Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0011963

Physical Location & Seq

Genomic Coordinates Reverse (-)

2458616 .. 2459491

Gene Structure 876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000601

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGGTGGGCAACAAAAGGCTATGAACCTCCTGAATTCTAGCTTTCTGAAACAGCCTTTCCACATTCTCACAATAACCCTTCTCAGCTTATTGCTTCCCCTCTCTTTTCTCCTCCTATCTAGGCTTTCTTCTGCCAATTACTACTATCTCTTAACCTTGAGTACTACTGATAGTTCTCCTTCTCCTTTAGGGTCCTCTACCTATTTTTGTGATTTCTGCTCCTCTATATTCCTATACTCAACCCCTCCTCTTCTCTACATCCTTGTGTCCATTGTCAGCATTGCCGCGCTTATCCACGGCCTAACAGGTAAAGTTACCATTATAGCCCAGCCTCCATCTCCCATTTTCCGTCCCCGTTTGTACACTGCATGGGTTTTCCTATGCACATTACAAGTCTGCGTCGGTTTGGGGATCGAGGAGAGCATAGCTACAGGGATCGATGGCTCGAGTCTCAGCAGTCTTGACAAATGTAATTTGTTGAGCAGGGTAGTGTTTTTCTTGGGCTTGCATGAGACCATGCTCCATTGGTGTAGGGTCGTGGTGAAGCCGGTGGTGGATGACACGGTTTTTGGGGGAGCTAGGGAGGAGGGGTGGGTGGAGAGGGGGGTGATGGCGGCGAGCTTTGGTTGGTTGTGGTGGTGGAGGTTGAGGGATGAGATTGAGTCTTTGGTGGTTGTGACTATGGCCAAGAAAGACTTGTCAATGAATATAGGGATGGCTGACTTTGTTGGTTGGTGGTTGTATTATGTCACTGTAACTATTGGAATGGTTAGAGTTGTGAAGGGTTTTATGTGGCTTGCTATGGTTTTCTTATGTAGAAGAAGAGAAGGAAACAATGTTACGAACATTTATGGTGATCCTGAAGACAAAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

292

Amino Acids

32.59

Weight (kDa)

7.57

Isoelectric Point (pI)

