AT2G47360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011963
Physical Location & Seq
Forward (+)
19437648 .. 19438920
1273 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G47360.1

Sequence Viewer

Length: 912 bp
ATGAGTTTCGCCGGCGGAAAGTGGCGGAAAGAGGCGGAGCAGCTGGTGGTTAAGCCTTTCCGGCTGGTGACAACAACTCTCCTCAGCCTTCTCCTTCCTCTCTCTTTCCTCCTCCTTAGTCGTCTCTCTTCAGCTTCTTTCCTCTTCTCCTTAACCAAATCTCAGCCGCAAACAGAGTCATCATTCTTCGTCTTCTCTCTGTTTCTTCGCGCGAATCCGGCGATCGTATACGCTGTCGTTTCGTCAATAAGCGTTTACACTCTAGTTCTTGGCTTAACCACAAAGATCACAGCTACAGATCCAAAGCATTCGATTGCCTTTTATCCACATGTCAGCATCGCGTGGCTTACACTCTTCCTTGTTCAAATCTCCGTCGGTATAGGCCTCGAAACAACGATCTCCAACGGTTTAATCATCGGAAGCGAACGCAATTTCTTGAGCAGGCTTGTGTTTTTCTTTGGTCTTCATGAGGTGATGCTTCTGTGGTATCGAGTGATCGTGAGACCGGTGGTGGATAACACGTTGTTAGGAGGAGAAGACGGTCAACGAAGAGAAGAGACGGTGGTGGAGAGGGTGGCTTTGGCCGTTAGCTGTGGGACCTTGTGGTGGTGGAAGCTTCGAGATGAAGTAGAGGCTTTGGTTGGTGTGGCAGAGGCTAAAAGAGCATTGTTGTTGTTATTACCAATTGATGGTAATGTCAACGTTAGTTTTGATGTGGGAACAGTTGATTTTGTGAATTGGTGGCTATATTATATGGTTGTGACGATTGGTATGGTTAGGATCATTAAAGGGTCTTTGTGGTTTGGGATGATTTTGCTTTTCGAACAAGGTAGTAGAAGAAGAAATCCACGTGGAATTCCTACTGCTTCTTCTACTCTTCATTTTGATGATCAAGGTGACAATAAAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

303

Amino Acids

33.97

Weight (kDa)

9.23

Isoelectric Point (pI)

