Rmu_sc0003187.1_g000007

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003187.1
Physical Location & Seq
Reverse (-)
29314 .. 32609
3296 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003187.1_g000007.1.cds

Sequence Viewer

Length: 1275 bp
atgggtgggcaacaaaaggctatgaacctcctgaattctagctttctgaaacagcctttccacattctcacaataacccttctaagcttattgcttcccctctcttttctcctcctatctaggctttcttctgccaattactactatctcttaaccttgagtactactgatagtcctccttctcctttagggtcctctacctatttttgtgatttctgctcctctctattcctatactcaaccccttctcttctctacatccttgtgtccattgtcagcattgccgcgcttatccacggtctaacaggtaaagttaccattatagcccagcctccatctcccattttccgtccccgtttgtacaccgcgtggattttcctatgcacattacaagtctgcgtcggtatggggatcgaggagagcatagctacagggatcgatggctcgagtctcagcagtcttgacaaatgtaatttgttgagcagattagtgtttttcttgggcttgcatgagaccatgctccattggtgtagggtcgtggtgaagccggtggtggatgacacagtttttgggggagctagggaggagaggtgggtggagaggggggtgatggcggcgagctttggttggttgtggtggtggaggttgagggatgagattgagtctttggtggttgtgactgtggctaagaaggacttgtcaatgaatatagggatggctgactttgttggttggtggttgtattatgtcactgtaactattggaatggttagagttgtgaagggttttatgtggcttgctatggctgacatagcgacgataaggcttcttgtggtgcggcgtggtaccacaggctgctggacgtgcgtgctggtgcagacgaggcgcgttagggagacttggtggatccgggttagtgtatcgggttgtctaggaggttcgcactggcttggaattcctggactcttgatttctggtcttgatcgagcaatgaacggcgtgcagttggcaacaaggatgagaaaatgctcttgccagccattttgccttggtctgggcctaggtcttatgggcccatttgatgagagaaatcatcggagaccttgtcggactccggtgaccagtggtcgcccaggcactccggtgaccggtcgcaggattcctgtcaccgaactagtgaccggtgagagaaatcatcggagaccttgtcggactccggtgaccagtggtcgcccaggtactccggtgacaggaatcctgcgaccggtcacctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

424

Amino Acids

47.1

Weight (kDa)

9.71

Isoelectric Point (pI)

45.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 845
AccB1I GGYRCC 1 cut(s) 845
AccII CGCG 3 cut(s) 287, 368, 888
AciI CCGC 4 cut(s) 285, 366, 614, 838
AclWI GGATC 4 cut(s) 419, 443, 901, 914
AcsI RAATTY 2 cut(s) 34, 954
AdeI CACNNNGTG 1 cut(s) 369
AfaI GTAC 4 cut(s) 163, 362, 847, 1240
AfiI CCNNNNNNNGG 5 cut(s) 1054, 1148, 1155, 1250, 1264
AgeI ACCGGT 3 cut(s) 1148, 1181, 1264
AhdI GACNNNNNGTC 2 cut(s) 1125, 1227
AhlI ACTAGT 1 cut(s) 1174
AjiI CACGTC 1 cut(s) 864
AjnI CCWGG 3 cut(s) 958, 1132, 1234
