Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0011963

Physical Location & Seq

Genomic Coordinates Forward (+)

69338843 .. 69340304

Gene Structure 1462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG513900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGGTGGGCAACAAAAGGCTGCTATGAACCTCCTGAATTCTAGCTTTCTGAAACAGCCTTTCCACATTCTCACAATAACCCTTCTAAGTTTACTGCTTCCCCTCTCTTTTCTCCTCCTATCTAGGCTTTCTTCTGCCAATTACTACTATCTCTTAACCTTGAGTACTACTGATAGTCCTCCTTCTCCTTTAGGGTCCTCTACCTATTTTTGTGATTTCTGCTCCTCTCTATTCCTATACTCAACCCCTTCTCTTCTCTACATCCTTGTGTCCATTGTCAGCATTGCCGCGCTGATCCACGGCCTAACAGGTAAAGTTACCATTATAGCCCAGCCTCCATCTCCCATTTTCCGTCCCCGTTTGTACACTGCGTGGATTTTCCTATGCACATTACAAGTCTGCGTCGGTTTGGGGATCGAGGAGAGCATAGCTACAGGGATCGATGGCTCGAGTCTCAGCAGTCTTGACAAATGTAATTTGTTGAGCAGAGTAGTGTTTTTCTTGGGCTTGCATGAGACCATGCTCCATTGGTGTAGGGTCGTGGTGAAGCCGGTGGTGGATGACACGGTTTTTGGGGGAGCTAGGGAGGAGAGGTGGGTGGAGAGGGGGGTGATGGCGGCGAGCTTTGGTTGGTTGTGGTGGTGGAGGTTGAGGGATGAGATTGAGTCTTTGGTGGTTGTGACTATGGCTAAGAAAGAGTTGTCAATGAATATAGGGATGGCTGACTTTGTTGGTTGGTGGTTGTATTATGTCACTGTAACTATTGGAATGGTTAGAGTTGTGAAGGGTTTTATGTGGCTTGCTATGGTTTTCTTATGTAGAAGAAGAGGAGGAAACAATGTTACGAACAGTTATGGTGATCCTGAAGACAAAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

292

Amino Acids

32.69

Weight (kDa)

8.45

Isoelectric Point (pI)