35.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 689
AccI GTMKAC 1 cut(s) 228
AccII CGCG 3 cut(s) 210, 212, 341
AciI CCGC 4 cut(s) 15, 25, 35, 167
AclI AACGTT 1 cut(s) 702
AclWI GGATC 2 cut(s) 293, 788
AcoI YGGCCR 1 cut(s) 582
AcsI RAATTY 1 cut(s) 855
AcuI CTGAAG 1 cut(s) 114
AcvI CACGTG 1 cut(s) 851
AfiI CCNNNNNNNGG 2 cut(s) 606, 689
AflIII ACRYGT 2 cut(s) 328, 519
AgeI ACCGGT 1 cut(s) 505
AgsI TTSAA 1 cut(s) 365
AluBI AGCT 5 cut(s) 43, 134, 293, 591, 616
AluI AGCT 5 cut(s) 43, 134, 293, 591, 616
Alw26I GTCTC 3 cut(s) 128, 496, 551
AlwI GGATC 2 cut(s) 293, 788
AoxI GGCC 2 cut(s) 382, 582
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 855
AsiGI ACCGGT 1 cut(s) 505
AspLEI GCGC 1 cut(s) 212
AspS9I GGNCC 1 cut(s) 597
AsuHPI GGTGA 3 cut(s) 79, 484, 908
AsuII TTCGAA 1 cut(s) 822
AvaII GGWCC 1 cut(s) 597
BbrPI CACGTG 1 cut(s) 851
BbsI GAAGAC 3 cut(s) 184, 455, 543
BbvCI CCTCAGC 1 cut(s) 83
BbvI GCAGC 1 cut(s) 52
BccI CCATC 1 cut(s) 683
BceAI ACGGC 1 cut(s) 569
BclI TGATCA 1 cut(s) 889
BcoDI GTCTC 3 cut(s) 128, 496, 551
BfaI CTAG 1 cut(s) 263
BfmI CTRYAG 1 cut(s) 294
BglI GCCNNNNNGGC 1 cut(s) 61
BisI GCNGC 2 cut(s) 41, 167
BlsI GCNGC 2 cut(s) 42, 168
Bme18I GGWCC 1 cut(s) 597
BmgT120I GGNCC 1 cut(s) 597
BmiI GGNNCC 1 cut(s) 598
BmsI GCATC 2 cut(s) 345, 465
BpiI GAAGAC 3 cut(s) 184, 455, 543
Bpu10I CCTNAGC 1 cut(s) 83
Bpu14I TTCGAA 1 cut(s) 822
BpuEI CTTGAG 1 cut(s) 457
BsaAI YACGTR 1 cut(s) 851
BsaI GGTCTC 1 cut(s) 496
BsaWI WCCGGW 1 cut(s) 505
Bsc4I CCNNNNNNNGG 2 cut(s) 606, 689
Bse118I RCCGGY 2 cut(s) 11, 505
BseGI GGATG 1 cut(s) 813
BseLI CCNNNNNNNGG 2 cut(s) 606, 689
BseMII CTCAG 2 cut(s) 97, 176
BseRI GAGGAG 3 cut(s) 71, 101, 546
BseXI GCAGC 1 cut(s) 52
Bsh1236I CGCG 3 cut(s) 210, 212, 341
Bsh1285I CGRYCG 1 cut(s) 225
BshFI GGCC 2 cut(s) 384, 584
BshTI ACCGGT 1 cut(s) 505
BsiEI CGRYCG 1 cut(s) 225
BsiSI CCGG 4 cut(s) 12, 61, 218, 506
BslFI GGGAC 1 cut(s) 610
BslI CCNNNNNNNGG 2 cut(s) 606, 689
BsmAI GTCTC 3 cut(s) 128, 496, 551
BsmBI CGTCTC 2 cut(s) 128, 551
BsmFI GGGAC 1 cut(s) 610
BsmI GAATGC 1 cut(s) 307
BsnI GGCC 2 cut(s) 384, 584
Bso31I GGTCTC 1 cut(s) 496
Bsp119I TTCGAA 1 cut(s) 822
Bsp143I GATC 7 cut(s) 222, 285, 298, 396, 495, 780, 889
BspACI CCGC 4 cut(s) 15, 25, 35, 167
BspANI GGCC 2 cut(s) 384, 584
BspCNI CTCAG 2 cut(s) 96, 175
BspFNI CGCG 3 cut(s) 210, 212, 341
BspHI TCATGA 1 cut(s) 466
BspLI GGNNCC 1 cut(s) 598
BspPI GGATC 2 cut(s) 293, 788
BspT104I TTCGAA 1 cut(s) 822
BspTNI GGTCTC 1 cut(s) 496
BsrFI RCCGGY 2 cut(s) 11, 505
BssAI RCCGGY 2 cut(s) 11, 505
BssMI GATC 7 cut(s) 222, 285, 298, 396, 495, 780, 889
BssNAI GTATAC 1 cut(s) 229
Bst1107I GTATAC 1 cut(s) 229
Bst4CI ACNGT 4 cut(s) 407, 542, 562, 724
Bst6I CTCTTC 6 cut(s) 133, 149, 359, 544, 549, 882
BstBAI YACGTR 1 cut(s) 851
BstBI TTCGAA 1 cut(s) 822
BstC8I GCNNGC 2 cut(s) 13, 443
