Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0007800

Physical Location & Seq

Genomic Coordinates Forward (+)

60219264 .. 60220208

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G033110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGATGCACTGCTTCAAGATTCTCAGCTTGTTCCTTGTTGCTGTGGCCCTTTTAGGAGGAGGAGCTTCCGTCCACGCCCAAGACGGCGGAGATAAGTGCGGTGCATGCACCACTCCAAGCCCCCCGCCGCCGTCTCCTCCTCCGCCATCACCGTCTCCTCCTCCGCCATCATCGTCCCCTCCTCCACCACCAACACCGGTTCATCCCCCTCCTTCCCCCAAGAAGCCTCCACCGTCCACTCCGTACTGCCCTCCGCCACCGTCGTCGTTGGTTTACATCACCGGTCCTCCCGGGGAGCTGTACCCTGTTGATCATTTCTATAATGGTGCTGATGGAGTGAGGAGCTCGGTCGGGTTACCGGTTCTGCTCGGACTCGGATTGCTGGGTGTTCTGGCGTTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

13.58

Weight (kDa)

6.87

Isoelectric Point (pI)

95.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02405 AT1G23040 AT1G23040 AT1G23040 AT1G70990
fragaria_vesca	FvH4_4g32400
malus_domestica	MD13G1025500.v1.1
prunus_persica	Prupe.1G324400_v2.0.a1
pyrus_communis	pycom13g02420
rosa_chinensis	RchiOBHm_Chr4g0441241 RchiOBHm_Chr4g0441251
rosa_laevigata	RLG00000006107 RLG00000006108
rosa_multiflora	Rmu_sc0012909.1_g000011
rosa_roxburghii	Rroxscaffold_5G00382150
rosa_rugosa	Rorug04G0331800
rosa_samantha	Rh4AG383600 Rh4AG383700 Rh4BG397700 Rh4CG412900 Rh4DG390400 Rh4DG390500
rosa_wichuraiana	Rw4G033100 Rw4G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	87, 99, 125, 128, 143, 164, 254
AfaI	GTAC	2 cut(s)	245, 302
AgeI	ACCGGT	3 cut(s)	196, 281, 358
AgsI	TTSAA	1 cut(s)	16
AluBI	AGCT	4 cut(s)	27, 65, 298, 345
AluI	AGCT	4 cut(s)	27, 65, 298, 345
Alw21I	GWGCWC	1 cut(s)	347
Alw26I	GTCTC	2 cut(s)	138, 159
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	1 cut(s)	45
AsiGI	ACCGGT	3 cut(s)	196, 281, 358
AspS9I	GGNCC	2 cut(s)	46, 284
AsuC2I	CCSGG	2 cut(s)	291, 292
AsuHPI	GGTGA	2 cut(s)	141, 271
AvaI	CYCGRG	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	347
Bbv12I	GWGCWC	1 cut(s)	347
BccI	CCATC	3 cut(s)	154, 175, 326
BceAI	ACGGC	2 cut(s)	100, 115
BclI	TGATCA	1 cut(s)	310
BcnI	CCSGG	2 cut(s)	291, 292
BcoDI	GTCTC	2 cut(s)	138, 159
BisI	GCNGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	129
Bme1390I	CCNGG	2 cut(s)	291, 292
Bme18I	GGWCC	1 cut(s)	284
BmeT110I	CYCGRG	1 cut(s)	290
BmgT120I	GGNCC	2 cut(s)	46, 284
BmrFI	CCNGG	2 cut(s)	291, 292
BpuMI	CCSGG	2 cut(s)	291, 292
BsaJI	CCNNGG	2 cut(s)	290, 291
BsaWI	WCCGGW	3 cut(s)	196, 281, 358
BsaXI	ACNNNNNCTCC	4 cut(s)	54, 84, 271, 301
Bse118I	RCCGGY	3 cut(s)	196, 281, 358
BseDI	CCNNGG	2 cut(s)	290, 291
BseGI	GGATG	1 cut(s)	202
BseMII	CTCAG	1 cut(s)	37
BseRI	GAGGAG	8 cut(s)	72, 75, 126, 129, 147, 150, 171, 355
BseYI	CCCAGC	1 cut(s)	382
Bsh1285I	CGRYCG	1 cut(s)	351
BshFI	GGCC	1 cut(s)	47
BshTI	ACCGGT	3 cut(s)	196, 281, 358
BsiEI	CGRYCG	1 cut(s)	351
BsiHKAI	GWGCWC	1 cut(s)	347
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	4 cut(s)	197, 282, 291, 359
BslFI	GGGAC	1 cut(s)	160
BsmAI	GTCTC	2 cut(s)	138, 159
BsmBI	CGTCTC	2 cut(s)	138, 159
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	47
BsoBI	CYCGRG	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	347
Bsp143I	GATC	1 cut(s)	310
BspACI	CCGC	7 cut(s)	87, 99, 125, 128, 143, 164, 254
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	36
BsrFI	RCCGGY	3 cut(s)	196, 281, 358
BssAI	RCCGGY	3 cut(s)	196, 281, 358
BssECI	CCNNGG	2 cut(s)	290, 291
BssMI	GATC	1 cut(s)	310
Bst4CI	ACNGT	3 cut(s)	153, 234, 261
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	1 cut(s)	23
BstEII	GGTNACC	1 cut(s)	354
BstF5I	GGATG	1 cut(s)	202
BstKTI	GATC	1 cut(s)	313
BstMAI	GTCTC	2 cut(s)	138, 159