46.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02570 AT1G02575 AT2G47360
malus_domestica	MD03G1293400.v1.1 MD03G1293600.v1.1
prunus_persica	Prupe.8G266000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0241031 RchiOBHm_Chr7g0241061
rosa_laevigata	RLG00000000601
rosa_multiflora	Rmu_sc0003187.1_g000007
rosa_roxburghii	Rroxscaffold_3G00219300
rosa_rugosa	Rorug07G0341900
rosa_samantha	Rh7AG496700 Rh7BG467900 Rh7CG513900 Rh7DG481100
rosa_wichuraiana	Rw0G005800 Rw0G009710 Rw7G041950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	287
AciI	CCGC	2 cut(s)	285, 614
AclWI	GGATC	3 cut(s)	419, 443, 851
AcoI	YGGCCR	1 cut(s)	684
AcsI	RAATTY	1 cut(s)	34
AfaI	GTAC	2 cut(s)	163, 362
AluBI	AGCT	5 cut(s)	42, 87, 428, 578, 621
AluI	AGCT	5 cut(s)	42, 87, 428, 578, 621
Alw26I	GTCTC	2 cut(s)	455, 506
AlwI	GGATC	3 cut(s)	419, 443, 851
Ama87I	CYCGRG	1 cut(s)	445
AoxI	GGCC	2 cut(s)	298, 684
ApoI	RAATTY	1 cut(s)	34
ArsI	GACNNNNNNTTYG	2 cut(s)	551, 583
AspLEI	GCGC	1 cut(s)	289
AspS9I	GGNCC	1 cut(s)	192
AsuHPI	GGTGA	3 cut(s)	553, 619, 866
AvaI	CYCGRG	1 cut(s)	445
AvaII	GGWCC	1 cut(s)	192
BalI	TGGCCA	1 cut(s)	686
BbsI	GAAGAC	1 cut(s)	870
BccI	CCATC	4 cut(s)	343, 434, 604, 709
BceAI	ACGGC	1 cut(s)	313
BcoDI	GTCTC	2 cut(s)	455, 506
BfaI	CTAG	3 cut(s)	39, 120, 579
BfmI	CTRYAG	1 cut(s)	429
BisI	GCNGC	2 cut(s)	285, 615
BlsI	GCNGC	2 cut(s)	286, 616
BmcAI	AGTACT	1 cut(s)	163
Bme18I	GGWCC	1 cut(s)	192
BmeT110I	CYCGRG	1 cut(s)	445
BmgT120I	GGNCC	1 cut(s)	192
BmiI	GGNNCC	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	870
BpuEI	CTTGAG	1 cut(s)	178
Bsa29I	ATCGAT	1 cut(s)	438
BsaI	GGTCTC	1 cut(s)	506
BsaJI	CCNNGG	1 cut(s)	295
BsaXI	ACNNNNNCTCC	2 cut(s)	575, 605
Bse118I	RCCGGY	1 cut(s)	547
Bse3DI	GCAATG	1 cut(s)	279
BseCI	ATCGAT	1 cut(s)	438
BseDI	CCNNGG	1 cut(s)	295
BseGI	GGATG	4 cut(s)	258, 562, 658, 720
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	2 cut(s)	97, 466
BseRI	GAGGAG	5 cut(s)	101, 211, 237, 431, 599
BseYI	CCCAGC	1 cut(s)	327
Bsh1236I	CGCG	1 cut(s)	287
BshFI	GGCC	2 cut(s)	300, 686
BshVI	ATCGAT	1 cut(s)	438
BsiHKCI	CYCGRG	1 cut(s)	445
BsiSI	CCGG	1 cut(s)	548
BslFI	GGGAC	1 cut(s)	336
BsmAI	GTCTC	2 cut(s)	455, 506
BsmFI	GGGAC	1 cut(s)	336
BsnI	GGCC	2 cut(s)	300, 686
Bso31I	GGTCTC	1 cut(s)	506
BsoBI	CYCGRG	1 cut(s)	445
Bsp1407I	TGTACA	1 cut(s)	360
Bsp143I	GATC	3 cut(s)	411, 435, 856
BspACI	CCGC	2 cut(s)	285, 614
BspANI	GGCC	2 cut(s)	300, 686
