MD13G1025500.v1.1

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0007800
Physical Location & Seq
Reverse (-)
1828706 .. 1830159
1454 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1025500.v1.1.491

Sequence Viewer

Length: 393 bp
ATGCTCCTTTTGATTGCCTACGTACTAGGCCCAGTCCATGCCGATGAAACCCCAGGTGCTCCCGGCGAGGAAAAGTGCGGCTCGTGCACTCCAAGCCCACCACCGCCGGTTCCATCCCCACCACCACCATCACCGTGTCCTCCTCCACCACCATCACCGTGTCCTCCTCCACCAGCGCTTCCGCCACCGTTATCACCCCCGCCTTCTCCCAAGCTGCCACCGTGCGGCTCATGCGGTCAATACGCGCCTCCACCGCCGTCAACGCTGATATACATCACCGGTCCGCCTGGACAGTTGTACCCTATCGAACAGAATTTCAACGGTGCCAGTCGGAGTTCGGTCAACGCGTTACCGGTTTTGCTTGGGCTGCTGGCTCTCCTGCCTTTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

13.24

Weight (kDa)

4.96

Isoelectric Point (pI)

107.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 323
AccII CGCG 2 cut(s) 245, 347
AciI CCGC 8 cut(s) 78, 104, 182, 200, 225, 234, 254, 284
AcsI RAATTY 1 cut(s) 313
AfaI GTAC 2 cut(s) 24, 299
AfeI AGCGCT 1 cut(s) 177
AfiI CCNNNNNNNGG 1 cut(s) 224
AflIII ACRYGT 1 cut(s) 345
AgeI ACCGGT 2 cut(s) 278, 352
AgsI TTSAA 1 cut(s) 319
AjnI CCWGG 2 cut(s) 52, 286
AluBI AGCT 1 cut(s) 214
AluI AGCT 1 cut(s) 214
Alw21I GWGCWC 2 cut(s) 61, 89
Alw44I GTGCAC 1 cut(s) 85
Aor51HI AGCGCT 1 cut(s) 177
AoxI GGCC 1 cut(s) 28
ApaLI GTGCAC 1 cut(s) 85
ApeKI GCWGC 2 cut(s) 214, 367
ApoI RAATTY 1 cut(s) 313
AsiGI ACCGGT 2 cut(s) 278, 352
AspLEI GCGC 2 cut(s) 178, 247
AspS9I GGNCC 2 cut(s) 29, 281
AsuC2I CCSGG 1 cut(s) 63
AsuHPI GGTGA 4 cut(s) 123, 147, 186, 268
AvaII GGWCC 1 cut(s) 281
BaeGI GKGCMC 1 cut(s) 89
BaeI ACNNNNGTAYC 2 cut(s) 281, 314
BanI GGYRCC 1 cut(s) 323
BauI CACGAG 1 cut(s) 82
Bbv12I GWGCWC 2 cut(s) 61, 89
BbvI GCAGC 2 cut(s) 201, 354
BccI CCATC 3 cut(s) 121, 136, 160
BceAI ACGGC 1 cut(s) 241
BciT130I CCWGG 2 cut(s) 54, 288
BcnI CCSGG 1 cut(s) 63
BfaI CTAG 1 cut(s) 26
BfoI RGCGCY 1 cut(s) 179
BisI GCNGC 4 cut(s) 79, 215, 226, 368
BlsI GCNGC 4 cut(s) 80, 216, 227, 369
Bme1390I CCNGG 3 cut(s) 54, 63, 288
Bme18I GGWCC 1 cut(s) 281
BmgT120I GGNCC 2 cut(s) 29, 281
BmiI GGNNCC 2 cut(s) 111, 325
BmrFI CCNGG 3 cut(s) 54, 63, 288
BmrI ACTGGG 1 cut(s) 26
BmuI ACTGGG 1 cut(s) 26
BpuMI CCSGG 1 cut(s) 63
BsaAI YACGTR 1 cut(s) 22
BsaBI GATNNNNATC 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 52
BsaWI WCCGGW 2 cut(s) 278, 352
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse118I RCCGGY 3 cut(s) 106, 278, 352
Bse1I ACTGG 2 cut(s) 32, 327