BstMBI	GATC	1 cut(s)	310
BstMCI	CGRYCG	1 cut(s)	351
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNSI	RCATGY	1 cut(s)	108
BstPI	GGTNACC	1 cut(s)	354
BstSCI	CCNGG	2 cut(s)	289, 290
BsuRI	GGCC	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	202
BtsI	GCAGTG	1 cut(s)	7
BtsIMutI	CAGTG	1 cut(s)	7
Cac8I	GCNNGC	1 cut(s)	106
Cfr10I	RCCGGY	3 cut(s)	196, 281, 358
Cfr13I	GGNCC	2 cut(s)	46, 284
Cfr9I	CCCGGG	1 cut(s)	290
Csp6I	GTAC	2 cut(s)	244, 301
CspAI	ACCGGT	3 cut(s)	196, 281, 358
CviAII	CATG	1 cut(s)	105
CviJI	RGCY	7 cut(s)	27, 47, 65, 120, 226, 298, 345
CviKI_1	RGCY	7 cut(s)	27, 47, 65, 120, 226, 298, 345
CviQI	GTAC	2 cut(s)	244, 301
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
EciI	GGCGGA	4 cut(s)	102, 132, 153, 243
Ecl136II	GAGCTC	1 cut(s)	345
Eco24I	GRGCYC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	284
Eco53kI	GAGCTC	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	290
Eco91I	GGTNACC	1 cut(s)	354
EcoICRI	GAGCTC	1 cut(s)	345
EcoO65I	GGTNACC	1 cut(s)	354
EcoT38I	GRGCYC	1 cut(s)	347
Esp3I	CGTCTC	2 cut(s)	138, 159
FaeI	CATG	1 cut(s)	108
FaiI	YATR	2 cut(s)	106, 321
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	1 cut(s)	104
FauI	CCCGC	1 cut(s)	132
FbaI	TGATCA	1 cut(s)	310
Fnu4HI	GCNGC	1 cut(s)	128
FokI	GGATG	1 cut(s)	189
FriOI	GRGCYC	1 cut(s)	347
Fsp4HI	GCNGC	1 cut(s)	128
GluI	GCNGC	1 cut(s)	128
GsaI	CCCAGC	1 cut(s)	386
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	4 cut(s)	197, 282, 291, 359
Hin1II	CATG	1 cut(s)	108
HinfI	GANTC	2 cut(s)	19, 372
HpaII	CCGG	4 cut(s)	197, 282, 291, 359
HphI	GGTGA	2 cut(s)	141, 271
Hpy166II	GTNNAC	3 cut(s)	73, 237, 274
Hpy188I	TCNGA	2 cut(s)	371, 377
Hpy188III	TCNNGA	1 cut(s)	16
Hpy8I	GTNNAC	3 cut(s)	73, 237, 274
Hpy99I	CGWCG	2 cut(s)	265, 268
HpyAV	CCTTC	1 cut(s)	222
HpyCH4III	ACNGT	3 cut(s)	153, 234, 261
HpyCH4V	TGCA	3 cut(s)	7, 104, 108
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	1 cut(s)	23
Hsp92II	CATG	1 cut(s)	108
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	1 cut(s)	310
LmnI	GCTCC	3 cut(s)	62, 295, 342
LpnPI	CCDG	7 cut(s)	210, 295, 304, 318, 368, 372, 377
MaeIII	GTNAC	1 cut(s)	354
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MhlI	GDGCHC	1 cut(s)	347
MlyI	GAGTC	1 cut(s)	366
MspI	CCGG	4 cut(s)	197, 282, 291, 359
MspR9I	CCNGG	2 cut(s)	291, 292
MwoI	GCNNNNNNNGC	1 cut(s)	105
NciI	CCSGG	2 cut(s)	291, 292
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	1 cut(s)	108
NspI	RCATGY	1 cut(s)	108
PaeI	GCATGC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	19
PinAI	ACCGGT	3 cut(s)	196, 281, 358
PkrI	GCNGC	1 cut(s)	129
PleI	GAGTC	1 cut(s)	366
PpsI	GAGTC	1 cut(s)	366
Psp124BI	GAGCTC	1 cut(s)	347
PspEI	GGTNACC	1 cut(s)	354
PspFI	CCCAGC	1 cut(s)	382
PspPI	GGNCC	2 cut(s)	46, 284
RsaI	GTAC	2 cut(s)	245, 302
RsaNI	GTAC	2 cut(s)	244, 301
SacI	GAGCTC	1 cut(s)	347
SatI	GCNGC	1 cut(s)	128
Sau3AI	GATC	1 cut(s)	310
Sau96I	GGNCC	2 cut(s)	46, 284
SchI	GAGTC	1 cut(s)	366
ScrFI	CCNGG	2 cut(s)	291, 292
SduI	GDGCHC	1 cut(s)	347
SetI	ASST	4 cut(s)	29, 67, 300, 347
SinI	GGWCC	1 cut(s)	284
SmaI	CCCGGG	1 cut(s)	292
SphI	GCATGC	1 cut(s)	108
SsiI	CCGC	7 cut(s)	87, 99, 125, 128, 143, 164, 254
SstI	GAGCTC	1 cut(s)	347
StyD4I	CCNGG	2 cut(s)	289, 290
TaaI	ACNGT	3 cut(s)	153, 234, 261
TaqII	GACCGA	1 cut(s)	337
TauI	GCSGC	1 cut(s)	130
TfiI	GAWTC	1 cut(s)	19
TscAI	CASTG	1 cut(s)	14
TspDTI	ATGAA	1 cut(s)	191
TspGWI	ACGGA	2 cut(s)	58, 231
TspMI	CCCGGG	1 cut(s)	290
TspRI	CASTG	1 cut(s)	14
VpaK11BI	GGWCC	1 cut(s)	284
XceI	RCATGY	1 cut(s)	108
XmaI	CCCGGG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.