AT1G02570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011963
Physical Location & Seq
Forward (+)
541236 .. 542245
1010 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G02570.1

Sequence Viewer

Length: 837 bp
ATGGAACATGAAGAAACACAGAAGAAGACAGGAATCAGCTGGTCACTGGTTCGACCATTTCAAATGATCTCCATTAGCCTTCTTAGTCTTCTTGTCCCTCTCTCTTTCCTCTTCCTTTCACGTCTCTCCGTTTCCTCCTCCTCAGCTCCAGTCACCGTCTCCGGAGTATTCTCCCTTCTTCATCAGGCCGATGTCGGAATCTTATACACAATCTTGTCCCTCATCATCGTCTCCACTTTAATCCACATTCTCTCCGGGAAACCAGAGTGCTCTGTTCTGCATTCCCATCTATACATTTGCTGGATCGTTCTCTTCATCGTTCAAGCTTGTGTCGCCTTCGGAATCGAAGGAACCATGAGCACGACCATTTCTATCGATACAGACAAAAGCTTTTCTCTTGCTGCTCAAGAAAGGTGGGTTTTGGTTAGGGTTATGTTCTTTTTGGGCCTACACGAAGTGATGCTAATGTGGTTCAGAGTCGTGGTTAAGCCGGTGATTGACGACACTGTGTTTGGGGTTTACGTGGAGGAGGAGAGATGGTCGGAGAGAGCTGTCGTGGCGGTGACTTTTGGTCTAATGTGGTGGTGGAGGCTAAGAGATGAGGTAGAAAGTTTGGTGGTGGTTGCAGAGGTTAAACGTAACCTTCAGATACGTTTGGAGGGTCTCGATTTTGTGAACTGGTGGATGTATTACATCTGTGTTGGAATTGGCTTGGTGAAGATCTTCAAGGGTTTTTTGTATTTTGTGAATATGTTAATTTTGACCATTAATAGGTCGAGAAAATGCTGTGAATCGTGTCTTGTTGATGATATGTGTAATATTGATGATCATGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

278

Amino Acids

31.83

Weight (kDa)

5.81

Isoelectric Point (pI)

