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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G02570 AT1G02575 AT2G47360 |
| malus_domestica | MD03G1293400.v1.1 MD03G1293600.v1.1 |
| prunus_persica | Prupe.8G266000_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr7g0241031 RchiOBHm_Chr7g0241061 |
| rosa_laevigata | RLG00000000601 |
| rosa_multiflora | Rmu_sc0003187.1_g000007 |
| rosa_roxburghii | Rroxscaffold_3G00219300 |
| rosa_rugosa | Rorug07G0341900 |
| rosa_samantha | Rh7AG496700 Rh7BG467900 Rh7CG513900 Rh7DG481100 |
| rosa_wichuraiana | Rw0G005800 Rw0G009710 Rw7G041950 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 845 |
| AccB1I | GGYRCC | 1 cut(s) | 845 |
| AccII | CGCG | 3 cut(s) | 287, 368, 888 |
| AciI | CCGC | 4 cut(s) | 285, 366, 614, 838 |
| AclWI | GGATC | 4 cut(s) | 419, 443, 901, 914 |
| AcsI | RAATTY | 2 cut(s) | 34, 954 |
| AdeI | CACNNNGTG | 1 cut(s) | 369 |
| AfaI | GTAC | 4 cut(s) | 163, 362, 847, 1240 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 1054, 1148, 1155, 1250, 1264 |
| AgeI | ACCGGT | 3 cut(s) | 1148, 1181, 1264 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1125, 1227 |
| AhlI | ACTAGT | 1 cut(s) | 1174 |
| AjiI | CACGTC | 1 cut(s) | 864 |
| AjnI | CCWGG | 3 cut(s) | 958, 1132, 1234 |
| AleI | CACNNNNGTG | 1 cut(s) | 1142 |
| AluBI | AGCT | 5 cut(s) | 42, 87, 428, 578, 621 |
| AluI | AGCT | 5 cut(s) | 42, 87, 428, 578, 621 |
| Alw26I | GTCTC | 5 cut(s) | 455, 506, 890, 1093, 1195 |
| AlwI | GGATC | 4 cut(s) | 419, 443, 901, 914 |
| Ama87I | CYCGRG | 1 cut(s) | 445 |
| AoxI | GGCC | 2 cut(s) | 1057, 1072 |
| ApaI | GGGCCC | 1 cut(s) | 1076 |
| ApeKI | GCWGC | 1 cut(s) | 855 |
| ApoI | RAATTY | 2 cut(s) | 34, 954 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 551, 583 |
| AsiGI | ACCGGT | 3 cut(s) | 1148, 1181, 1264 |
| Asp718I | GGTACC | 1 cut(s) | 845 |
| AspA2I | CCTAGG | 1 cut(s) | 1060 |
| AspLEI | GCGC | 2 cut(s) | 289, 888 |
| AspS9I | GGNCC | 4 cut(s) | 192, 1057, 1072, 1073 |
| AsuC2I | CCSGG | 1 cut(s) | 911 |
| AsuHPI | GGTGA | 9 cut(s) | 553, 619, 1129, 1156, 1159, 1196, 1231, 1258, 1261 |
| AvaI | CYCGRG | 1 cut(s) | 445 |
| AvaII | GGWCC | 1 cut(s) | 192 |
| AvrII | CCTAGG | 1 cut(s) | 1060 |
| BaeGI | GKGCMC | 1 cut(s) | 1076 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1230, 1263 |
| BamHI | GGATCC | 1 cut(s) | 906 |
| BanI | GGYRCC | 1 cut(s) | 845 |
| BanII | GRGCYC | 1 cut(s) | 1076 |
| BbvI | GCAGC | 1 cut(s) | 842 |
| BccI | CCATC | 4 cut(s) | 343, 434, 604, 709 |
| BceAI | ACGGC | 1 cut(s) | 1012 |