46.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02570 AT1G02575 AT2G47360
malus_domestica	MD03G1293400.v1.1 MD03G1293600.v1.1
prunus_persica	Prupe.8G266000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0241031 RchiOBHm_Chr7g0241061
rosa_laevigata	RLG00000000601
rosa_multiflora	Rmu_sc0003187.1_g000007
rosa_roxburghii	Rroxscaffold_3G00219300
rosa_rugosa	Rorug07G0341900
rosa_samantha	Rh7AG496700 Rh7BG467900 Rh7CG513900 Rh7DG481100
rosa_wichuraiana	Rw0G005800 Rw0G009710 Rw7G041950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	290
AciI	CCGC	2 cut(s)	288, 617
AclWI	GGATC	4 cut(s)	289, 422, 446, 854
AcsI	RAATTY	1 cut(s)	37
AdeI	CACNNNGTG	1 cut(s)	372
AfaI	GTAC	2 cut(s)	166, 365
AluBI	AGCT	4 cut(s)	45, 431, 581, 624
AluI	AGCT	4 cut(s)	45, 431, 581, 624
Alw26I	GTCTC	2 cut(s)	458, 509
AlwI	GGATC	4 cut(s)	289, 422, 446, 854
Ama87I	CYCGRG	1 cut(s)	448
AoxI	GGCC	1 cut(s)	301
ApeKI	GCWGC	1 cut(s)	20
ApoI	RAATTY	1 cut(s)	37
ArsI	GACNNNNNNTTYG	2 cut(s)	554, 586
AspLEI	GCGC	1 cut(s)	292
AspS9I	GGNCC	1 cut(s)	195
AsuHPI	GGTGA	3 cut(s)	556, 622, 869
AvaI	CYCGRG	1 cut(s)	448
AvaII	GGWCC	1 cut(s)	195
BbsI	GAAGAC	1 cut(s)	873
BbvI	GCAGC	1 cut(s)	7
BccI	CCATC	4 cut(s)	346, 437, 607, 712
BceAI	ACGGC	1 cut(s)	316
BcoDI	GTCTC	2 cut(s)	458, 509
BfaI	CTAG	3 cut(s)	42, 123, 582
BfmI	CTRYAG	1 cut(s)	432
BisI	GCNGC	3 cut(s)	21, 288, 618
BlsI	GCNGC	3 cut(s)	22, 289, 619
BmcAI	AGTACT	1 cut(s)	166
Bme18I	GGWCC	1 cut(s)	195
BmeT110I	CYCGRG	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	195
BmiI	GGNNCC	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	873
BpuEI	CTTGAG	1 cut(s)	181
Bsa29I	ATCGAT	1 cut(s)	441
BsaI	GGTCTC	1 cut(s)	509
BsaJI	CCNNGG	1 cut(s)	298
BsaXI	ACNNNNNCTCC	2 cut(s)	578, 608
Bse118I	RCCGGY	1 cut(s)	550
Bse3DI	GCAATG	1 cut(s)	282
BseCI	ATCGAT	1 cut(s)	441
BseDI	CCNNGG	1 cut(s)	298
BseGI	GGATG	4 cut(s)	261, 565, 661, 723
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	469
BseRI	GAGGAG	5 cut(s)	104, 214, 434, 602, 843
BseXI	GCAGC	1 cut(s)	7
BseYI	CCCAGC	1 cut(s)	330
Bsh1236I	CGCG	1 cut(s)	290
BshFI	GGCC	1 cut(s)	303
BshVI	ATCGAT	1 cut(s)	441
BsiHKCI	CYCGRG	1 cut(s)	448
BsiSI	CCGG	1 cut(s)	551
BslFI	GGGAC	1 cut(s)	339
BsmAI	GTCTC	2 cut(s)	458, 509
BsmFI	GGGAC	1 cut(s)	339
BsnI	GGCC	1 cut(s)	303
Bso31I	GGTCTC	1 cut(s)	509
BsoBI	CYCGRG	1 cut(s)	448
Bsp1407I	TGTACA	1 cut(s)	363
Bsp143I	GATC	4 cut(s)	294, 414, 438, 859
BspACI	CCGC	2 cut(s)	288, 617