BstDEI CTNAG 3 cut(s) 83, 116, 162
BstF5I GGATG 1 cut(s) 813
BstFNI CGCG 3 cut(s) 210, 212, 341
BstHHI GCGC 1 cut(s) 212
BstKTI GATC 7 cut(s) 225, 288, 301, 399, 498, 783, 892
BstMAI GTCTC 3 cut(s) 128, 496, 551
BstMBI GATC 7 cut(s) 222, 285, 298, 396, 495, 780, 889
BstMCI CGRYCG 1 cut(s) 225
BstMWI GCNNNNNNNGC 3 cut(s) 61, 218, 662
BstNSI RCATGY 1 cut(s) 332
BstSFI CTRYAG 1 cut(s) 294
BstUI CGCG 3 cut(s) 210, 212, 341
BstV1I GCAGC 1 cut(s) 52
BstV2I GAAGAC 3 cut(s) 184, 455, 543
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BstZ17I GTATAC 1 cut(s) 229
BsuRI GGCC 2 cut(s) 384, 584
BtgZI GCGATG 1 cut(s) 322
BtsCI GGATG 1 cut(s) 813
Cac8I GCNNGC 2 cut(s) 13, 443
CciI TCATGA 1 cut(s) 466
CfoI GCGC 1 cut(s) 212
Cfr10I RCCGGY 2 cut(s) 11, 505
Cfr13I GGNCC 1 cut(s) 597
CspAI ACCGGT 1 cut(s) 505
CviAII CATG 2 cut(s) 329, 467
DdeI CTNAG 3 cut(s) 83, 116, 162
DpnI GATC 7 cut(s) 224, 287, 300, 398, 497, 782, 891
DpnII GATC 7 cut(s) 222, 285, 298, 396, 495, 780, 889
EaeI YGGCCR 1 cut(s) 582
Eam1104I CTCTTC 6 cut(s) 133, 149, 359, 544, 549, 882
EarI CTCTTC 6 cut(s) 133, 149, 359, 544, 549, 882
EciI GGCGGA 3 cut(s) 30, 40, 50
Eco147I AGGCCT 1 cut(s) 384
Eco31I GGTCTC 1 cut(s) 496
Eco47I GGWCC 1 cut(s) 597
Eco57I CTGAAG 1 cut(s) 114
Eco72I CACGTG 1 cut(s) 851
EcoO109I RGGNCCY 1 cut(s) 597
EcoRI GAATTC 1 cut(s) 855
Esp3I CGTCTC 2 cut(s) 128, 551
FaeI CATG 2 cut(s) 332, 470
FaiI YATR 8 cut(s) 229, 330, 380, 468, 748, 753, 755, 773
FaqI GGGAC 1 cut(s) 610
FatI CATG 2 cut(s) 328, 466
FbaI TGATCA 1 cut(s) 889
FblI GTMKAC 1 cut(s) 228
Fnu4HI GCNGC 2 cut(s) 41, 167
FokI GGATG 1 cut(s) 820
Fsp4HI GCNGC 2 cut(s) 41, 167
FspBI CTAG 1 cut(s) 263
GlaI GCGC 1 cut(s) 211
GluI GCNGC 2 cut(s) 41, 167
HaeIII GGCC 2 cut(s) 384, 584
HapII CCGG 4 cut(s) 12, 61, 218, 506
HhaI GCGC 1 cut(s) 212
Hin1II CATG 2 cut(s) 332, 470
Hin6I GCGC 1 cut(s) 210
HinP1I GCGC 1 cut(s) 210
HincII GTYRAC 2 cut(s) 545, 700
HindII GTYRAC 2 cut(s) 545, 700
HindIII AAGCTT 1 cut(s) 614
HinfI GANTC 2 cut(s) 176, 214
HpaII CCGG 4 cut(s) 12, 61, 218, 506
HphI GGTGA 3 cut(s) 79, 484, 908
Hpy166II GTNNAC 4 cut(s) 229, 256, 545, 700
Hpy188I TCNGA 1 cut(s) 419
Hpy188III TCNNGA 4 cut(s) 436, 467, 499, 620
Hpy8I GTNNAC 4 cut(s) 229, 256, 545, 700
Hpy99I CGWCG 1 cut(s) 377
HpyAV CCTTC 2 cut(s) 98, 104
HpyCH4III ACNGT 4 cut(s) 407, 542, 562, 724
HpyCH4IV ACGT 3 cut(s) 521, 702, 850
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 218, 662
HpyF3I CTNAG 3 cut(s) 83, 116, 162
HpySE526I ACGT 3 cut(s) 521, 702, 850
Hsp92II CATG 2 cut(s) 332, 470
HspAI GCGC 1 cut(s) 210
KroI GCCGGC 1 cut(s) 11
KroNI GCCGGC 1 cut(s) 13
Ksp22I TGATCA 1 cut(s) 889
Kzo9I GATC 7 cut(s) 222, 285, 298, 396, 495, 780, 889
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 7 cut(s) 25, 29, 50, 74, 231, 427, 519
Lsp1109I GCAGC 1 cut(s) 52