| BciT130I | CCWGG | 3 cut(s) | 960, 1134, 1236 |
| BcnI | CCSGG | 1 cut(s) | 911 |
| BcoDI | GTCTC | 5 cut(s) | 455, 506, 890, 1093, 1195 |
| BcuI | ACTAGT | 1 cut(s) | 1174 |
| BfaI | CTAG | 6 cut(s) | 39, 120, 579, 932, 1061, 1175 |
| BfmI | CTRYAG | 1 cut(s) | 429 |
| BisI | GCNGC | 4 cut(s) | 285, 615, 839, 856 |
| BlnI | CCTAGG | 1 cut(s) | 1060 |
| BlsI | GCNGC | 4 cut(s) | 286, 616, 840, 857 |
| BmcAI | AGTACT | 1 cut(s) | 163 |
| Bme1390I | CCNGG | 4 cut(s) | 911, 960, 1134, 1236 |
| Bme18I | GGWCC | 1 cut(s) | 192 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1125, 1227 |
| BmeT110I | CYCGRG | 1 cut(s) | 445 |
| BmgBI | CACGTC | 1 cut(s) | 864 |
| BmgT120I | GGNCC | 4 cut(s) | 192, 1057, 1072, 1073 |
| BmiI | GGNNCC | 4 cut(s) | 193, 847, 908, 1074 |
| BmrFI | CCNGG | 4 cut(s) | 911, 960, 1134, 1236 |
| BpuEI | CTTGAG | 1 cut(s) | 178 |
| BpuMI | CCSGG | 1 cut(s) | 911 |
| Bsa29I | ATCGAT | 1 cut(s) | 438 |
| BsaI | GGTCTC | 3 cut(s) | 506, 1093, 1195 |
| BsaJI | CCNNGG | 5 cut(s) | 295, 1048, 1060, 1132, 1234 |
| BsaWI | WCCGGW | 7 cut(s) | 1114, 1141, 1148, 1181, 1216, 1243, 1264 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 575, 605, 887, 917, 1090, 1120, 1192, 1222 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 1054, 1148, 1155, 1250, 1264 |
| Bse118I | RCCGGY | 4 cut(s) | 547, 1148, 1181, 1264 |
| Bse1I | ACTGG | 3 cut(s) | 950, 1122, 1224 |
| Bse3DI | GCAATG | 2 cut(s) | 279, 996 |
| BseBI | CCWGG | 3 cut(s) | 960, 1134, 1236 |
| BseCI | ATCGAT | 1 cut(s) | 438 |
| BseDI | CCNNGG | 5 cut(s) | 295, 1048, 1060, 1132, 1234 |
| BseGI | GGATG | 5 cut(s) | 258, 562, 658, 720, 1023 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 1054, 1148, 1155, 1250, 1264 |
| BseMI | GCAATG | 2 cut(s) | 279, 996 |
| BseMII | CTCAG | 1 cut(s) | 466 |
| BseNI | ACTGG | 3 cut(s) | 950, 1122, 1224 |
| BseRI | GAGGAG | 4 cut(s) | 101, 211, 431, 599 |
| BseSI | GKGCMC | 1 cut(s) | 1076 |
| BseXI | GCAGC | 1 cut(s) | 842 |
| BseYI | CCCAGC | 1 cut(s) | 327 |
| BsgI | GTGCAG | 2 cut(s) | 896, 1022 |
| Bsh1236I | CGCG | 3 cut(s) | 287, 368, 888 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1153, 1265 |
| BshFI | GGCC | 2 cut(s) | 1059, 1074 |
| BshNI | GGYRCC | 1 cut(s) | 845 |
| BshTI | ACCGGT | 3 cut(s) | 1148, 1181, 1264 |
| BshVI | ATCGAT | 1 cut(s) | 438 |
| BsiEI | CGRYCG | 2 cut(s) | 1153, 1265 |
| BsiHKCI | CYCGRG | 1 cut(s) | 445 |
| BsiSI | CCGG | 9 cut(s) | 548, 910, 1115, 1142, 1149, 1182, 1217, 1244, 1265 |
| BslFI | GGGAC | 1 cut(s) | 336 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 1054, 1148, 1155, 1250, 1264 |
