RchiOBHm_Chr7g0241061

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0011963
Physical Location & Seq
Forward (+)
67023583 .. 67024320
738 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21605

Sequence Viewer

Length: 738 bp
ATGGGTGGGCAACAAAAGGCTATGAACCTCCTGAATTGTAGCTTTCTGAAACAGCCTTTCCACATTCTTACAATAACCCTCCTAAGCTTATTGCTTCCCCTCTCTTTTCTCCTCCTATCTGGACTTTCTTGTGCCAATTGCTACTATCTCTTAACCTTGAGTACTATTGATAGTCCTCATCCTCTTTTCGGGTCCTCTACCTATTTTTGTGATTTCTGCTCCACTCTATTCCTATACTCAACCCCTTCTCTTCACTACATCCTTGTGTCCATTGTCAGCATTGCCGCGCTTATCCACGGCCTAACAGGTGAAGTTACCATTATAGCCCAGCCTCCATCTCCCATTTTCCGTCCCTGTTTGTACACTGCATGGATTTTCCTATGCACATTAGAAGTCTGCGTCGGTTTGGGGATCGAGGAAAGCATAGCTACGGGGATCGATGGCTCGAGTCTCAGCAGTCTTGACAAATGTAATTTGTTGAGCAGAGTAGTGTTTTTCTTGGGCTTTCATGAGAACATGCTCCATTGGTGTAGGGTCGTGGTGAAGCCGGTGGTGGATGACACGGTTTTTGGGGGTGCTAGGGAGGAGAGGTGGGTGGAAAGGGGGGTGATGGCGGCGACCTTTGGTTGGTTGTGGTGGTGGAGGTTGAGGGATGAGATTGAGTCTTTGGTGGTTATGACTATGGCTAAGAAAGAGTTGTCAATGAATATAGGGATGACTGACTTTGTTGGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

245

Amino Acids

27.39

Weight (kDa)

5.63

Isoelectric Point (pI)