BspANI	GGCC	1 cut(s)	303
BspCNI	CTCAG	1 cut(s)	468
BspDI	ATCGAT	1 cut(s)	441
BspFNI	CGCG	1 cut(s)	290
BspLI	GGNNCC	1 cut(s)	196
BspPI	GGATC	4 cut(s)	289, 422, 446, 854
BspTNI	GGTCTC	1 cut(s)	509
BsrDI	GCAATG	1 cut(s)	282
BsrFI	RCCGGY	1 cut(s)	550
BsrGI	TGTACA	1 cut(s)	363
BssAI	RCCGGY	1 cut(s)	550
BssECI	CCNNGG	1 cut(s)	298
BssMI	GATC	4 cut(s)	294, 414, 438, 859
Bst4CI	ACNGT	3 cut(s)	568, 757, 851
Bst6I	CTCTTC	2 cut(s)	258, 820
BstAUI	TGTACA	1 cut(s)	363
BstC8I	GCNNGC	3 cut(s)	509, 622, 801
BstDEI	CTNAG	3 cut(s)	86, 455, 690
BstDSI	CCRYGG	1 cut(s)	298
BstF5I	GGATG	4 cut(s)	261, 565, 661, 723
BstFNI	CGCG	1 cut(s)	290
BstHHI	GCGC	1 cut(s)	292
BstKTI	GATC	4 cut(s)	297, 417, 441, 862
BstMAI	GTCTC	2 cut(s)	458, 509
BstMBI	GATC	4 cut(s)	294, 414, 438, 859
BstSFI	CTRYAG	1 cut(s)	432
BstUI	CGCG	1 cut(s)	290
BstV1I	GCAGC	1 cut(s)	7
BstV2I	GAAGAC	1 cut(s)	873
Bsu15I	ATCGAT	1 cut(s)	441
BsuRI	GGCC	1 cut(s)	303
BsuTUI	ATCGAT	1 cut(s)	441
BtgI	CCRYGG	1 cut(s)	298
BtsCI	GGATG	4 cut(s)	261, 565, 661, 723
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	2 cut(s)	366, 753
Cac8I	GCNNGC	3 cut(s)	509, 622, 801
CfoI	GCGC	1 cut(s)	292
Cfr10I	RCCGGY	1 cut(s)	550
Cfr13I	GGNCC	1 cut(s)	195
ClaI	ATCGAT	1 cut(s)	441
CseI	GACGC	1 cut(s)	391
Csp6I	GTAC	2 cut(s)	165, 364
CviAII	CATG	2 cut(s)	512, 520
CviQI	GTAC	2 cut(s)	165, 364
DdeI	CTNAG	3 cut(s)	86, 455, 690
DpnI	GATC	4 cut(s)	296, 416, 440, 861
DpnII	GATC	4 cut(s)	294, 414, 438, 859
DraIII	CACNNNGTG	1 cut(s)	372
Eam1104I	CTCTTC	2 cut(s)	258, 820
EarI	CTCTTC	2 cut(s)	258, 820
Eco31I	GGTCTC	1 cut(s)	509
Eco47I	GGWCC	1 cut(s)	195
Eco88I	CYCGRG	1 cut(s)	448
EcoO109I	RGGNCCY	1 cut(s)	195
EcoRI	GAATTC	1 cut(s)	37
FaeI	CATG	2 cut(s)	515, 523
FaqI	GGGAC	1 cut(s)	339
FatI	CATG	2 cut(s)	511, 519
Fnu4HI	GCNGC	3 cut(s)	21, 288, 618
FokI	GGATG	4 cut(s)	248, 572, 668, 730
Fsp4HI	GCNGC	3 cut(s)	21, 288, 618
FspBI	CTAG	3 cut(s)	42, 123, 582
GlaI	GCGC	1 cut(s)	291
GluI	GCNGC	3 cut(s)	21, 288, 618
GsaI	CCCAGC	1 cut(s)	334
HaeIII	GGCC	1 cut(s)	303
HapII	CCGG	1 cut(s)	551
HgaI	GACGC	1 cut(s)	391
HhaI	GCGC	1 cut(s)	292
Hin1II	CATG	2 cut(s)	515, 523
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HinfI	GANTC	2 cut(s)	451, 665
HpaII	CCGG	1 cut(s)	551
HphI	GGTGA	3 cut(s)	556, 622, 869
Hpy166II	GTNNAC	2 cut(s)	92, 366
Hpy188I	TCNGA	2 cut(s)	51, 878
Hpy188III	TCNNGA	3 cut(s)	34, 464, 863
Hpy8I	GTNNAC	2 cut(s)	92, 366
Hpy99I	CGWCG	1 cut(s)	407