40.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 161
AciI CCGC 1 cut(s) 560
AclWI GGATC 1 cut(s) 311
AcuI CTGAAG 1 cut(s) 629
AdeI CACNNNGTG 1 cut(s) 457
AfiI CCNNNNNNNGG 1 cut(s) 771
AgsI TTSAA 3 cut(s) 62, 323, 727
AhdI GACNNNNNGTC 1 cut(s) 570
AjiI CACGTC 1 cut(s) 122
AluBI AGCT 5 cut(s) 39, 146, 326, 390, 551
AluI AGCT 5 cut(s) 39, 146, 326, 390, 551
Alw21I GWGCWC 2 cut(s) 272, 362
Alw26I GTCTC 4 cut(s) 128, 163, 235, 668
AlwI GGATC 1 cut(s) 311
Aor13HI TCCGGA 1 cut(s) 161
AoxI GGCC 2 cut(s) 186, 445
ApeKI GCWGC 1 cut(s) 401
ArsI GACNNNNNNTTYG 2 cut(s) 494, 526
AseI ATTAAT 1 cut(s) 768
Asp700I GAANNNNTTC 1 cut(s) 722
AspS9I GGNCC 1 cut(s) 445
AsuC2I CCSGG 1 cut(s) 256
AsuHPI GGTGA 4 cut(s) 145, 505, 574, 727
BarI GAAGNNNNNNTAC 2 cut(s) 159, 191
BbsI GAAGAC 2 cut(s) 32, 80
Bbv12I GWGCWC 2 cut(s) 272, 362
BbvCI CCTCAGC 1 cut(s) 142
BbvI GCAGC 1 cut(s) 388
BccI CCATC 2 cut(s) 294, 531
BclI TGATCA 1 cut(s) 826
BcnI CCSGG 1 cut(s) 256
BcoDI GTCTC 4 cut(s) 128, 163, 235, 668
BglII AGATCT 1 cut(s) 720
BisI GCNGC 1 cut(s) 402
BlsI GCNGC 1 cut(s) 403
Bme1390I CCNGG 1 cut(s) 256
BmeRI GACNNNNNGTC 1 cut(s) 570
BmgBI CACGTC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 445
BmiI GGNNCC 1 cut(s) 352
BmrFI CCNGG 1 cut(s) 256
BmsI GCATC 1 cut(s) 450
BpiI GAAGAC 2 cut(s) 32, 80
BpmI CTGGAG 1 cut(s) 132
Bpu10I CCTNAGC 1 cut(s) 142
BpuEI CTTGAG 1 cut(s) 390
BpuMI CCSGG 1 cut(s) 256
Bsa29I ATCGAT 1 cut(s) 375
BsaAI YACGTR 1 cut(s) 523
BsaI GGTCTC 1 cut(s) 668
BsaWI WCCGGW 1 cut(s) 161
BsaXI ACNNNNNCTCC 4 cut(s) 236, 266, 524, 554
Bsc4I CCNNNNNNNGG 1 cut(s) 771
Bse118I RCCGGY 1 cut(s) 490
Bse1I ACTGG 3 cut(s) 51, 149, 683
BseAI TCCGGA 1 cut(s) 161
BseCI ATCGAT 1 cut(s) 375
BseGI GGATG 1 cut(s) 690
BseLI CCNNNNNNNGG 1 cut(s) 771
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 3 cut(s) 51, 149, 683
BseRI GAGGAG 4 cut(s) 127, 130, 542, 545
BseXI GCAGC 1 cut(s) 388
BshFI GGCC 2 cut(s) 188, 447
BshVI ATCGAT 1 cut(s) 375
BsiHKAI GWGCWC 2 cut(s) 272, 362
BsiSI CCGG 3 cut(s) 162, 255, 491
BslFI GGGAC 2 cut(s) 80, 202
BslI CCNNNNNNNGG 1 cut(s) 771
BsmAI GTCTC 4 cut(s) 128, 163, 235, 668
BsmBI CGTCTC 3 cut(s) 128, 163, 235
BsmFI GGGAC 2 cut(s) 80, 202
BsmI GAATGC 1 cut(s) 280
BsnI GGCC 2 cut(s) 188, 447
Bso31I GGTCTC 1 cut(s) 668
Bsp1286I GDGCHC 2 cut(s) 272, 362
Bsp13I TCCGGA 1 cut(s) 161
Bsp143I GATC 4 cut(s) 66, 303, 720, 826