46.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 287
AciI CCGC 2 cut(s) 285, 614
AclWI GGATC 2 cut(s) 419, 443
AfaI GTAC 2 cut(s) 163, 362
AfiI CCNNNNNNNGG 2 cut(s) 188, 627
AluBI AGCT 3 cut(s) 42, 87, 428
AluI AGCT 3 cut(s) 42, 87, 428
Alw26I GTCTC 1 cut(s) 455
AlwI GGATC 2 cut(s) 419, 443
Ama87I CYCGRG 1 cut(s) 445
AoxI GGCC 1 cut(s) 298
ArsI GACNNNNNNTTYG 2 cut(s) 551, 583
AspLEI GCGC 1 cut(s) 289
AspS9I GGNCC 1 cut(s) 192
AsuHPI GGTGA 3 cut(s) 320, 553, 619
AvaI CYCGRG 1 cut(s) 445
AvaII GGWCC 1 cut(s) 192
BccI CCATC 3 cut(s) 343, 434, 604
BceAI ACGGC 1 cut(s) 313
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 1 cut(s) 579
BisI GCNGC 2 cut(s) 285, 615
BlsI GCNGC 2 cut(s) 286, 616
BmcAI AGTACT 1 cut(s) 163
Bme18I GGWCC 1 cut(s) 192
BmeT110I CYCGRG 1 cut(s) 445
BmgT120I GGNCC 1 cut(s) 192
BmiI GGNNCC 1 cut(s) 193
Bpu10I CCTNAGC 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 178
Bsa29I ATCGAT 1 cut(s) 438
BsaJI CCNNGG 1 cut(s) 295
BsaXI ACNNNNNCTCC 2 cut(s) 575, 605
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 627
Bse118I RCCGGY 1 cut(s) 547
Bse3DI GCAATG 1 cut(s) 279
BseCI ATCGAT 1 cut(s) 438
BseDI CCNNGG 1 cut(s) 295
BseGI GGATG 5 cut(s) 178, 258, 562, 658, 720
BseLI CCNNNNNNNGG 2 cut(s) 188, 627
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 1 cut(s) 466
BseRI GAGGAG 2 cut(s) 101, 599
BseYI CCCAGC 1 cut(s) 327
Bsh1236I CGCG 1 cut(s) 287
BshFI GGCC 1 cut(s) 300
BshVI ATCGAT 1 cut(s) 438
BsiHKCI CYCGRG 1 cut(s) 445
BsiSI CCGG 1 cut(s) 548
BslFI GGGAC 1 cut(s) 336
BslI CCNNNNNNNGG 2 cut(s) 188, 627
BsmAI GTCTC 1 cut(s) 455
BsmFI GGGAC 1 cut(s) 336
BsnI GGCC 1 cut(s) 300
BsoBI CYCGRG 1 cut(s) 445
Bsp1407I TGTACA 1 cut(s) 360
Bsp143I GATC 2 cut(s) 411, 435
BspACI CCGC 2 cut(s) 285, 614
BspANI GGCC 1 cut(s) 300
BspCNI CTCAG 1 cut(s) 465
BspDI ATCGAT 1 cut(s) 438
BspFNI CGCG 1 cut(s) 287
BspHI TCATGA 1 cut(s) 508
BspLI GGNNCC 1 cut(s) 193
BspPI GGATC 2 cut(s) 419, 443
BsrDI GCAATG 1 cut(s) 279
BsrFI RCCGGY 1 cut(s) 547
BsrGI TGTACA 1 cut(s) 360
BssAI RCCGGY 1 cut(s) 547
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 2 cut(s) 411, 435
Bst4CI ACNGT 1 cut(s) 565
Bst6I CTCTTC 1 cut(s) 255
BstAUI TGTACA 1 cut(s) 360
BstDEI CTNAG 3 cut(s) 83, 452, 687
BstDSI CCRYGG 1 cut(s) 295
BstF5I GGATG 5 cut(s) 178, 258, 562, 658, 720
BstFNI CGCG 1 cut(s) 287
BstHHI GCGC 1 cut(s) 289
BstKTI GATC 2 cut(s) 414, 438
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 2 cut(s) 411, 435
BstNSI RCATGY 1 cut(s) 520
BstUI CGCG 1 cut(s) 287
Bsu15I ATCGAT 1 cut(s) 438
BsuRI GGCC 1 cut(s) 300
BsuTUI ATCGAT 1 cut(s) 438
BtgI CCRYGG 1 cut(s) 295
BtsCI GGATG 5 cut(s) 178, 258, 562, 658, 720
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 1 cut(s) 363
CciI TCATGA 1 cut(s) 508
CfoI GCGC 1 cut(s) 289
Cfr10I RCCGGY 1 cut(s) 547
Cfr13I GGNCC 1 cut(s) 192
ClaI ATCGAT 1 cut(s) 438
CseI GACGC 1 cut(s) 388
Csp6I GTAC 2 cut(s) 162, 361
CviAII CATG 3 cut(s) 369, 509, 517
CviQI GTAC 2 cut(s) 162, 361
