Prupe.8G266000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0011963
Physical Location & Seq
Forward (+)
22265054 .. 22265914
861 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G266000.1

Sequence Viewer

Length: 861 bp
ATGAGTTTGACTAGCTTTCTAAAACAACCTTTCCACACTCTCACAATCACCCTTCTCAGTCTATTGCTTCCCCTCTCATTCCTCCTCCTGGCCAGGCTTTCTTGCGCTAACTATCTCTTAAGCTTAAGCTTCACCCCTCTTCATCCTGATCCTAATTATAGCACCACCATTACTAGTAATACTCCTTTTTCTCTGTTCCGCTACGCCACCCCTTCTCTTCTCTACATTCTTGTTTCCATTGTCAGCACAGCCGCTTTCATCCATTGCCTAACAGGTAAAATTACCATCATAACCGAGTTCCCAACTCCCATTTTCCGTCCCCGTTTGTACACTGCCTGGATTTTCCTATGCACATTACAAGTCTGCGTTGGTTTGGGAATCGAAGGGAGCATAGCCGCGGGGATCAATGGCGCTACTTTCGGCGGCGTTGATGAGAGAATATGTCTGCTGAGCAGAGCAATATTTTTCCTCGGCTTGCATGAGACGATGCTCCATTGGTGCAGAGTTGTGGTGAAGCCGGTGGTGGACGATACGGTTTTTGGTGCGGCTAGAGGGGAAAAATGGGTTGAGAGGGTGGCAGTGGCTGCGAGCTTTGGTTGTTTATGGTGGTGGAGGTTGAGGGACGAGGTGGAGTCTTTGGTCGTTGTAGCTAAGGCCAAAAGAGAGCTGTCAATGGGCATAGGTGTGGCTGACTTTGTTGGTTGGTGGTTATATTACCTTTCTGTAACTATTGGAATGGTTAGAGTGGTGAAGGGTGTTATGTGGCTTTCCATGGTTTTGTTATGTAAGAGGAGATCAGGAGGAGGCAACTTCGCTAACAGTTGCGCAGAAGATCATGATCTTCAAGACAACAAGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

287

Amino Acids

31.79

Weight (kDa)

8.74

Isoelectric Point (pI)