HpyAV	CCTTC	4 cut(s)	92, 192, 258, 778
HpyCH4III	ACNGT	3 cut(s)	568, 757, 851
HpyCH4V	TGCA	2 cut(s)	387, 511
HpyF3I	CTNAG	3 cut(s)	86, 455, 690
Hsp92II	CATG	2 cut(s)	515, 523
HspAI	GCGC	1 cut(s)	290
Kzo9I	GATC	4 cut(s)	294, 414, 438, 859
LmnI	GCTCC	3 cut(s)	227, 528, 578
LpnPI	CCDG	5 cut(s)	47, 294, 344, 420, 564
Lsp1109I	GCAGC	1 cut(s)	7
MaeI	CTAG	3 cut(s)	42, 123, 582
MaeIII	GTNAC	5 cut(s)	316, 679, 751, 757, 841
MalI	GATC	4 cut(s)	296, 416, 440, 861
MboI	GATC	4 cut(s)	294, 414, 438, 859
MboII	GAAGA	5 cut(s)	123, 245, 834, 837, 878
MluCI	AATT	3 cut(s)	37, 139, 475
MlyI	GAGTC	2 cut(s)	460, 674
MseI	TTAA	1 cut(s)	155
MslI	CAYNNNNRTG	1 cut(s)	266
MspI	CCGG	1 cut(s)	551
MvnI	CGCG	1 cut(s)	290
NdeII	GATC	4 cut(s)	294, 414, 438, 859
NlaIII	CATG	2 cut(s)	515, 523
NlaIV	GGNNCC	1 cut(s)	196
NmuCI	GTSAC	2 cut(s)	679, 751
PaeR7I	CTCGAG	1 cut(s)	448
PflFI	GACNNNGTC	1 cut(s)	872
PkrI	GCNGC	3 cut(s)	22, 289, 619
PleI	GAGTC	2 cut(s)	459, 673
PpsI	GAGTC	2 cut(s)	459, 673
PpuMI	RGGWCCY	1 cut(s)	195
Psp5II	RGGWCCY	1 cut(s)	195
PspFI	CCCAGC	1 cut(s)	330
PspN4I	GGNNCC	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	195
PspPPI	RGGWCCY	1 cut(s)	195
PspXI	VCTCGAGB	1 cut(s)	448
PsyI	GACNNNGTC	1 cut(s)	872
RsaI	GTAC	2 cut(s)	166, 365
RsaNI	GTAC	2 cut(s)	165, 364
RseI	CAYNNNNRTG	1 cut(s)	266
SaqAI	TTAA	1 cut(s)	155
SatI	GCNGC	3 cut(s)	21, 288, 618
Sau3AI	GATC	4 cut(s)	294, 414, 438, 859
Sau96I	GGNCC	1 cut(s)	195
ScaI	AGTACT	1 cut(s)	166
SchI	GAGTC	2 cut(s)	460, 674
SfcI	CTRYAG	1 cut(s)	432
Sfr274I	CTCGAG	1 cut(s)	448
SinI	GGWCC	1 cut(s)	195
SlaI	CTCGAG	1 cut(s)	448
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	2 cut(s)	160, 448
SmoI	CTYRAG	2 cut(s)	160, 448
Sse9I	AATT	3 cut(s)	37, 139, 475
SsiI	CCGC	2 cut(s)	288, 617
SspMI	CTAG	3 cut(s)	42, 123, 582
TaaI	ACNGT	3 cut(s)	568, 757, 851
TaqI	TCGA	3 cut(s)	417, 441, 449
TasI	AATT	3 cut(s)	37, 139, 475
TatI	WGTACW	2 cut(s)	164, 363
TauI	GCSGC	2 cut(s)	290, 620
Tru1I	TTAA	1 cut(s)	155
Tru9I	TTAA	1 cut(s)	155
TscAI	CASTG	2 cut(s)	373, 760
TseFI	GTSAC	2 cut(s)	679, 751
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	2 cut(s)	679, 751
TspDTI	ATGAA	2 cut(s)	41, 722
TspGWI	ACGGA	1 cut(s)	341
TspRI	CASTG	2 cut(s)	373, 760
Tth111I	GACNNNGTC	1 cut(s)	872
VpaK11BI	GGWCC	1 cut(s)	195
XapI	RAATTY	1 cut(s)	37
XhoI	CTCGAG	1 cut(s)	448
XspI	CTAG	3 cut(s)	42, 123, 582
ZrmI	AGTACT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.