| BsmAI | GTCTC | 5 cut(s) | 455, 506, 890, 1093, 1195 |
| BsmFI | GGGAC | 1 cut(s) | 336 |
| BsnI | GGCC | 2 cut(s) | 1059, 1074 |
| Bso31I | GGTCTC | 3 cut(s) | 506, 1093, 1195 |
| BsoBI | CYCGRG | 1 cut(s) | 445 |
| Bsp120I | GGGCCC | 1 cut(s) | 1072 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1076 |
| Bsp1407I | TGTACA | 1 cut(s) | 360 |
| Bsp143I | GATC | 4 cut(s) | 411, 435, 906, 982 |
| BspACI | CCGC | 4 cut(s) | 285, 366, 614, 838 |
| BspANI | GGCC | 2 cut(s) | 1059, 1074 |
| BspCNI | CTCAG | 1 cut(s) | 465 |
| BspDI | ATCGAT | 1 cut(s) | 438 |
| BspFNI | CGCG | 3 cut(s) | 287, 368, 888 |
| BspLI | GGNNCC | 4 cut(s) | 193, 847, 908, 1074 |
| BspPI | GGATC | 4 cut(s) | 419, 443, 901, 914 |
| BspT107I | GGYRCC | 1 cut(s) | 845 |
| BspTNI | GGTCTC | 3 cut(s) | 506, 1093, 1195 |
| BsrDI | GCAATG | 2 cut(s) | 279, 996 |
| BsrFI | RCCGGY | 4 cut(s) | 547, 1148, 1181, 1264 |
| BsrGI | TGTACA | 1 cut(s) | 360 |
| BsrI | ACTGG | 3 cut(s) | 950, 1122, 1224 |
| BssAI | RCCGGY | 4 cut(s) | 547, 1148, 1181, 1264 |
| BssECI | CCNNGG | 5 cut(s) | 295, 1048, 1060, 1132, 1234 |
| BssMI | GATC | 4 cut(s) | 411, 435, 906, 982 |
| BssT1I | CCWWGG | 2 cut(s) | 1048, 1060 |
| Bst2UI | CCWGG | 3 cut(s) | 960, 1134, 1236 |
| Bst4CI | ACNGT | 4 cut(s) | 299, 565, 682, 754 |
| Bst6I | CTCTTC | 1 cut(s) | 255 |
| BstAUI | TGTACA | 1 cut(s) | 360 |
| BstC8I | GCNNGC | 6 cut(s) | 506, 619, 798, 869, 1001, 1037 |
| BstDEI | CTNAG | 3 cut(s) | 83, 452, 687 |
| BstDSI | CCRYGG | 1 cut(s) | 295 |
| BstEII | GGTNACC | 4 cut(s) | 1117, 1144, 1219, 1267 |
| BstF5I | GGATG | 5 cut(s) | 258, 562, 658, 720, 1023 |
| BstFNI | CGCG | 3 cut(s) | 287, 368, 888 |
| BstHHI | GCGC | 2 cut(s) | 289, 888 |
| BstKTI | GATC | 4 cut(s) | 414, 438, 909, 985 |
| BstMAI | GTCTC | 5 cut(s) | 455, 506, 890, 1093, 1195 |
| BstMBI | GATC | 4 cut(s) | 411, 435, 906, 982 |
| BstMCI | CGRYCG | 2 cut(s) | 1153, 1265 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 812, 864, 883 |
| BstNI | CCWGG | 3 cut(s) | 960, 1134, 1236 |
| BstPI | GGTNACC | 4 cut(s) | 1117, 1144, 1219, 1267 |
| BstSCI | CCNGG | 4 cut(s) | 909, 958, 1132, 1234 |
| BstSFI | CTRYAG | 1 cut(s) | 429 |
| BstSLI | GKGCMC | 1 cut(s) | 1076 |
| BstUI | CGCG | 3 cut(s) | 287, 368, 888 |
| BstV1I | GCAGC | 1 cut(s) | 842 |
| BstX2I | RGATCY | 1 cut(s) | 906 |
| BstYI | RGATCY | 1 cut(s) | 906 |
| Bsu15I | ATCGAT | 1 cut(s) | 438 |
| BsuRI | GGCC | 2 cut(s) | 1059, 1074 |
| BsuTUI | ATCGAT | 1 cut(s) | 438 |
| BtgI | CCRYGG | 1 cut(s) | 295 |
| BtrI | CACGTC | 1 cut(s) | 864 |