32.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 854
Acc16I TGCGCA 1 cut(s) 826
AccII CGCG 1 cut(s) 398
AciI CCGC 6 cut(s) 199, 252, 396, 398, 423, 545
AclWI GGATC 2 cut(s) 143, 410
AcoI YGGCCR 1 cut(s) 90
AfaI GTAC 1 cut(s) 329
AfiI CCNNNNNNNGG 1 cut(s) 88
AflII CTTAAG 2 cut(s) 118, 124
AgsI TTSAA 1 cut(s) 845
AhlI ACTAGT 1 cut(s) 173
AjnI CCWGG 3 cut(s) 87, 92, 335
AluBI AGCT 6 cut(s) 15, 123, 129, 591, 650, 667
AluI AGCT 6 cut(s) 15, 123, 129, 591, 650, 667
Alw26I GTCTC 1 cut(s) 476
AlwI GGATC 2 cut(s) 143, 410
AlwNI CAGNNNCTG 1 cut(s) 584
AoxI GGCC 2 cut(s) 90, 654
ApeKI GCWGC 1 cut(s) 584
AspLEI GCGC 3 cut(s) 107, 413, 827
AsuHPI GGTGA 4 cut(s) 40, 124, 523, 760
BalI TGGCCA 1 cut(s) 92
BbvI GCAGC 1 cut(s) 571
BccI CCATC 1 cut(s) 293
BciT130I CCWGG 3 cut(s) 89, 94, 337
BcoDI GTCTC 1 cut(s) 476
BcuI ACTAGT 1 cut(s) 173
BfaI CTAG 3 cut(s) 12, 174, 549
BfoI RGCGCY 1 cut(s) 414
BfrI CTTAAG 2 cut(s) 118, 124
BisI GCNGC 5 cut(s) 252, 396, 424, 546, 585
BlpI GCTNAGC 1 cut(s) 449
BlsI GCNGC 5 cut(s) 253, 397, 425, 547, 586
Bme1390I CCNGG 3 cut(s) 89, 94, 337
BmrFI CCNGG 3 cut(s) 89, 94, 337
BmsI GCATC 1 cut(s) 477
Bpu10I CCTNAGC 1 cut(s) 651
Bpu1102I GCTNAGC 1 cut(s) 449
BsaBI GATNNNNATC 1 cut(s) 837
BsaJI CCNNGG 3 cut(s) 396, 469, 771
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse118I RCCGGY 1 cut(s) 517
Bse3DI GCAATG 1 cut(s) 262
Bse8I GATNNNNATC 1 cut(s) 837
BseBI CCWGG 3 cut(s) 89, 94, 337
BseDI CCNNGG 3 cut(s) 396, 469, 771
BseGI GGATG 2 cut(s) 142, 258
BseJI GATNNNNATC 1 cut(s) 837
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMI GCAATG 1 cut(s) 262
BseMII CTCAG 2 cut(s) 70, 440
BseRI GAGGAG 3 cut(s) 74, 805, 816
BseXI GCAGC 1 cut(s) 571
BsgI GTGCAG 1 cut(s) 520
Bsh1236I CGCG 1 cut(s) 398
BshFI GGCC 2 cut(s) 92, 656
BsiSI CCGG 1 cut(s) 518
BslFI GGGAC 2 cut(s) 303, 635
BslI CCNNNNNNNGG 1 cut(s) 88
BsmAI GTCTC 1 cut(s) 476
BsmBI CGTCTC 1 cut(s) 476
BsmFI GGGAC 2 cut(s) 303, 635
BsnI GGCC 2 cut(s) 92, 656
Bsp1407I TGTACA 1 cut(s) 327
Bsp143I GATC 5 cut(s) 148, 402, 794, 832, 838
Bsp1720I GCTNAGC 1 cut(s) 449
Bsp19I CCATGG 1 cut(s) 771
BspACI CCGC 6 cut(s) 199, 252, 396, 398, 423, 545
BspANI GGCC 2 cut(s) 92, 656
BspCNI CTCAG 2 cut(s) 69, 441
BspFNI CGCG 1 cut(s) 398
BspHI TCATGA 1 cut(s) 835
BspPI GGATC 2 cut(s) 143, 410
BspTI CTTAAG 2 cut(s) 118, 124
BsrDI GCAATG 1 cut(s) 262
BsrFI RCCGGY 1 cut(s) 517
BsrGI TGTACA 1 cut(s) 327
BssAI RCCGGY 1 cut(s) 517
BssECI CCNNGG 3 cut(s) 396, 469, 771
BssMI GATC 5 cut(s) 148, 402, 794, 832, 838