AleI CACNNNNGTG 1 cut(s) 1142
AluBI AGCT 5 cut(s) 42, 87, 428, 578, 621
AluI AGCT 5 cut(s) 42, 87, 428, 578, 621
Alw26I GTCTC 5 cut(s) 455, 506, 890, 1093, 1195
AlwI GGATC 4 cut(s) 419, 443, 901, 914
Ama87I CYCGRG 1 cut(s) 445
AoxI GGCC 2 cut(s) 1057, 1072
ApaI GGGCCC 1 cut(s) 1076
ApeKI GCWGC 1 cut(s) 855
ApoI RAATTY 2 cut(s) 34, 954
ArsI GACNNNNNNTTYG 2 cut(s) 551, 583
AsiGI ACCGGT 3 cut(s) 1148, 1181, 1264
Asp718I GGTACC 1 cut(s) 845
AspA2I CCTAGG 1 cut(s) 1060
AspLEI GCGC 2 cut(s) 289, 888
AspS9I GGNCC 4 cut(s) 192, 1057, 1072, 1073
AsuC2I CCSGG 1 cut(s) 911
AsuHPI GGTGA 9 cut(s) 553, 619, 1129, 1156, 1159, 1196, 1231, 1258, 1261
AvaI CYCGRG 1 cut(s) 445
AvaII GGWCC 1 cut(s) 192
AvrII CCTAGG 1 cut(s) 1060
BaeGI GKGCMC 1 cut(s) 1076
BaeI ACNNNNGTAYC 2 cut(s) 1230, 1263
BamHI GGATCC 1 cut(s) 906
BanI GGYRCC 1 cut(s) 845
BanII GRGCYC 1 cut(s) 1076
BbvI GCAGC 1 cut(s) 842
BccI CCATC 4 cut(s) 343, 434, 604, 709
BceAI ACGGC 1 cut(s) 1012
BciT130I CCWGG 3 cut(s) 960, 1134, 1236
BcnI CCSGG 1 cut(s) 911
BcoDI GTCTC 5 cut(s) 455, 506, 890, 1093, 1195
BcuI ACTAGT 1 cut(s) 1174
BfaI CTAG 6 cut(s) 39, 120, 579, 932, 1061, 1175
BfmI CTRYAG 1 cut(s) 429
BisI GCNGC 4 cut(s) 285, 615, 839, 856
BlnI CCTAGG 1 cut(s) 1060
BlsI GCNGC 4 cut(s) 286, 616, 840, 857
BmcAI AGTACT 1 cut(s) 163
Bme1390I CCNGG 4 cut(s) 911, 960, 1134, 1236
Bme18I GGWCC 1 cut(s) 192
BmeRI GACNNNNNGTC 2 cut(s) 1125, 1227
BmeT110I CYCGRG 1 cut(s) 445
BmgBI CACGTC 1 cut(s) 864
BmgT120I GGNCC 4 cut(s) 192, 1057, 1072, 1073
BmiI GGNNCC 4 cut(s) 193, 847, 908, 1074
BmrFI CCNGG 4 cut(s) 911, 960, 1134, 1236
BpuEI CTTGAG 1 cut(s) 178
BpuMI CCSGG 1 cut(s) 911
Bsa29I ATCGAT 1 cut(s) 438
BsaI GGTCTC 3 cut(s) 506, 1093, 1195
BsaJI CCNNGG 5 cut(s) 295, 1048, 1060, 1132, 1234
BsaWI WCCGGW 7 cut(s) 1114, 1141, 1148, 1181, 1216, 1243, 1264
BsaXI ACNNNNNCTCC 8 cut(s) 575, 605, 887, 917, 1090, 1120, 1192, 1222
Bsc4I CCNNNNNNNGG 5 cut(s) 1054, 1148, 1155, 1250, 1264
Bse118I RCCGGY 4 cut(s) 547, 1148, 1181, 1264
Bse1I ACTGG 3 cut(s) 950, 1122, 1224
Bse3DI GCAATG 2 cut(s) 279, 996
BseBI CCWGG 3 cut(s) 960, 1134, 1236
BseCI ATCGAT 1 cut(s) 438
BseDI CCNNGG 5 cut(s) 295, 1048, 1060, 1132, 1234