LweI GCATC 2 cut(s) 345, 465
MaeI CTAG 1 cut(s) 263
MaeII ACGT 3 cut(s) 521, 702, 850
MaeIII GTNAC 3 cut(s) 67, 760, 896
MalI GATC 7 cut(s) 224, 287, 300, 398, 497, 782, 891
MboI GATC 7 cut(s) 222, 285, 298, 396, 495, 780, 889
MfeI CAATTG 1 cut(s) 684
MflI RGATCY 1 cut(s) 298
MluCI AATT 4 cut(s) 430, 684, 736, 855
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 426
MreI CGCCGGCG 1 cut(s) 11
MroNI GCCGGC 1 cut(s) 11
MseI TTAA 5 cut(s) 51, 152, 275, 410, 786
MslI CAYNNNNRTG 1 cut(s) 885
MspA1I CMGCKG 1 cut(s) 43
MspI CCGG 4 cut(s) 12, 61, 218, 506
MunI CAATTG 1 cut(s) 684
Mva1269I GAATGC 1 cut(s) 307
MvnI CGCG 3 cut(s) 210, 212, 341
MwoI GCNNNNNNNGC 3 cut(s) 61, 218, 662
NaeI GCCGGC 1 cut(s) 13
NdeII GATC 7 cut(s) 222, 285, 298, 396, 495, 780, 889
NgoMIV GCCGGC 1 cut(s) 11
NlaIII CATG 2 cut(s) 332, 470
NlaIV GGNNCC 1 cut(s) 598
NmuCI GTSAC 3 cut(s) 67, 760, 896
NspI RCATGY 1 cut(s) 332
NspV TTCGAA 1 cut(s) 822
PagI TCATGA 1 cut(s) 466
PceI AGGCCT 1 cut(s) 384
PciI ACATGT 1 cut(s) 328
PctI GAATGC 1 cut(s) 307
PdiI GCCGGC 1 cut(s) 13
PfeI GAWTC 1 cut(s) 214
PflMI CCANNNNNTGG 1 cut(s) 689
PinAI ACCGGT 1 cut(s) 505
PkrI GCNGC 2 cut(s) 42, 168
Ple19I CGATCG 1 cut(s) 225
PleI GAGTC 1 cut(s) 184
PmaCI CACGTG 1 cut(s) 851
PmlI CACGTG 1 cut(s) 851
PpsI GAGTC 1 cut(s) 184
Ppu21I YACGTR 1 cut(s) 851
PpuMI RGGWCCY 1 cut(s) 597
PscI ACATGT 1 cut(s) 328
Psp1406I AACGTT 1 cut(s) 702
Psp5II RGGWCCY 1 cut(s) 597
PspCI CACGTG 1 cut(s) 851
PspN4I GGNNCC 1 cut(s) 598
PspPI GGNCC 1 cut(s) 597
PspPPI RGGWCCY 1 cut(s) 597
PsuI RGATCY 1 cut(s) 298
PvuI CGATCG 1 cut(s) 225
PvuII CAGCTG 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 885
SaqAI TTAA 5 cut(s) 51, 152, 275, 410, 786
SatI GCNGC 2 cut(s) 41, 167
Sau3AI GATC 7 cut(s) 222, 285, 298, 396, 495, 780, 889
Sau96I GGNCC 1 cut(s) 597
SchI GAGTC 1 cut(s) 185
SfaNI GCATC 2 cut(s) 345, 465
SfcI CTRYAG 1 cut(s) 294
SfuI TTCGAA 1 cut(s) 822
SgrAI CRCCGGYG 1 cut(s) 11
SinI GGWCC 1 cut(s) 597
SmiMI CAYNNNNRTG 1 cut(s) 885
SmlI CTYRAG 1 cut(s) 436
SmoI CTYRAG 1 cut(s) 436
Sse9I AATT 4 cut(s) 430, 684, 736, 855
SseBI AGGCCT 1 cut(s) 384
SsiI CCGC 4 cut(s) 15, 25, 35, 167
SspMI CTAG 1 cut(s) 263
StuI AGGCCT 1 cut(s) 384
TaaI ACNGT 4 cut(s) 407, 542, 562, 724
TaiI ACGT 3 cut(s) 524, 705, 853
TaqI TCGA 5 cut(s) 311, 387, 490, 619, 822
TasI AATT 4 cut(s) 430, 684, 736, 855
TauI GCSGC 1 cut(s) 169
TfiI GAWTC 1 cut(s) 214
Tru1I TTAA 5 cut(s) 51, 152, 275, 410, 786
Tru9I TTAA 5 cut(s) 51, 152, 275, 410, 786
TseFI GTSAC 3 cut(s) 67, 760, 896
TseI GCWGC 1 cut(s) 40
Tsp45I GTSAC 3 cut(s) 67, 760, 896
TspDTI ATGAA 3 cut(s) 455, 639, 869
TspGWI ACGGA 1 cut(s) 361
Van91I CCANNNNNTGG 1 cut(s) 689
VpaK11BI GGWCC 1 cut(s) 597
XapI RAATTY 1 cut(s) 855
XceI RCATGY 1 cut(s) 332
XmiI GTMKAC 1 cut(s) 228
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.