BssT1I CCWWGG 1 cut(s) 771
Bst2UI CCWGG 3 cut(s) 89, 94, 337
Bst4CI ACNGT 2 cut(s) 535, 821
Bst6I CTCTTC 2 cut(s) 144, 222
BstAFI CTTAAG 2 cut(s) 118, 124
BstAPI GCANNNNNTGC 1 cut(s) 584
BstAUI TGTACA 1 cut(s) 327
BstC8I GCNNGC 2 cut(s) 476, 589
BstDEI CTNAG 3 cut(s) 56, 449, 651
BstDSI CCRYGG 2 cut(s) 396, 771
BstF5I GGATG 2 cut(s) 142, 258
BstFNI CGCG 1 cut(s) 398
BstH2I RGCGCY 1 cut(s) 414
BstHHI GCGC 3 cut(s) 107, 413, 827
BstKTI GATC 5 cut(s) 151, 405, 797, 835, 841
BstMAI GTCTC 1 cut(s) 476
BstMBI GATC 5 cut(s) 148, 402, 794, 832, 838
BstMWI GCNNNNNNNGC 1 cut(s) 584
BstNI CCWGG 3 cut(s) 89, 94, 337
BstSCI CCNGG 3 cut(s) 87, 92, 335
BstUI CGCG 1 cut(s) 398
BstV1I GCAGC 1 cut(s) 571
BsuRI GGCC 2 cut(s) 92, 656
BtgI CCRYGG 2 cut(s) 396, 771
BtsCI GGATG 2 cut(s) 142, 258
BtsI GCAGTG 2 cut(s) 330, 585
BtsIMutI CAGTG 2 cut(s) 330, 585
Cac8I GCNNGC 2 cut(s) 476, 589
CaiI CAGNNNCTG 1 cut(s) 584
CciI TCATGA 1 cut(s) 835
CfoI GCGC 3 cut(s) 107, 413, 827
Cfr10I RCCGGY 1 cut(s) 517
Cfr42I CCGCGG 1 cut(s) 399
Csp6I GTAC 1 cut(s) 328
CviAII CATG 3 cut(s) 479, 772, 836
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 3 cut(s) 56, 449, 651
DpnI GATC 5 cut(s) 150, 404, 796, 834, 840
DpnII GATC 5 cut(s) 148, 402, 794, 832, 838
DrdI GACNNNNNNGTC 1 cut(s) 854
DseDI GACNNNNNNGTC 1 cut(s) 854
EaeI YGGCCR 1 cut(s) 90
Eam1104I CTCTTC 2 cut(s) 144, 222
EarI CTCTTC 2 cut(s) 144, 222
Eco130I CCWWGG 1 cut(s) 771
EcoRII CCWGG 3 cut(s) 87, 92, 335
EcoT14I CCWWGG 1 cut(s) 771
ErhI CCWWGG 1 cut(s) 771
Esp3I CGTCTC 1 cut(s) 476
FaeI CATG 3 cut(s) 482, 775, 839
FaqI GGGAC 2 cut(s) 303, 635
FatI CATG 3 cut(s) 478, 771, 835
FauI CCCGC 1 cut(s) 391
Fnu4HI GCNGC 5 cut(s) 252, 396, 424, 546, 585
FokI GGATG 2 cut(s) 129, 245
Fsp4HI GCNGC 5 cut(s) 252, 396, 424, 546, 585
FspBI CTAG 3 cut(s) 12, 174, 549
FspI TGCGCA 1 cut(s) 826
GlaI GCGC 3 cut(s) 106, 412, 826
GluI GCNGC 5 cut(s) 252, 396, 424, 546, 585
HaeII RGCGCY 1 cut(s) 414
HaeIII GGCC 2 cut(s) 92, 656
HapII CCGG 1 cut(s) 518
HhaI GCGC 3 cut(s) 107, 413, 827
Hin1II CATG 3 cut(s) 482, 775, 839
Hin6I GCGC 3 cut(s) 105, 411, 825
HinP1I GCGC 3 cut(s) 105, 411, 825
HindIII AAGCTT 2 cut(s) 121, 127
HinfI GANTC 2 cut(s) 378, 632
HpaII CCGG 1 cut(s) 518
HphI GGTGA 4 cut(s) 40, 124, 523, 760
Hpy166II GTNNAC 2 cut(s) 330, 526
Hpy188III TCNNGA 4 cut(s) 146, 798, 836, 845
Hpy8I GTNNAC 2 cut(s) 330, 526
HpyAV CCTTC 4 cut(s) 62, 222, 377, 745
HpyCH4III ACNGT 2 cut(s) 535, 821
HpyCH4V TGCA 3 cut(s) 351, 478, 501