| BtsCI | GGATG | 5 cut(s) | 258, 562, 658, 720, 1023 |
| BtsIMutI | CAGTG | 4 cut(s) | 750, 943, 1129, 1231 |
| Cac8I | GCNNGC | 6 cut(s) | 506, 619, 798, 869, 1001, 1037 |
| CfoI | GCGC | 2 cut(s) | 289, 888 |
| Cfr10I | RCCGGY | 4 cut(s) | 547, 1148, 1181, 1264 |
| Cfr13I | GGNCC | 4 cut(s) | 192, 1057, 1072, 1073 |
| ClaI | ATCGAT | 1 cut(s) | 438 |
| CseI | GACGC | 1 cut(s) | 388 |
| Csp6I | GTAC | 4 cut(s) | 162, 361, 846, 1239 |
| CspAI | ACCGGT | 3 cut(s) | 1148, 1181, 1264 |
| CviAII | CATG | 2 cut(s) | 509, 517 |
| CviQI | GTAC | 4 cut(s) | 162, 361, 846, 1239 |
| DdeI | CTNAG | 3 cut(s) | 83, 452, 687 |
| DpnI | GATC | 4 cut(s) | 413, 437, 908, 984 |
| DpnII | GATC | 4 cut(s) | 411, 435, 906, 982 |
| DraIII | CACNNNGTG | 1 cut(s) | 369 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1125, 1227 |
| Eam1104I | CTCTTC | 1 cut(s) | 255 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1125, 1227 |
| EarI | CTCTTC | 1 cut(s) | 255 |
| Eco130I | CCWWGG | 2 cut(s) | 1048, 1060 |
| Eco24I | GRGCYC | 1 cut(s) | 1076 |
| Eco31I | GGTCTC | 3 cut(s) | 506, 1093, 1195 |
| Eco47I | GGWCC | 1 cut(s) | 192 |
| Eco88I | CYCGRG | 1 cut(s) | 445 |
| Eco91I | GGTNACC | 4 cut(s) | 1117, 1144, 1219, 1267 |
| EcoO109I | RGGNCCY | 1 cut(s) | 192 |
| EcoO65I | GGTNACC | 4 cut(s) | 1117, 1144, 1219, 1267 |
| EcoRI | GAATTC | 2 cut(s) | 34, 954 |
| EcoRII | CCWGG | 3 cut(s) | 958, 1132, 1234 |
| EcoT14I | CCWWGG | 2 cut(s) | 1048, 1060 |
| EcoT38I | GRGCYC | 1 cut(s) | 1076 |
| ErhI | CCWWGG | 2 cut(s) | 1048, 1060 |
| FaeI | CATG | 2 cut(s) | 512, 520 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 680, 712 |
| FaqI | GGGAC | 1 cut(s) | 336 |
| FatI | CATG | 2 cut(s) | 508, 516 |
| Fnu4HI | GCNGC | 4 cut(s) | 285, 615, 839, 856 |
| FokI | GGATG | 5 cut(s) | 245, 569, 665, 727, 1030 |
| FriOI | GRGCYC | 1 cut(s) | 1076 |
| Fsp4HI | GCNGC | 4 cut(s) | 285, 615, 839, 856 |
| FspBI | CTAG | 6 cut(s) | 39, 120, 579, 932, 1061, 1175 |
| GlaI | GCGC | 2 cut(s) | 288, 887 |
| GluI | GCNGC | 4 cut(s) | 285, 615, 839, 856 |
| GsaI | CCCAGC | 1 cut(s) | 331 |
| HaeIII | GGCC | 2 cut(s) | 1059, 1074 |
| HapII | CCGG | 9 cut(s) | 548, 910, 1115, 1142, 1149, 1182, 1217, 1244, 1265 |
| HgaI | GACGC | 1 cut(s) | 388 |
| HhaI | GCGC | 2 cut(s) | 289, 888 |
| Hin1II | CATG | 2 cut(s) | 512, 520 |
| Hin6I | GCGC | 2 cut(s) | 287, 886 |
| HinP1I | GCGC | 2 cut(s) | 287, 886 |
| HindIII | AAGCTT | 1 cut(s) | 85 |
| HinfI | GANTC | 7 cut(s) | 448, 662, 963, 1111, 1159, 1213, 1254 |
| HpaII | CCGG | 9 cut(s) | 548, 910, 1115, 1142, 1149, 1182, 1217, 1244, 1265 |