BspCNI	CTCAG	2 cut(s)	96, 465
BspDI	ATCGAT	1 cut(s)	438
BspFNI	CGCG	1 cut(s)	287
BspLI	GGNNCC	1 cut(s)	193
BspPI	GGATC	3 cut(s)	419, 443, 851
BspTNI	GGTCTC	1 cut(s)	506
BsrDI	GCAATG	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	547
BsrGI	TGTACA	1 cut(s)	360
BssAI	RCCGGY	1 cut(s)	547
BssECI	CCNNGG	1 cut(s)	295
BssMI	GATC	3 cut(s)	411, 435, 856
Bst4CI	ACNGT	2 cut(s)	565, 754
Bst6I	CTCTTC	2 cut(s)	255, 817
BstAUI	TGTACA	1 cut(s)	360
BstC8I	GCNNGC	3 cut(s)	506, 619, 798
BstDEI	CTNAG	2 cut(s)	83, 452
BstDSI	CCRYGG	1 cut(s)	295
BstF5I	GGATG	4 cut(s)	258, 562, 658, 720
BstFNI	CGCG	1 cut(s)	287
BstHHI	GCGC	1 cut(s)	289
BstKTI	GATC	3 cut(s)	414, 438, 859
BstMAI	GTCTC	2 cut(s)	455, 506
BstMBI	GATC	3 cut(s)	411, 435, 856
BstSFI	CTRYAG	1 cut(s)	429
BstUI	CGCG	1 cut(s)	287
BstV2I	GAAGAC	1 cut(s)	870
Bsu15I	ATCGAT	1 cut(s)	438
BsuRI	GGCC	2 cut(s)	300, 686
BsuTUI	ATCGAT	1 cut(s)	438
BtgI	CCRYGG	1 cut(s)	295
BtsCI	GGATG	4 cut(s)	258, 562, 658, 720
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	2 cut(s)	363, 750
Cac8I	GCNNGC	3 cut(s)	506, 619, 798
CfoI	GCGC	1 cut(s)	289
Cfr10I	RCCGGY	1 cut(s)	547
Cfr13I	GGNCC	1 cut(s)	192
ClaI	ATCGAT	1 cut(s)	438
CseI	GACGC	1 cut(s)	388
Csp6I	GTAC	2 cut(s)	162, 361
CviAII	CATG	3 cut(s)	369, 509, 517
CviQI	GTAC	2 cut(s)	162, 361
DdeI	CTNAG	2 cut(s)	83, 452
DpnI	GATC	3 cut(s)	413, 437, 858
DpnII	GATC	3 cut(s)	411, 435, 856
EaeI	YGGCCR	1 cut(s)	684
Eam1104I	CTCTTC	2 cut(s)	255, 817
EarI	CTCTTC	2 cut(s)	255, 817
Eco31I	GGTCTC	1 cut(s)	506
Eco47I	GGWCC	1 cut(s)	192
Eco88I	CYCGRG	1 cut(s)	445
EcoO109I	RGGNCCY	1 cut(s)	192
EcoRI	GAATTC	1 cut(s)	34
FaeI	CATG	3 cut(s)	372, 512, 520
FalI	AAGNNNNNCTT	2 cut(s)	680, 712
FaqI	GGGAC	1 cut(s)	336
FatI	CATG	3 cut(s)	368, 508, 516
Fnu4HI	GCNGC	2 cut(s)	285, 615
FokI	GGATG	4 cut(s)	245, 569, 665, 727
Fsp4HI	GCNGC	2 cut(s)	285, 615
FspBI	CTAG	3 cut(s)	39, 120, 579
GlaI	GCGC	1 cut(s)	288
GluI	GCNGC	2 cut(s)	285, 615
GsaI	CCCAGC	1 cut(s)	331
HaeIII	GGCC	2 cut(s)	300, 686
HapII	CCGG	1 cut(s)	548
HgaI	GACGC	1 cut(s)	388
HhaI	GCGC	1 cut(s)	289
Hin1II	CATG	3 cut(s)	372, 512, 520
Hin6I	GCGC	1 cut(s)	287
HinP1I	GCGC	1 cut(s)	287
HinfI	GANTC	2 cut(s)	448, 662
HpaII	CCGG	1 cut(s)	548
HphI	GGTGA	3 cut(s)	553, 619, 866
Hpy166II	GTNNAC	1 cut(s)	363
Hpy188I	TCNGA	2 cut(s)	48, 875
Hpy188III	TCNNGA	3 cut(s)	31, 461, 860
Hpy8I	GTNNAC	1 cut(s)	363
Hpy99I	CGWCG	1 cut(s)	404
HpyAV	CCTTC	4 cut(s)	89, 189, 775, 821