Bse8I GATNNNNATC 1 cut(s) 272
BseBI CCWGG 2 cut(s) 54, 288
BseDI CCNNGG 1 cut(s) 52
BseGI GGATG 1 cut(s) 113
BseJI GATNNNNATC 1 cut(s) 272
BseLI CCNNNNNNNGG 1 cut(s) 224
BseNI ACTGG 2 cut(s) 32, 327
BseRI GAGGAG 2 cut(s) 132, 156
BseSI GKGCMC 1 cut(s) 89
BseXI GCAGC 2 cut(s) 201, 354
Bsh1236I CGCG 2 cut(s) 245, 347
BshFI GGCC 1 cut(s) 30
BshNI GGYRCC 1 cut(s) 323
BshTI ACCGGT 2 cut(s) 278, 352
BsiHKAI GWGCWC 2 cut(s) 61, 89
BsiSI CCGG 4 cut(s) 63, 107, 279, 353
BslI CCNNNNNNNGG 1 cut(s) 224
BsnI GGCC 1 cut(s) 30
Bsp1286I GDGCHC 2 cut(s) 61, 89
BspACI CCGC 8 cut(s) 78, 104, 182, 200, 225, 234, 254, 284
BspANI GGCC 1 cut(s) 30
BspFNI CGCG 2 cut(s) 245, 347
BspLI GGNNCC 2 cut(s) 111, 325
BspT107I GGYRCC 1 cut(s) 323
BsrFI RCCGGY 3 cut(s) 106, 278, 352
BsrI ACTGG 2 cut(s) 32, 327
BssAI RCCGGY 3 cut(s) 106, 278, 352
BssECI CCNNGG 1 cut(s) 52
BssSI CACGAG 1 cut(s) 82
Bst2BI CACGAG 1 cut(s) 82
Bst2UI CCWGG 2 cut(s) 54, 288
Bst4CI ACNGT 6 cut(s) 135, 159, 189, 222, 294, 323
BstBAI YACGTR 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 372
BstF5I GGATG 1 cut(s) 113
BstFNI CGCG 2 cut(s) 245, 347
BstH2I RGCGCY 1 cut(s) 179
BstHHI GCGC 2 cut(s) 178, 247
BstMWI GCNNNNNNNGC 6 cut(s) 84, 93, 231, 253, 262, 367
BstNI CCWGG 2 cut(s) 54, 288
BstSCI CCNGG 3 cut(s) 52, 61, 286
BstSLI GKGCMC 1 cut(s) 89
BstSNI TACGTA 1 cut(s) 22
BstUI CGCG 2 cut(s) 245, 347
BstV1I GCAGC 2 cut(s) 201, 354
BsuRI GGCC 1 cut(s) 30
BtsCI GGATG 1 cut(s) 113
Cac8I GCNNGC 1 cut(s) 372
CfoI GCGC 2 cut(s) 178, 247
Cfr10I RCCGGY 3 cut(s) 106, 278, 352
Cfr13I GGNCC 2 cut(s) 29, 281
CpoI CGGWCCG 1 cut(s) 281
Csp6I GTAC 2 cut(s) 23, 298
CspAI ACCGGT 2 cut(s) 278, 352
CspI CGGWCCG 1 cut(s) 281
CviAII CATG 2 cut(s) 38, 231
CviJI RGCY 7 cut(s) 30, 81, 96, 214, 228, 367, 374
CviKI_1 RGCY 7 cut(s) 30, 81, 96, 214, 228, 367, 374
CviQI GTAC 2 cut(s) 23, 298
EciI GGCGGA 2 cut(s) 171, 273
Eco105I TACGTA 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 281
Eco47III AGCGCT 1 cut(s) 177
EcoRII CCWGG 2 cut(s) 52, 286
FaeI CATG 2 cut(s) 41, 234
FaiI YATR 3 cut(s) 39, 232, 271
FatI CATG 2 cut(s) 37, 230
FauI CCCGC 1 cut(s) 207
Fnu4HI GCNGC 4 cut(s) 79, 215, 226, 368
FokI GGATG 1 cut(s) 100
Fsp4HI GCNGC 4 cut(s) 79, 215, 226, 368
FspBI CTAG 1 cut(s) 26
GlaI GCGC 2 cut(s) 177, 246
GluI GCNGC 4 cut(s) 79, 215, 226, 368
HaeII RGCGCY 1 cut(s) 179
HaeIII GGCC 1 cut(s) 30
HapII CCGG 4 cut(s) 63, 107, 279, 353