BspACI CCGC 1 cut(s) 560
BspANI GGCC 2 cut(s) 188, 447
BspCNI CTCAG 1 cut(s) 155
BspDI ATCGAT 1 cut(s) 375
BspEI TCCGGA 1 cut(s) 161
BspLI GGNNCC 1 cut(s) 352
BspPI GGATC 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 668
BsrFI RCCGGY 1 cut(s) 490
BsrI ACTGG 3 cut(s) 51, 149, 683
BssAI RCCGGY 1 cut(s) 490
BssMI GATC 4 cut(s) 66, 303, 720, 826
Bst4CI ACNGT 2 cut(s) 157, 508
Bst6I CTCTTC 2 cut(s) 116, 317
BstBAI YACGTR 1 cut(s) 523
BstDEI CTNAG 3 cut(s) 83, 142, 593
BstF5I GGATG 1 cut(s) 690
BstKTI GATC 4 cut(s) 69, 306, 723, 829
BstMAI GTCTC 4 cut(s) 128, 163, 235, 668
BstMBI GATC 4 cut(s) 66, 303, 720, 826
BstMWI GCNNNNNNNGC 2 cut(s) 332, 557
BstSCI CCNGG 1 cut(s) 254
BstV1I GCAGC 1 cut(s) 388
BstV2I GAAGAC 2 cut(s) 32, 80
BstX2I RGATCY 1 cut(s) 720
BstYI RGATCY 1 cut(s) 720
Bsu15I ATCGAT 1 cut(s) 375
BsuRI GGCC 2 cut(s) 188, 447
BsuTUI ATCGAT 1 cut(s) 375
BtrI CACGTC 1 cut(s) 122
BtsCI GGATG 1 cut(s) 690
BtsIMutI CAGTG 2 cut(s) 44, 504
Cfr10I RCCGGY 1 cut(s) 490
Cfr13I GGNCC 1 cut(s) 445
ClaI ATCGAT 1 cut(s) 375
CspCI CAANNNNNGTGG 2 cut(s) 395, 430
CviAII CATG 3 cut(s) 8, 355, 830
DdeI CTNAG 3 cut(s) 83, 142, 593
DpnI GATC 4 cut(s) 68, 305, 722, 828
DpnII GATC 4 cut(s) 66, 303, 720, 826
DraIII CACNNNGTG 1 cut(s) 457
DriI GACNNNNNGTC 1 cut(s) 570
Eam1104I CTCTTC 2 cut(s) 116, 317
Eam1105I GACNNNNNGTC 1 cut(s) 570
EarI CTCTTC 2 cut(s) 116, 317
Eco31I GGTCTC 1 cut(s) 668
Eco57I CTGAAG 1 cut(s) 629
Esp3I CGTCTC 3 cut(s) 128, 163, 235
FaeI CATG 3 cut(s) 11, 358, 833
FaiI YATR 8 cut(s) 9, 205, 292, 356, 434, 752, 812, 831
FaqI GGGAC 2 cut(s) 80, 202
FatI CATG 3 cut(s) 7, 354, 829
FbaI TGATCA 1 cut(s) 826
Fnu4HI GCNGC 1 cut(s) 402
FokI GGATG 1 cut(s) 697
Fsp4HI GCNGC 1 cut(s) 402
GluI GCNGC 1 cut(s) 402
GsuI CTGGAG 1 cut(s) 132
HaeIII GGCC 2 cut(s) 188, 447
HapII CCGG 3 cut(s) 162, 255, 491
Hin1II CATG 3 cut(s) 11, 358, 833
HindIII AAGCTT 2 cut(s) 324, 388
HinfI GANTC 5 cut(s) 33, 198, 342, 477, 791
HpaII CCGG 3 cut(s) 162, 255, 491
HphI GGTGA 4 cut(s) 145, 505, 574, 727
Hpy166II GTNNAC 2 cut(s) 520, 676
Hpy188I TCNGA 5 cut(s) 197, 341, 476, 544, 648
Hpy188III TCNNGA 4 cut(s) 162, 407, 665, 777
Hpy8I GTNNAC 2 cut(s) 520, 676
HpyAV CCTTC 5 cut(s) 89, 185, 341, 346, 653
HpyCH4III ACNGT 2 cut(s) 157, 508
HpyCH4IV ACGT 4 cut(s) 121, 522, 637, 652
HpyCH4V TGCA 2 cut(s) 280, 626
HpyF10VI GCNNNNNNNGC 2 cut(s) 332, 557