| HphI | GGTGA | 9 cut(s) | 553, 619, 1129, 1156, 1159, 1196, 1231, 1258, 1261 |
| Hpy166II | GTNNAC | 1 cut(s) | 363 |
| Hpy188I | TCNGA | 5 cut(s) | 48, 1098, 1110, 1200, 1212 |
| Hpy188III | TCNNGA | 4 cut(s) | 31, 461, 967, 980 |
| Hpy8I | GTNNAC | 1 cut(s) | 363 |
| Hpy99I | CGWCG | 2 cut(s) | 404, 820 |
| HpyAV | CCTTC | 5 cut(s) | 89, 189, 255, 685, 775 |
| HpyCH4III | ACNGT | 4 cut(s) | 299, 565, 682, 754 |
| HpyCH4IV | ACGT | 1 cut(s) | 863 |
| HpyCH4V | TGCA | 4 cut(s) | 384, 508, 877, 1003 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 812, 864, 883 |
| HpyF3I | CTNAG | 3 cut(s) | 83, 452, 687 |
| HpySE526I | ACGT | 1 cut(s) | 863 |
| Hsp92II | CATG | 2 cut(s) | 512, 520 |
| HspAI | GCGC | 2 cut(s) | 287, 886 |
| KpnI | GGTACC | 1 cut(s) | 849 |
| Kzo9I | GATC | 4 cut(s) | 411, 435, 906, 982 |
| LmnI | GCTCC | 3 cut(s) | 224, 525, 575 |
| Lsp1109I | GCAGC | 1 cut(s) | 842 |
| MaeI | CTAG | 6 cut(s) | 39, 120, 579, 932, 1061, 1175 |
| MaeII | ACGT | 1 cut(s) | 863 |
| MalI | GATC | 4 cut(s) | 413, 437, 908, 984 |
| MboI | GATC | 4 cut(s) | 411, 435, 906, 982 |
| MboII | GAAGA | 2 cut(s) | 120, 242 |
| MflI | RGATCY | 1 cut(s) | 906 |
| MhlI | GDGCHC | 1 cut(s) | 1076 |
| MluCI | AATT | 4 cut(s) | 34, 136, 472, 954 |
| MlyI | GAGTC | 5 cut(s) | 457, 671, 957, 1105, 1207 |
| MmeI | TCCRAC | 2 cut(s) | 1088, 1190 |
| MseI | TTAA | 1 cut(s) | 152 |
| MslI | CAYNNNNRTG | 2 cut(s) | 263, 1142 |
| MspI | CCGG | 9 cut(s) | 548, 910, 1115, 1142, 1149, 1182, 1217, 1244, 1265 |
| MspR9I | CCNGG | 4 cut(s) | 911, 960, 1134, 1236 |
| MvaI | CCWGG | 3 cut(s) | 960, 1134, 1236 |
| MvnI | CGCG | 3 cut(s) | 287, 368, 888 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 812, 864, 883 |
| NciI | CCSGG | 1 cut(s) | 911 |
| NdeII | GATC | 4 cut(s) | 411, 435, 906, 982 |
| NlaIII | CATG | 2 cut(s) | 512, 520 |
| NlaIV | GGNNCC | 4 cut(s) | 193, 847, 908, 1074 |
| NmuCI | GTSAC | 9 cut(s) | 676, 748, 1117, 1144, 1165, 1177, 1219, 1246, 1267 |
| OliI | CACNNNNGTG | 1 cut(s) | 1142 |
| PaeR7I | CTCGAG | 1 cut(s) | 445 |
| PfeI | GAWTC | 2 cut(s) | 1159, 1254 |
| PflFI | GACNNNGTC | 2 cut(s) | 1104, 1206 |
| PfoI | TCCNGGA | 1 cut(s) | 958 |
| PinAI | ACCGGT | 3 cut(s) | 1148, 1181, 1264 |
| PkrI | GCNGC | 4 cut(s) | 286, 616, 840, 857 |
| PleI | GAGTC | 5 cut(s) | 456, 670, 957, 1105, 1207 |
| PpsI | GAGTC | 5 cut(s) | 456, 670, 957, 1105, 1207 |
| PpuMI | RGGWCCY | 1 cut(s) | 192 |
| Psp5II | RGGWCCY | 1 cut(s) | 192 |
| Psp6I | CCWGG | 3 cut(s) | 958, 1132, 1234 |