HhaI GCGC 2 cut(s) 178, 247
Hin1II CATG 2 cut(s) 41, 234
Hin6I GCGC 2 cut(s) 176, 245
HinP1I GCGC 2 cut(s) 176, 245
HincII GTYRAC 2 cut(s) 261, 343
HindII GTYRAC 2 cut(s) 261, 343
HpaII CCGG 4 cut(s) 63, 107, 279, 353
HphI GGTGA 4 cut(s) 123, 147, 186, 268
Hpy166II GTNNAC 3 cut(s) 87, 261, 343
Hpy188I TCNGA 1 cut(s) 333
Hpy8I GTNNAC 3 cut(s) 87, 261, 343
HpyAV CCTTC 1 cut(s) 213
HpyCH4III ACNGT 6 cut(s) 135, 159, 189, 222, 294, 323
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 1 cut(s) 87
HpyF10VI GCNNNNNNNGC 6 cut(s) 84, 93, 231, 253, 262, 367
HpySE526I ACGT 1 cut(s) 21
Hsp92II CATG 2 cut(s) 41, 234
HspAI GCGC 2 cut(s) 176, 245
LmnI GCTCC 2 cut(s) 9, 64
Lsp1109I GCAGC 2 cut(s) 201, 354
MaeI CTAG 1 cut(s) 26
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 1 cut(s) 348
MhlI GDGCHC 2 cut(s) 61, 89
MluCI AATT 1 cut(s) 313
MluI ACGCGT 1 cut(s) 345
MmeI TCCRAC 1 cut(s) 311
MnlI CCTC 6 cut(s) 61, 150, 153, 174, 177, 258
MslI CAYNNNNRTG 3 cut(s) 42, 133, 157
MspI CCGG 4 cut(s) 63, 107, 279, 353
MspR9I CCNGG 3 cut(s) 54, 63, 288
MvaI CCWGG 2 cut(s) 54, 288
MvnI CGCG 2 cut(s) 245, 347
MwoI GCNNNNNNNGC 6 cut(s) 84, 93, 231, 253, 262, 367
NciI CCSGG 1 cut(s) 63
NlaIII CATG 2 cut(s) 41, 234
NlaIV GGNNCC 2 cut(s) 111, 325
PcsI WCGNNNNNNNCGW 1 cut(s) 344
PinAI ACCGGT 2 cut(s) 278, 352
PkrI GCNGC 4 cut(s) 80, 216, 227, 369
Ppu21I YACGTR 1 cut(s) 22
Psp6I CCWGG 2 cut(s) 52, 286
PspGI CCWGG 2 cut(s) 52, 286
PspN4I GGNNCC 2 cut(s) 111, 325
PspPI GGNCC 2 cut(s) 29, 281
RsaI GTAC 2 cut(s) 24, 299
RsaNI GTAC 2 cut(s) 23, 298
RseI CAYNNNNRTG 3 cut(s) 42, 133, 157
Rsr2I CGGWCCG 1 cut(s) 281
RsrII CGGWCCG 1 cut(s) 281
SatI GCNGC 4 cut(s) 79, 215, 226, 368
Sau96I GGNCC 2 cut(s) 29, 281
ScrFI CCNGG 3 cut(s) 54, 63, 288
SduI GDGCHC 2 cut(s) 61, 89
SetI ASST 3 cut(s) 24, 58, 216
SinI GGWCC 1 cut(s) 281
SmiMI CAYNNNNRTG 3 cut(s) 42, 133, 157
SnaBI TACGTA 1 cut(s) 22
Sse9I AATT 1 cut(s) 313
SsiI CCGC 8 cut(s) 78, 104, 182, 200, 225, 234, 254, 284
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 3 cut(s) 52, 61, 286
TaaI ACNGT 6 cut(s) 135, 159, 189, 222, 294, 323
TaiI ACGT 1 cut(s) 24
TaqI TCGA 1 cut(s) 306
TaqII GACCGA 1 cut(s) 328
TasI AATT 1 cut(s) 313
TauI GCSGC 2 cut(s) 81, 228
TseI GCWGC 2 cut(s) 214, 367
TspDTI ATGAA 1 cut(s) 60
VneI GTGCAC 1 cut(s) 85
VpaK11BI GGWCC 1 cut(s) 281
XapI RAATTY 1 cut(s) 313
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.