DdeI CTNAG 3 cut(s) 83, 452, 687
DpnI GATC 2 cut(s) 413, 437
DpnII GATC 2 cut(s) 411, 435
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 192
Eco88I CYCGRG 1 cut(s) 445
EcoO109I RGGNCCY 1 cut(s) 192
FaeI CATG 3 cut(s) 372, 512, 520
FaqI GGGAC 1 cut(s) 336
FatI CATG 3 cut(s) 368, 508, 516
Fnu4HI GCNGC 2 cut(s) 285, 615
FokI GGATG 5 cut(s) 165, 245, 569, 665, 727
Fsp4HI GCNGC 2 cut(s) 285, 615
FspBI CTAG 1 cut(s) 579
GlaI GCGC 1 cut(s) 288
GluI GCNGC 2 cut(s) 285, 615
GsaI CCCAGC 1 cut(s) 331
HaeIII GGCC 1 cut(s) 300
HapII CCGG 1 cut(s) 548
HgaI GACGC 1 cut(s) 388
HhaI GCGC 1 cut(s) 289
Hin1II CATG 3 cut(s) 372, 512, 520
Hin6I GCGC 1 cut(s) 287
HinP1I GCGC 1 cut(s) 287
HindIII AAGCTT 1 cut(s) 85
HinfI GANTC 2 cut(s) 448, 662
HpaII CCGG 1 cut(s) 548
HphI GGTGA 3 cut(s) 320, 553, 619
Hpy166II GTNNAC 1 cut(s) 363
Hpy188I TCNGA 1 cut(s) 48
Hpy188III TCNNGA 4 cut(s) 31, 120, 461, 509
Hpy8I GTNNAC 1 cut(s) 363
Hpy99I CGWCG 1 cut(s) 404
HpyAV CCTTC 1 cut(s) 255
HpyCH4III ACNGT 1 cut(s) 565
HpyCH4V TGCA 2 cut(s) 368, 384
HpyF3I CTNAG 3 cut(s) 83, 452, 687
Hsp92II CATG 3 cut(s) 372, 512, 520
HspAI GCGC 1 cut(s) 287
Kzo9I GATC 2 cut(s) 411, 435
LmnI GCTCC 2 cut(s) 224, 525
LpnPI CCDG 6 cut(s) 44, 105, 291, 341, 367, 561
MaeI CTAG 1 cut(s) 579
MaeIII GTNAC 1 cut(s) 313
MalI GATC 2 cut(s) 413, 437
MboI GATC 2 cut(s) 411, 435
MboII GAAGA 1 cut(s) 242
MfeI CAATTG 1 cut(s) 136
MluCI AATT 3 cut(s) 34, 136, 472
MlyI GAGTC 2 cut(s) 457, 671
MseI TTAA 1 cut(s) 152
MslI CAYNNNNRTG 1 cut(s) 263
MspI CCGG 1 cut(s) 548
MunI CAATTG 1 cut(s) 136
MvnI CGCG 1 cut(s) 287
NdeII GATC 2 cut(s) 411, 435
NlaIII CATG 3 cut(s) 372, 512, 520
NlaIV GGNNCC 1 cut(s) 193
NspI RCATGY 1 cut(s) 520
PaeR7I CTCGAG 1 cut(s) 445
PagI TCATGA 1 cut(s) 508
PkrI GCNGC 2 cut(s) 286, 616
PleI GAGTC 2 cut(s) 456, 670
PpsI GAGTC 2 cut(s) 456, 670
PpuMI RGGWCCY 1 cut(s) 192
Psp5II RGGWCCY 1 cut(s) 192
PspFI CCCAGC 1 cut(s) 327
PspN4I GGNNCC 1 cut(s) 193
PspPI GGNCC 1 cut(s) 192
PspPPI RGGWCCY 1 cut(s) 192
PspXI VCTCGAGB 1 cut(s) 445
RsaI GTAC 2 cut(s) 163, 362
RsaNI GTAC 2 cut(s) 162, 361
RseI CAYNNNNRTG 1 cut(s) 263
SaqAI TTAA 1 cut(s) 152
SatI GCNGC 2 cut(s) 285, 615
Sau3AI GATC 2 cut(s) 411, 435
Sau96I GGNCC 1 cut(s) 192
ScaI AGTACT 1 cut(s) 163
SchI GAGTC 2 cut(s) 457, 671
Sfr274I CTCGAG 1 cut(s) 445
SinI GGWCC 1 cut(s) 192
SlaI CTCGAG 1 cut(s) 445
SmiMI CAYNNNNRTG 1 cut(s) 263
SmlI CTYRAG 2 cut(s) 157, 445
SmoI CTYRAG 2 cut(s) 157, 445
Sse9I AATT 3 cut(s) 34, 136, 472
SsiI CCGC 2 cut(s) 285, 614
SspMI CTAG 1 cut(s) 579
TaaI ACNGT 1 cut(s) 565
TaqI TCGA 3 cut(s) 414, 438, 446
TasI AATT 3 cut(s) 34, 136, 472
TatI WGTACW 2 cut(s) 161, 360
TauI GCSGC 2 cut(s) 287, 617
Tru1I TTAA 1 cut(s) 152
Tru9I TTAA 1 cut(s) 152
TscAI CASTG 1 cut(s) 370
TspDTI ATGAA 3 cut(s) 38, 497, 719
TspGWI ACGGA 1 cut(s) 338
TspRI CASTG 1 cut(s) 370
VpaK11BI GGWCC 1 cut(s) 192
XceI RCATGY 1 cut(s) 520
XhoI CTCGAG 1 cut(s) 445
XspI CTAG 1 cut(s) 579
ZrmI AGTACT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.