HpyCH4III	ACNGT	2 cut(s)	565, 754
HpyCH4V	TGCA	3 cut(s)	368, 384, 508
HpyF3I	CTNAG	2 cut(s)	83, 452
Hsp92II	CATG	3 cut(s)	372, 512, 520
HspAI	GCGC	1 cut(s)	287
Kzo9I	GATC	3 cut(s)	411, 435, 856
LmnI	GCTCC	3 cut(s)	224, 525, 575
LpnPI	CCDG	6 cut(s)	44, 291, 341, 417, 469, 561
MaeI	CTAG	3 cut(s)	39, 120, 579
MaeIII	GTNAC	5 cut(s)	313, 676, 748, 754, 838
MalI	GATC	3 cut(s)	413, 437, 858
MboI	GATC	3 cut(s)	411, 435, 856
MboII	GAAGA	5 cut(s)	120, 242, 831, 834, 875
MlsI	TGGCCA	1 cut(s)	686
MluCI	AATT	3 cut(s)	34, 136, 472
MluNI	TGGCCA	1 cut(s)	686
MlyI	GAGTC	2 cut(s)	457, 671
Mox20I	TGGCCA	1 cut(s)	686
MscI	TGGCCA	1 cut(s)	686
MseI	TTAA	1 cut(s)	152
MslI	CAYNNNNRTG	1 cut(s)	263
Msp20I	TGGCCA	1 cut(s)	686
MspI	CCGG	1 cut(s)	548
MvnI	CGCG	1 cut(s)	287
NdeII	GATC	3 cut(s)	411, 435, 856
NlaIII	CATG	3 cut(s)	372, 512, 520
NlaIV	GGNNCC	1 cut(s)	193
NmuCI	GTSAC	2 cut(s)	676, 748
PaeR7I	CTCGAG	1 cut(s)	445
PflFI	GACNNNGTC	1 cut(s)	869
PkrI	GCNGC	2 cut(s)	286, 616
PleI	GAGTC	2 cut(s)	456, 670
PpsI	GAGTC	2 cut(s)	456, 670
PpuMI	RGGWCCY	1 cut(s)	192
Psp5II	RGGWCCY	1 cut(s)	192
PspFI	CCCAGC	1 cut(s)	327
PspN4I	GGNNCC	1 cut(s)	193
PspPI	GGNCC	1 cut(s)	192
PspPPI	RGGWCCY	1 cut(s)	192
PspXI	VCTCGAGB	1 cut(s)	445
PsyI	GACNNNGTC	1 cut(s)	869
RsaI	GTAC	2 cut(s)	163, 362
RsaNI	GTAC	2 cut(s)	162, 361
RseI	CAYNNNNRTG	1 cut(s)	263
SaqAI	TTAA	1 cut(s)	152
SatI	GCNGC	2 cut(s)	285, 615
Sau3AI	GATC	3 cut(s)	411, 435, 856
Sau96I	GGNCC	1 cut(s)	192
ScaI	AGTACT	1 cut(s)	163
SchI	GAGTC	2 cut(s)	457, 671
SfcI	CTRYAG	1 cut(s)	429
Sfr274I	CTCGAG	1 cut(s)	445
SinI	GGWCC	1 cut(s)	192
SlaI	CTCGAG	1 cut(s)	445
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	2 cut(s)	157, 445
SmoI	CTYRAG	2 cut(s)	157, 445
Sse9I	AATT	3 cut(s)	34, 136, 472
SsiI	CCGC	2 cut(s)	285, 614
SspMI	CTAG	3 cut(s)	39, 120, 579
TaaI	ACNGT	2 cut(s)	565, 754
TaqI	TCGA	3 cut(s)	414, 438, 446
TasI	AATT	3 cut(s)	34, 136, 472
TatI	WGTACW	2 cut(s)	161, 360
TauI	GCSGC	2 cut(s)	287, 617
Tru1I	TTAA	1 cut(s)	152
Tru9I	TTAA	1 cut(s)	152
TscAI	CASTG	2 cut(s)	370, 757
TseFI	GTSAC	2 cut(s)	676, 748
Tsp45I	GTSAC	2 cut(s)	676, 748
TspDTI	ATGAA	2 cut(s)	38, 719
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	2 cut(s)	370, 757
Tth111I	GACNNNGTC	1 cut(s)	869
VpaK11BI	GGWCC	1 cut(s)	192
XapI	RAATTY	1 cut(s)	34
XhoI	CTCGAG	1 cut(s)	445
XspI	CTAG	3 cut(s)	39, 120, 579
ZrmI	AGTACT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.