| PspEI | GGTNACC | 4 cut(s) | 1117, 1144, 1219, 1267 |
| PspFI | CCCAGC | 1 cut(s) | 327 |
| PspGI | CCWGG | 3 cut(s) | 958, 1132, 1234 |
| PspN4I | GGNNCC | 4 cut(s) | 193, 847, 908, 1074 |
| PspOMI | GGGCCC | 1 cut(s) | 1072 |
| PspPI | GGNCC | 4 cut(s) | 192, 1057, 1072, 1073 |
| PspPPI | RGGWCCY | 1 cut(s) | 192 |
| PspXI | VCTCGAGB | 1 cut(s) | 445 |
| PsuI | RGATCY | 1 cut(s) | 906 |
| PsyI | GACNNNGTC | 2 cut(s) | 1104, 1206 |
| RsaI | GTAC | 4 cut(s) | 163, 362, 847, 1240 |
| RsaNI | GTAC | 4 cut(s) | 162, 361, 846, 1239 |
| RseI | CAYNNNNRTG | 2 cut(s) | 263, 1142 |
| SaqAI | TTAA | 1 cut(s) | 152 |
| SatI | GCNGC | 4 cut(s) | 285, 615, 839, 856 |
| Sau3AI | GATC | 4 cut(s) | 411, 435, 906, 982 |
| Sau96I | GGNCC | 4 cut(s) | 192, 1057, 1072, 1073 |
| ScaI | AGTACT | 1 cut(s) | 163 |
| SchI | GAGTC | 5 cut(s) | 457, 671, 957, 1105, 1207 |
| ScrFI | CCNGG | 4 cut(s) | 911, 960, 1134, 1236 |
| SduI | GDGCHC | 1 cut(s) | 1076 |
| SfcI | CTRYAG | 1 cut(s) | 429 |
| Sfr274I | CTCGAG | 1 cut(s) | 445 |
| SinI | GGWCC | 1 cut(s) | 192 |
| SlaI | CTCGAG | 1 cut(s) | 445 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 263, 1142 |
| SmlI | CTYRAG | 2 cut(s) | 157, 445 |
| SmoI | CTYRAG | 2 cut(s) | 157, 445 |
| SpeI | ACTAGT | 1 cut(s) | 1174 |
| Sse9I | AATT | 4 cut(s) | 34, 136, 472, 954 |
| SsiI | CCGC | 4 cut(s) | 285, 366, 614, 838 |
| SspMI | CTAG | 6 cut(s) | 39, 120, 579, 932, 1061, 1175 |
| StyD4I | CCNGG | 4 cut(s) | 909, 958, 1132, 1234 |
| StyI | CCWWGG | 2 cut(s) | 1048, 1060 |
| TaaI | ACNGT | 4 cut(s) | 299, 565, 682, 754 |
| TaiI | ACGT | 1 cut(s) | 866 |
| TaqI | TCGA | 4 cut(s) | 414, 438, 446, 985 |
| TasI | AATT | 4 cut(s) | 34, 136, 472, 954 |
| TatI | WGTACW | 2 cut(s) | 161, 360 |
| TauI | GCSGC | 3 cut(s) | 287, 617, 841 |
| TfiI | GAWTC | 2 cut(s) | 1159, 1254 |
| Tru1I | TTAA | 1 cut(s) | 152 |
| Tru9I | TTAA | 1 cut(s) | 152 |
| TscAI | CASTG | 4 cut(s) | 757, 950, 1129, 1231 |
| TseFI | GTSAC | 9 cut(s) | 676, 748, 1117, 1144, 1165, 1177, 1219, 1246, 1267 |
| TseI | GCWGC | 1 cut(s) | 855 |
| Tsp45I | GTSAC | 9 cut(s) | 676, 748, 1117, 1144, 1165, 1177, 1219, 1246, 1267 |
| TspDTI | ATGAA | 3 cut(s) | 38, 719, 1007 |
| TspGWI | ACGGA | 1 cut(s) | 338 |
| TspRI | CASTG | 4 cut(s) | 757, 950, 1129, 1231 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1104, 1206 |
| VpaK11BI | GGWCC | 1 cut(s) | 192 |
| XapI | RAATTY | 2 cut(s) | 34, 954 |
| XhoI | CTCGAG | 1 cut(s) | 445 |
| XmaJI | CCTAGG | 1 cut(s) | 1060 |
| XspI | CTAG | 6 cut(s) | 39, 120, 579, 932, 1061, 1175 |
| ZrmI | AGTACT | 1 cut(s) | 163 |