Rw0G009710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00385
OG0011963
Physical Location & Seq
Forward (+)
216 .. 686
471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G009710.1

Sequence Viewer

Length: 471 bp
ATGGGGATCGAGGAGAGCATAGCTACAGGGATCGATGGCTCGAGTCTCAGCAGTCTTGACAAATGTAATTTGTTGAGCAGATTAGTGTTTTTCTTGGGCTTGCATGAGACCATGCTCCATTGGTGTAGGGTCGTGGTGAAGCCGGTGGTGGATGACACGGTTTTTGGGGGAGCTAGGGAGGAGAGGTGGGTGGAGAGGGGGGTGATGGCGGCGAGCTTTGGTTGGTTGTGGTGGTGGAGGTTGAGGGATGAGATTGAGTCTTTGGTGGTTGTGACTGTGGCTAAGAAGGACTTGTCAATGAATATAGGGATGGCTGACTTTGTTGGTTGGTGGTTGTATTATGTCACTGTAACTATTGGAATGGTTAGAGTTGTGAAGGGTTTTATGTGGCTTGCTATGGTTTTCTTATGTAGAAGAAGAGGAGGAAACAATGTTACGAACATTTATCGTGATCCTGAAGACAAAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.91

Weight (kDa)

6.73

Isoelectric Point (pI)