BseGI GGATG 5 cut(s) 258, 562, 658, 720, 1023
BseLI CCNNNNNNNGG 5 cut(s) 1054, 1148, 1155, 1250, 1264
BseMI GCAATG 2 cut(s) 279, 996
BseMII CTCAG 1 cut(s) 466
BseNI ACTGG 3 cut(s) 950, 1122, 1224
BseRI GAGGAG 4 cut(s) 101, 211, 431, 599
BseSI GKGCMC 1 cut(s) 1076
BseXI GCAGC 1 cut(s) 842
BseYI CCCAGC 1 cut(s) 327
BsgI GTGCAG 2 cut(s) 896, 1022
Bsh1236I CGCG 3 cut(s) 287, 368, 888
Bsh1285I CGRYCG 2 cut(s) 1153, 1265
BshFI GGCC 2 cut(s) 1059, 1074
BshNI GGYRCC 1 cut(s) 845
BshTI ACCGGT 3 cut(s) 1148, 1181, 1264
BshVI ATCGAT 1 cut(s) 438
BsiEI CGRYCG 2 cut(s) 1153, 1265
BsiHKCI CYCGRG 1 cut(s) 445
BsiSI CCGG 9 cut(s) 548, 910, 1115, 1142, 1149, 1182, 1217, 1244, 1265
BslFI GGGAC 1 cut(s) 336
BslI CCNNNNNNNGG 5 cut(s) 1054, 1148, 1155, 1250, 1264
BsmAI GTCTC 5 cut(s) 455, 506, 890, 1093, 1195
BsmFI GGGAC 1 cut(s) 336
BsnI GGCC 2 cut(s) 1059, 1074
Bso31I GGTCTC 3 cut(s) 506, 1093, 1195
BsoBI CYCGRG 1 cut(s) 445
Bsp120I GGGCCC 1 cut(s) 1072
Bsp1286I GDGCHC 1 cut(s) 1076
Bsp1407I TGTACA 1 cut(s) 360
Bsp143I GATC 4 cut(s) 411, 435, 906, 982
BspACI CCGC 4 cut(s) 285, 366, 614, 838
BspANI GGCC 2 cut(s) 1059, 1074
BspCNI CTCAG 1 cut(s) 465
BspDI ATCGAT 1 cut(s) 438
BspFNI CGCG 3 cut(s) 287, 368, 888
BspLI GGNNCC 4 cut(s) 193, 847, 908, 1074
BspPI GGATC 4 cut(s) 419, 443, 901, 914
BspT107I GGYRCC 1 cut(s) 845
BspTNI GGTCTC 3 cut(s) 506, 1093, 1195
BsrDI GCAATG 2 cut(s) 279, 996
BsrFI RCCGGY 4 cut(s) 547, 1148, 1181, 1264
BsrGI TGTACA 1 cut(s) 360
BsrI ACTGG 3 cut(s) 950, 1122, 1224
BssAI RCCGGY 4 cut(s) 547, 1148, 1181, 1264
BssECI CCNNGG 5 cut(s) 295, 1048, 1060, 1132, 1234
BssMI GATC 4 cut(s) 411, 435, 906, 982
BssT1I CCWWGG 2 cut(s) 1048, 1060
Bst2UI CCWGG 3 cut(s) 960, 1134, 1236
Bst4CI ACNGT 4 cut(s) 299, 565, 682, 754
Bst6I CTCTTC 1 cut(s) 255
BstAUI TGTACA 1 cut(s) 360
BstC8I GCNNGC 6 cut(s) 506, 619, 798, 869, 1001, 1037
BstDEI CTNAG 3 cut(s) 83, 452, 687
BstDSI CCRYGG 1 cut(s) 295
BstEII GGTNACC 4 cut(s) 1117, 1144, 1219, 1267
BstF5I GGATG 5 cut(s) 258, 562, 658, 720, 1023
BstFNI CGCG 3 cut(s) 287, 368, 888
BstHHI GCGC 2 cut(s) 289, 888
BstKTI GATC 4 cut(s) 414, 438, 909, 985
BstMAI GTCTC 5 cut(s) 455, 506, 890, 1093, 1195