HpyF10VI GCNNNNNNNGC 1 cut(s) 584
HpyF3I CTNAG 3 cut(s) 56, 449, 651
Hsp92II CATG 3 cut(s) 482, 775, 839
HspAI GCGC 3 cut(s) 105, 411, 825
KspI CCGCGG 1 cut(s) 399
Kzo9I GATC 5 cut(s) 148, 402, 794, 832, 838
LmnI GCTCC 2 cut(s) 387, 495
Lsp1109I GCAGC 1 cut(s) 571
LweI GCATC 1 cut(s) 477
MaeI CTAG 3 cut(s) 12, 174, 549
MaeIII GTNAC 1 cut(s) 724
MalI GATC 5 cut(s) 150, 404, 796, 834, 840
MboI GATC 5 cut(s) 148, 402, 794, 832, 838
MboII GAAGA 4 cut(s) 131, 209, 833, 842
MlsI TGGCCA 1 cut(s) 92
MluCI AATT 2 cut(s) 154, 279
MluNI TGGCCA 1 cut(s) 92
MlyI GAGTC 1 cut(s) 641
Mox20I TGGCCA 1 cut(s) 92
MscI TGGCCA 1 cut(s) 92
MseI TTAA 2 cut(s) 119, 125
MslI CAYNNNNRTG 1 cut(s) 683
Msp20I TGGCCA 1 cut(s) 92
MspA1I CMGCKG 1 cut(s) 398
MspCI CTTAAG 2 cut(s) 118, 124
MspI CCGG 1 cut(s) 518
MspR9I CCNGG 3 cut(s) 89, 94, 337
MvaI CCWGG 3 cut(s) 89, 94, 337
MvnI CGCG 1 cut(s) 398
MwoI GCNNNNNNNGC 1 cut(s) 584
NcoI CCATGG 1 cut(s) 771
NdeII GATC 5 cut(s) 148, 402, 794, 832, 838
NlaIII CATG 3 cut(s) 482, 775, 839
NmeAIII GCCGAG 1 cut(s) 450
NsbI TGCGCA 1 cut(s) 826
PagI TCATGA 1 cut(s) 835
PfeI GAWTC 1 cut(s) 378
PkrI GCNGC 5 cut(s) 253, 397, 425, 547, 586
PleI GAGTC 1 cut(s) 640
PpsI GAGTC 1 cut(s) 640
Psp6I CCWGG 3 cut(s) 87, 92, 335
PspGI CCWGG 3 cut(s) 87, 92, 335
PstNI CAGNNNCTG 1 cut(s) 584
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
RseI CAYNNNNRTG 1 cut(s) 683
SacII CCGCGG 1 cut(s) 399
SaqAI TTAA 2 cut(s) 119, 125
SatI GCNGC 5 cut(s) 252, 396, 424, 546, 585
Sau3AI GATC 5 cut(s) 148, 402, 794, 832, 838
SchI GAGTC 1 cut(s) 641
ScrFI CCNGG 3 cut(s) 89, 94, 337
SfaNI GCATC 1 cut(s) 477
Sfr303I CCGCGG 1 cut(s) 399
SgrBI CCGCGG 1 cut(s) 399
SmiMI CAYNNNNRTG 1 cut(s) 683
SmlI CTYRAG 2 cut(s) 118, 124
SmoI CTYRAG 2 cut(s) 118, 124
SpeI ACTAGT 1 cut(s) 173
Sse9I AATT 2 cut(s) 154, 279
SsiI CCGC 6 cut(s) 199, 252, 396, 398, 423, 545
SspI AATATT 1 cut(s) 462
SspMI CTAG 3 cut(s) 12, 174, 549
StyD4I CCNGG 3 cut(s) 87, 92, 335
StyI CCWWGG 1 cut(s) 771
TaaI ACNGT 2 cut(s) 535, 821
TaqI TCGA 1 cut(s) 381
TasI AATT 2 cut(s) 154, 279
TatI WGTACW 1 cut(s) 327
TauI GCSGC 4 cut(s) 254, 398, 426, 548
TfiI GAWTC 1 cut(s) 378
Tru1I TTAA 2 cut(s) 119, 125
Tru9I TTAA 2 cut(s) 119, 125
TscAI CASTG 2 cut(s) 337, 585
TseI GCWGC 1 cut(s) 584
TspDTI ATGAA 2 cut(s) 131, 247
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 2 cut(s) 337, 585
Vha464I CTTAAG 2 cut(s) 118, 124
XspI CTAG 3 cut(s) 12, 174, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.