HpyF3I CTNAG 3 cut(s) 83, 142, 593
HpySE526I ACGT 4 cut(s) 121, 522, 637, 652
Hsp92II CATG 3 cut(s) 11, 358, 833
Kpn2I TCCGGA 1 cut(s) 161
Ksp22I TGATCA 1 cut(s) 826
Kzo9I GATC 4 cut(s) 66, 303, 720, 826
LmnI GCTCC 1 cut(s) 151
Lsp1109I GCAGC 1 cut(s) 388
LweI GCATC 1 cut(s) 450
MaeII ACGT 4 cut(s) 121, 522, 637, 652
MaeIII GTNAC 4 cut(s) 42, 151, 562, 638
MalI GATC 4 cut(s) 68, 305, 722, 828
MboI GATC 4 cut(s) 66, 303, 720, 826
MboII GAAGA 9 cut(s) 23, 34, 37, 80, 103, 170, 304, 715, 730
MflI RGATCY 1 cut(s) 720
MhlI GDGCHC 2 cut(s) 272, 362
MluCI AATT 2 cut(s) 705, 756
MlyI GAGTC 1 cut(s) 486
MmeI TCCRAC 3 cut(s) 175, 522, 682
MroI TCCGGA 1 cut(s) 161
MroXI GAANNNNTTC 1 cut(s) 722
MseI TTAA 5 cut(s) 239, 486, 633, 755, 768
MspA1I CMGCKG 1 cut(s) 39
MspI CCGG 3 cut(s) 162, 255, 491
MspR9I CCNGG 1 cut(s) 256
Mva1269I GAATGC 1 cut(s) 280
MwoI GCNNNNNNNGC 2 cut(s) 332, 557
NciI CCSGG 1 cut(s) 256
NdeII GATC 4 cut(s) 66, 303, 720, 826
NlaIII CATG 3 cut(s) 11, 358, 833
NlaIV GGNNCC 1 cut(s) 352
NmuCI GTSAC 3 cut(s) 42, 151, 562
PctI GAATGC 1 cut(s) 280
PdmI GAANNNNTTC 1 cut(s) 722
PfeI GAWTC 4 cut(s) 33, 198, 342, 791
PfoI TCCNGGA 1 cut(s) 254
PkrI GCNGC 1 cut(s) 403
PleI GAGTC 1 cut(s) 485
PpsI GAGTC 1 cut(s) 485
Ppu21I YACGTR 1 cut(s) 523
PshBI ATTAAT 1 cut(s) 768
PspN4I GGNNCC 1 cut(s) 352
PspPI GGNCC 1 cut(s) 445
PsuI RGATCY 1 cut(s) 720
PvuII CAGCTG 1 cut(s) 39
SaqAI TTAA 5 cut(s) 239, 486, 633, 755, 768
SatI GCNGC 1 cut(s) 402
Sau3AI GATC 4 cut(s) 66, 303, 720, 826
Sau96I GGNCC 1 cut(s) 445
SchI GAGTC 1 cut(s) 486
ScrFI CCNGG 1 cut(s) 256
SduI GDGCHC 2 cut(s) 272, 362
SfaNI GCATC 1 cut(s) 450
SmlI CTYRAG 1 cut(s) 405
SmoI CTYRAG 1 cut(s) 405
Sse9I AATT 2 cut(s) 705, 756
SsiI CCGC 1 cut(s) 560
SspI AATATT 1 cut(s) 820
StyD4I CCNGG 1 cut(s) 254
TaaI ACNGT 2 cut(s) 157, 508
TaiI ACGT 4 cut(s) 124, 525, 640, 655
TaqI TCGA 5 cut(s) 52, 345, 375, 666, 776
TasI AATT 2 cut(s) 705, 756
TfiI GAWTC 4 cut(s) 33, 198, 342, 791
Tru1I TTAA 5 cut(s) 239, 486, 633, 755, 768
Tru9I TTAA 5 cut(s) 239, 486, 633, 755, 768
TscAI CASTG 2 cut(s) 51, 511
TseFI GTSAC 3 cut(s) 42, 151, 562
TseI GCWGC 1 cut(s) 401
Tsp45I GTSAC 3 cut(s) 42, 151, 562
TspDTI ATGAA 3 cut(s) 24, 170, 304
TspGWI ACGGA 1 cut(s) 118
TspRI CASTG 2 cut(s) 51, 511
VspI ATTAAT 1 cut(s) 768
XmnI GAANNNNTTC 1 cut(s) 722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.