BstMBI GATC 4 cut(s) 411, 435, 906, 982
BstMCI CGRYCG 2 cut(s) 1153, 1265
BstMWI GCNNNNNNNGC 3 cut(s) 812, 864, 883
BstNI CCWGG 3 cut(s) 960, 1134, 1236
BstPI GGTNACC 4 cut(s) 1117, 1144, 1219, 1267
BstSCI CCNGG 4 cut(s) 909, 958, 1132, 1234
BstSFI CTRYAG 1 cut(s) 429
BstSLI GKGCMC 1 cut(s) 1076
BstUI CGCG 3 cut(s) 287, 368, 888
BstV1I GCAGC 1 cut(s) 842
BstX2I RGATCY 1 cut(s) 906
BstYI RGATCY 1 cut(s) 906
Bsu15I ATCGAT 1 cut(s) 438
BsuRI GGCC 2 cut(s) 1059, 1074
BsuTUI ATCGAT 1 cut(s) 438
BtgI CCRYGG 1 cut(s) 295
BtrI CACGTC 1 cut(s) 864
BtsCI GGATG 5 cut(s) 258, 562, 658, 720, 1023
BtsIMutI CAGTG 4 cut(s) 750, 943, 1129, 1231
Cac8I GCNNGC 6 cut(s) 506, 619, 798, 869, 1001, 1037
CfoI GCGC 2 cut(s) 289, 888
Cfr10I RCCGGY 4 cut(s) 547, 1148, 1181, 1264
Cfr13I GGNCC 4 cut(s) 192, 1057, 1072, 1073
ClaI ATCGAT 1 cut(s) 438
CseI GACGC 1 cut(s) 388
Csp6I GTAC 4 cut(s) 162, 361, 846, 1239
CspAI ACCGGT 3 cut(s) 1148, 1181, 1264
CviAII CATG 2 cut(s) 509, 517
CviQI GTAC 4 cut(s) 162, 361, 846, 1239
DdeI CTNAG 3 cut(s) 83, 452, 687
DpnI GATC 4 cut(s) 413, 437, 908, 984
DpnII GATC 4 cut(s) 411, 435, 906, 982
DraIII CACNNNGTG 1 cut(s) 369
DriI GACNNNNNGTC 2 cut(s) 1125, 1227
Eam1104I CTCTTC 1 cut(s) 255
Eam1105I GACNNNNNGTC 2 cut(s) 1125, 1227
EarI CTCTTC 1 cut(s) 255
Eco130I CCWWGG 2 cut(s) 1048, 1060
Eco24I GRGCYC 1 cut(s) 1076
Eco31I GGTCTC 3 cut(s) 506, 1093, 1195
Eco47I GGWCC 1 cut(s) 192
Eco88I CYCGRG 1 cut(s) 445
Eco91I GGTNACC 4 cut(s) 1117, 1144, 1219, 1267
EcoO109I RGGNCCY 1 cut(s) 192
EcoO65I GGTNACC 4 cut(s) 1117, 1144, 1219, 1267
EcoRI GAATTC 2 cut(s) 34, 954
EcoRII CCWGG 3 cut(s) 958, 1132, 1234
EcoT14I CCWWGG 2 cut(s) 1048, 1060
EcoT38I GRGCYC 1 cut(s) 1076
ErhI CCWWGG 2 cut(s) 1048, 1060
FaeI CATG 2 cut(s) 512, 520
FalI AAGNNNNNCTT 2 cut(s) 680, 712
FaqI GGGAC 1 cut(s) 336
FatI CATG 2 cut(s) 508, 516
Fnu4HI GCNGC 4 cut(s) 285, 615, 839, 856
FokI GGATG 5 cut(s) 245, 569, 665, 727, 1030
FriOI GRGCYC 1 cut(s) 1076
Fsp4HI GCNGC 4 cut(s) 285, 615, 839, 856
FspBI CTAG 6 cut(s) 39, 120, 579, 932, 1061, 1175
GlaI GCGC 2 cut(s) 288, 887
GluI GCNGC 4 cut(s) 285, 615, 839, 856
GsaI CCCAGC 1 cut(s) 331
HaeIII GGCC 2 cut(s) 1059, 1074
