 319
BstUI	CGCG	1 cut(s)	404
BstV1I	GCAGC	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	26
BstZI	CGGCCG	1 cut(s)	357
BsuRI	GGCC	1 cut(s)	359
BtrI	CACGTC	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	165
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	291
CciNI	GCGGCCGC	1 cut(s)	357
Cfr10I	RCCGGY	1 cut(s)	289
Cfr13I	GGNCC	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	1 cut(s)	219
CviJI	RGCY	6 cut(s)	127, 162, 236, 293, 359, 388
CviKI_1	RGCY	6 cut(s)	127, 162, 236, 293, 359, 388
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	3 cut(s)	28, 56, 141
DpnII	GATC	3 cut(s)	26, 54, 139
EaeI	YGGCCR	1 cut(s)	357
EagI	CGGCCG	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
EciI	GGCGGA	5 cut(s)	171, 195, 240, 276, 306
EclXI	CGGCCG	1 cut(s)	357
Eco47I	GGWCC	1 cut(s)	314
Eco52I	CGGCCG	1 cut(s)	357
Esp3I	CGTCTC	1 cut(s)	207
FaeI	CATG	1 cut(s)	222
FaiI	YATR	5 cut(s)	38, 146, 220, 377, 416
FatI	CATG	1 cut(s)	218
Fnu4HI	GCNGC	3 cut(s)	163, 357, 360
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	3 cut(s)	163, 357, 360
GluI	GCNGC	3 cut(s)	163, 357, 360
HaeIII	GGCC	1 cut(s)	359
HapII	CCGG	7 cut(s)	5, 22, 233, 290, 320, 363, 393
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	1 cut(s)	222
HinfI	GANTC	1 cut(s)	427
HpaII	CCGG	7 cut(s)	5, 22, 233, 290, 320, 363, 393
HphI	GGTGA	3 cut(s)	8, 34, 394
Hpy188I	TCNGA	3 cut(s)	31, 103, 353
Hpy188III	TCNNGA	1 cut(s)	424
Hpy99I	CGWCG	1 cut(s)	35
HpyCH4III	ACNGT	3 cut(s)	46, 89, 201
HpyCH4IV	ACGT	2 cut(s)	33, 68
HpyCH4V	TGCA	2 cut(s)	165, 218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	2 cut(s)	33, 68
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	222
KroI	GCCGGC	1 cut(s)	289
KroNI	GCCGGC	1 cut(s)	291
Kzo9I	GATC	3 cut(s)	26, 54, 139
LguI	GCTCTTC	1 cut(s)	243
LmnI	GCTCC	1 cut(s)	353
LpnPI	CCDG	8 cut(s)	18, 35, 228, 246, 303, 333, 376, 406
Lsp1109I	GCAGC	1 cut(s)	149
LweI	GCATC	2 cut(s)	94, 174
MaeII	ACGT	2 cut(s)	33, 68
MalI	GATC	3 cut(s)	28, 56, 141
MbiI	CCGCTC	1 cut(s)	356
MboI	GATC	3 cut(s)	26, 54, 139
MboII	GAAGA	1 cut(s)	230
MflI	RGATCY	1 cut(s)	26
MhlI	GDGCHC	1 cut(s)	155
MluCI	AATT	4 cut(s)	10, 295, 347, 411
MmeI	TCCRAC	2 cut(s)	54, 98
MnlI	CCTC	7 cut(s)	127, 186, 189, 201, 234, 258, 294
MroNI	GCCGGC	1 cut(s)	289
MslI	CAYNNNNRTG	2 cut(s)	47, 217
MspI	CCGG	7 cut(s)	5, 22, 233, 290, 320, 363, 393
MspR9I	CCNGG	4 cut(s)	6, 23, 233, 321
MvnI	CGCG	1 cut(s)	404
MwoI	GCNNNNNNNGC	1 cut(s)	159
NaeI	GCCGGC	1 cut(s)	291
NciI	CCSGG	4 cut(s)	6, 23, 233, 321
NdeII	GATC	3 cut(s)	26, 54, 139
NgoMIV	GCCGGC	1 cut(s)	289
NlaIII	CATG	1 cut(s)	222
NlaIV	GGNNCC	2 cut(s)	28, 315
NotI	GCGGCCGC	1 cut(s)	357
NspI	RCATGY	1 cut(s)	222
PaqCI	CACCTGC	1 cut(s)	223
PciSI	GCTCTTC	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PdiI	GCCGGC	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	427
PkrI	GCNGC	3 cut(s)	164, 358, 361
PspN4I	GGNNCC	2 cut(s)	28, 315
PspPI	GGNCC	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	26
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
RseI	CAYNNNNRTG	2 cut(s)	47, 217
SapI	GCTCTTC	1 cut(s)	243
SatI	GCNGC	3 cut(s)	163, 357, 360
Sau3AI	GATC	3 cut(s)	26, 54, 139
Sau96I	GGNCC	1 cut(s)	314
ScrFI	CCNGG	4 cut(s)	6, 23, 233, 321
SduI	GDGCHC	1 cut(s)	155
SetI	ASST	7 cut(s)	36, 71, 129, 138, 164, 217, 390
SfaNI	GCATC	2 cut(s)	94, 174
SinI	GGWCC	1 cut(s)	314
SmiMI	CAYNNNNRTG	2 cut(s)	47, 217
Sse9I	AATT	4 cut(s)	10, 295, 347, 411
StyD4I	CCNGG	4 cut(s)	4, 21, 231, 319
TaaI	ACNGT	3 cut(s)	46, 89, 201
TaiI	ACGT	2 cut(s)	36, 71
TaqI	TCGA	2 cut(s)	129, 138
TasI	AATT	4 cut(s)	10, 295, 347, 411
TatI	WGTACW	1 cut(s)	303
TauI	GCSGC	2 cut(s)	359, 362
TfiI	GAWTC	1 cut(s)	427
TseI	GCWGC	1 cut(s)	162
TspDTI	ATGAA	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	314
XapI	RAATTY	1 cut(s)	10
XceI	RCATGY	1 cut(s)	222
ZraI	GACGTC	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.