42.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 209
AclWI GGATC 3 cut(s) 14, 38, 446
AluBI AGCT 3 cut(s) 23, 173, 216
AluI AGCT 3 cut(s) 23, 173, 216
Alw26I GTCTC 2 cut(s) 50, 101
AlwI GGATC 3 cut(s) 14, 38, 446
Ama87I CYCGRG 1 cut(s) 40
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
AsuHPI GGTGA 2 cut(s) 148, 214
AvaI CYCGRG 1 cut(s) 40
BbsI GAAGAC 1 cut(s) 465
BccI CCATC 3 cut(s) 29, 199, 304
BcoDI GTCTC 2 cut(s) 50, 101
BfaI CTAG 1 cut(s) 174
BfmI CTRYAG 1 cut(s) 24
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
BmeT110I CYCGRG 1 cut(s) 40
BpiI GAAGAC 1 cut(s) 465
Bsa29I ATCGAT 1 cut(s) 33
BsaI GGTCTC 1 cut(s) 101
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bse118I RCCGGY 1 cut(s) 142
BseCI ATCGAT 1 cut(s) 33
BseGI GGATG 3 cut(s) 157, 253, 315
BseMII CTCAG 1 cut(s) 61
BseRI GAGGAG 3 cut(s) 26, 194, 435
BshVI ATCGAT 1 cut(s) 33
BsiHKCI CYCGRG 1 cut(s) 40
BsiSI CCGG 1 cut(s) 143
BsmAI GTCTC 2 cut(s) 50, 101
Bso31I GGTCTC 1 cut(s) 101
BsoBI CYCGRG 1 cut(s) 40
Bsp143I GATC 3 cut(s) 6, 30, 451
BspACI CCGC 1 cut(s) 209
BspCNI CTCAG 1 cut(s) 60
BspDI ATCGAT 1 cut(s) 33
BspPI GGATC 3 cut(s) 14, 38, 446
BspTNI GGTCTC 1 cut(s) 101
BsrFI RCCGGY 1 cut(s) 142
BssAI RCCGGY 1 cut(s) 142
BssMI GATC 3 cut(s) 6, 30, 451
Bst4CI ACNGT 3 cut(s) 160, 277, 349
Bst6I CTCTTC 1 cut(s) 412
BstC8I GCNNGC 3 cut(s) 101, 214, 393
BstDEI CTNAG 2 cut(s) 47, 282
BstF5I GGATG 3 cut(s) 157, 253, 315
BstKTI GATC 3 cut(s) 9, 33, 454
BstMAI GTCTC 2 cut(s) 50, 101
BstMBI GATC 3 cut(s) 6, 30, 451
BstSFI CTRYAG 1 cut(s) 24
BstV2I GAAGAC 1 cut(s) 465
Bsu15I ATCGAT 1 cut(s) 33
BsuTUI ATCGAT 1 cut(s) 33
BtsCI GGATG 3 cut(s) 157, 253, 315
BtsIMutI CAGTG 1 cut(s) 345
Cac8I GCNNGC 3 cut(s) 101, 214, 393
Cfr10I RCCGGY 1 cut(s) 142
ClaI ATCGAT 1 cut(s) 33
CviAII CATG 2 cut(s) 104, 112
CviJI RGCY 9 cut(s) 23, 39, 99, 142, 173, 216, 281, 314, 391
CviKI_1 RGCY 9 cut(s) 23, 39, 99, 142, 173, 216, 281, 314, 391
DdeI CTNAG 2 cut(s) 47, 282
DpnI GATC 3 cut(s) 8, 32, 453
DpnII GATC 3 cut(s) 6, 30, 451
Eam1104I CTCTTC 1 cut(s) 412
EarI CTCTTC 1 cut(s) 412
Eco31I GGTCTC 1 cut(s) 101
Eco88I CYCGRG 1 cut(s) 40
FaeI CATG 2 cut(s) 107, 115
FaiI YATR 8 cut(s) 20, 105, 113, 305, 342, 386, 398, 409
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FatI CATG 2 cut(s) 103, 111
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 3 cut(s) 164, 260, 322
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 1 cut(s) 174
GluI GCNGC 1 cut(s) 210
HapII CCGG 1 cut(s) 143
Hin1II CATG 2 cut(s) 107, 115
HinfI GANTC 2 cut(s) 43, 257
HpaII CCGG 1 cut(s) 143
HphI GGTGA 2 cut(s) 148, 214
Hpy188I TCNGA 1 cut(s) 470
Hpy188III TCNNGA 3 cut(s) 56, 449, 455
HpyAV CCTTC 2 cut(s) 280, 370
HpyCH4III ACNGT 3 cut(s) 160, 277, 349
HpyCH4V TGCA 1 cut(s) 103
HpyF3I CTNAG 2 cut(s) 47, 282
Hsp92II CATG 2 cut(s) 107, 115
Kzo9I GATC 3 cut(s) 6, 30, 451
LmnI GCTCC 2 cut(s) 120, 170
LpnPI CCDG 2 cut(s) 12, 156
MaeI CTAG 1 cut(s) 174
MaeIII GTNAC 4 cut(s) 271, 343, 349, 433
MalI GATC 3 cut(s) 8, 32, 453
MboI GATC 3 cut(s) 6, 30, 451
MboII GAAGA 3 cut(s) 426, 429, 470
MluCI AATT 1 cut(s) 67
MlyI GAGTC 2 cut(s) 52, 266
MnlI CCTC 8 cut(s) 4, 172, 177, 189, 231, 237, 413, 416
MspI CCGG 1 cut(s) 143
NdeII GATC 3 cut(s) 6, 30, 451
NlaIII CATG 2 cut(s) 107, 115
NmuCI GTSAC 2 cut(s) 271, 343
PaeR7I CTCGAG 1 cut(s) 40
PflFI GACNNNGTC 1 cut(s) 464
PkrI GCNGC 1 cut(s) 211
PleI GAGTC 2 cut(s) 51, 265
PpsI GAGTC 2 cut(s) 51, 265
PspXI VCTCGAGB 1 cut(s) 40
PsyI GACNNNGTC 1 cut(s) 464
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 3 cut(s) 6, 30, 451
SchI GAGTC 2 cut(s) 52, 266
SetI ASST 5 cut(s) 25, 175, 188, 218, 242
SfcI CTRYAG 1 cut(s) 24
Sfr274I CTCGAG 1 cut(s) 40
SlaI CTCGAG 1 cut(s) 40
SmlI CTYRAG 1 cut(s) 40
SmoI CTYRAG 1 cut(s) 40
Sse9I AATT 1 cut(s) 67
SsiI CCGC 1 cut(s) 209
SspMI CTAG 1 cut(s) 174
TaaI ACNGT 3 cut(s) 160, 277, 349
TaqI TCGA 3 cut(s) 9, 33, 41
TasI AATT 1 cut(s) 67
TauI GCSGC 1 cut(s) 212
TscAI CASTG 1 cut(s) 352
TseFI GTSAC 2 cut(s) 271, 343
Tsp45I GTSAC 2 cut(s) 271, 343
TspDTI ATGAA 1 cut(s) 314
TspRI CASTG 1 cut(s) 352
Tth111I GACNNNGTC 1 cut(s) 464
XhoI CTCGAG 1 cut(s) 40
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.