HapII CCGG 9 cut(s) 548, 910, 1115, 1142, 1149, 1182, 1217, 1244, 1265
HgaI GACGC 1 cut(s) 388
HhaI GCGC 2 cut(s) 289, 888
Hin1II CATG 2 cut(s) 512, 520
Hin6I GCGC 2 cut(s) 287, 886
HinP1I GCGC 2 cut(s) 287, 886
HindIII AAGCTT 1 cut(s) 85
HinfI GANTC 7 cut(s) 448, 662, 963, 1111, 1159, 1213, 1254
HpaII CCGG 9 cut(s) 548, 910, 1115, 1142, 1149, 1182, 1217, 1244, 1265
HphI GGTGA 9 cut(s) 553, 619, 1129, 1156, 1159, 1196, 1231, 1258, 1261
Hpy166II GTNNAC 1 cut(s) 363
Hpy188I TCNGA 5 cut(s) 48, 1098, 1110, 1200, 1212
Hpy188III TCNNGA 4 cut(s) 31, 461, 967, 980
Hpy8I GTNNAC 1 cut(s) 363
Hpy99I CGWCG 2 cut(s) 404, 820
HpyAV CCTTC 5 cut(s) 89, 189, 255, 685, 775
HpyCH4III ACNGT 4 cut(s) 299, 565, 682, 754
HpyCH4IV ACGT 1 cut(s) 863
HpyCH4V TGCA 4 cut(s) 384, 508, 877, 1003
HpyF10VI GCNNNNNNNGC 3 cut(s) 812, 864, 883
HpyF3I CTNAG 3 cut(s) 83, 452, 687
HpySE526I ACGT 1 cut(s) 863
Hsp92II CATG 2 cut(s) 512, 520
HspAI GCGC 2 cut(s) 287, 886
KpnI GGTACC 1 cut(s) 849
Kzo9I GATC 4 cut(s) 411, 435, 906, 982
LmnI GCTCC 3 cut(s) 224, 525, 575
Lsp1109I GCAGC 1 cut(s) 842
MaeI CTAG 6 cut(s) 39, 120, 579, 932, 1061, 1175
MaeII ACGT 1 cut(s) 863
MalI GATC 4 cut(s) 413, 437, 908, 984
MboI GATC 4 cut(s) 411, 435, 906, 982
MboII GAAGA 2 cut(s) 120, 242
MflI RGATCY 1 cut(s) 906
MhlI GDGCHC 1 cut(s) 1076
MluCI AATT 4 cut(s) 34, 136, 472, 954
MlyI GAGTC 5 cut(s) 457, 671, 957, 1105, 1207
MmeI TCCRAC 2 cut(s) 1088, 1190
MseI TTAA 1 cut(s) 152
MslI CAYNNNNRTG 2 cut(s) 263, 1142
MspI CCGG 9 cut(s) 548, 910, 1115, 1142, 1149, 1182, 1217, 1244, 1265
MspR9I CCNGG 4 cut(s) 911, 960, 1134, 1236
MvaI CCWGG 3 cut(s) 960, 1134, 1236
MvnI CGCG 3 cut(s) 287, 368, 888
MwoI GCNNNNNNNGC 3 cut(s) 812, 864, 883
NciI CCSGG 1 cut(s) 911
NdeII GATC 4 cut(s) 411, 435, 906, 982
NlaIII CATG 2 cut(s) 512, 520
NlaIV GGNNCC 4 cut(s) 193, 847, 908, 1074
NmuCI GTSAC 9 cut(s) 676, 748, 1117, 1144, 1165, 1177, 1219, 1246, 1267
OliI CACNNNNGTG 1 cut(s) 1142
PaeR7I CTCGAG 1 cut(s) 445
PfeI GAWTC 2 cut(s) 1159, 1254
PflFI GACNNNGTC 2 cut(s) 1104, 1206
PfoI TCCNGGA 1 cut(s) 958
PinAI ACCGGT 3 cut(s) 1148, 1181, 1264
PkrI GCNGC 4 cut(s) 286, 616, 840, 857
PleI GAGTC 5 cut(s) 456, 670, 957, 1105, 1207
PpsI GAGTC 5 cut(s) 456, 670, 957, 1105, 1207
PpuMI RGGWCCY 1 cut(s) 192
Psp5II RGGWCCY 1 cut(s) 192
Psp6I CCWGG 3 cut(s) 958, 1132, 1234
PspEI GGTNACC 4 cut(s) 1117, 1144, 1219, 1267
PspFI CCCAGC 1 cut(s) 327
PspGI CCWGG 3 cut(s) 958, 1132, 1234
PspN4I GGNNCC 4 cut(s) 193, 847, 908, 1074
PspOMI GGGCCC 1 cut(s) 1072
PspPI GGNCC 4 cut(s) 192, 1057, 1072, 1073
PspPPI RGGWCCY 1 cut(s) 192
PspXI VCTCGAGB 1 cut(s) 445
PsuI RGATCY 1 cut(s) 906
PsyI GACNNNGTC 2 cut(s) 1104, 1206
RsaI GTAC 4 cut(s) 163, 362, 847, 1240
RsaNI GTAC 4 cut(s) 162, 361, 846, 1239
RseI CAYNNNNRTG 2 cut(s) 263, 1142
SaqAI TTAA 1 cut(s) 152
SatI GCNGC 4 cut(s) 285, 615, 839, 856
Sau3AI GATC 4 cut(s) 411, 435, 906, 982
Sau96I GGNCC 4 cut(s) 192, 1057, 1072, 1073
ScaI AGTACT 1 cut(s) 163
SchI GAGTC 5 cut(s) 457, 671, 957, 1105, 1207
ScrFI CCNGG 4 cut(s) 911, 960, 1134, 1236
SduI GDGCHC 1 cut(s) 1076
SfcI CTRYAG 1 cut(s) 429
Sfr274I CTCGAG 1 cut(s) 445
SinI GGWCC 1 cut(s) 192
SlaI CTCGAG 1 cut(s) 445
SmiMI CAYNNNNRTG 2 cut(s) 263, 1142
SmlI CTYRAG 2 cut(s) 157, 445
SmoI CTYRAG 2 cut(s) 157, 445
SpeI ACTAGT 1 cut(s) 1174
Sse9I AATT 4 cut(s) 34, 136, 472, 954
SsiI CCGC 4 cut(s) 285, 366, 614, 838
SspMI CTAG 6 cut(s) 39, 120, 579, 932, 1061, 1175
StyD4I CCNGG 4 cut(s) 909, 958, 1132, 1234
StyI CCWWGG 2 cut(s) 1048, 1060
TaaI ACNGT 4 cut(s) 299, 565, 682, 754
TaiI ACGT 1 cut(s) 866
TaqI TCGA 4 cut(s) 414, 438, 446, 985
TasI AATT 4 cut(s) 34, 136, 472, 954
TatI WGTACW 2 cut(s) 161, 360
TauI GCSGC 3 cut(s) 287, 617, 841
TfiI GAWTC 2 cut(s) 1159, 1254
Tru1I TTAA 1 cut(s) 152
Tru9I TTAA 1 cut(s) 152
TscAI CASTG 4 cut(s) 757, 950, 1129, 1231
TseFI GTSAC 9 cut(s) 676, 748, 1117, 1144, 1165, 1177, 1219, 1246, 1267
TseI GCWGC 1 cut(s) 855
Tsp45I GTSAC 9 cut(s) 676, 748, 1117, 1144, 1165, 1177, 1219, 1246, 1267
TspDTI ATGAA 3 cut(s) 38, 719, 1007
TspGWI ACGGA 1 cut(s) 338
TspRI CASTG 4 cut(s) 757, 950, 1129, 1231
Tth111I GACNNNGTC 2 cut(s) 1104, 1206
VpaK11BI GGWCC 1 cut(s) 192
XapI RAATTY 2 cut(s) 34, 954
XhoI CTCGAG 1 cut(s) 445
XmaJI CCTAGG 1 cut(s) 1060
XspI CTAG 6 cut(s) 39, 120, 579, 932, 1061, 1175
ZrmI AGTACT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.