MD03G1293600.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
37022039 .. 37022407
369 bp
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UTR
Exon/CDS
Intron
MD03G1293600.v1.1.491

Sequence Viewer

Length: 369 bp
ATGCTTCATTGGTGTAGGGTTATGGTGAAGCCGGTGGTGGATGACACGATTTTCGGTGGCGCTAGAGAGGAAAAGTGGGTTGAGAGGGTGGCAATAGCTGCCAGCTTTGGTTGTTTGTGGTGGTGGAGGTTGAGGGACGAGGTTGAGTCTTTTGTTGTTGTGGCTAAAGCTAAAAGAAAGCTGGCAATGGGCTTAGGAGTGGCTGACTTTGTTGGTTGGTGGCTATATTACCTCACTGTGGCTATTGGTATGGTTAGGGTGGTAAAGGGTCTTATGTGGCTTTCCATGGTTTTGTTATGTAGAAGGACAGAAGCCAAACTTTGTAACGATTGCGGAGAAGATCATGGTCGTCAAGACAACAAGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

14.08

Weight (kDa)

8.91

Isoelectric Point (pI)

30.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 362
AciI CCGC 1 cut(s) 333
AfiI CCNNNNNNNGG 1 cut(s) 238
AluBI AGCT 4 cut(s) 98, 105, 170, 181
AluI AGCT 4 cut(s) 98, 105, 170, 181
ApeKI GCWGC 1 cut(s) 98
ArsI GACNNNNNNTTYG 2 cut(s) 35, 67
AspLEI GCGC 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 37
BbvI GCAGC 1 cut(s) 85
BfaI CTAG 1 cut(s) 63
BfoI RGCGCY 1 cut(s) 63
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
Bpu10I CCTNAGC 1 cut(s) 193
BsaJI CCNNGG 1 cut(s) 285
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse118I RCCGGY 1 cut(s) 31
Bse3DI GCAATG 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 1 cut(s) 46
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMI GCAATG 1 cut(s) 192
BseXI GCAGC 1 cut(s) 85
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 238
BsmFI GGGAC 1 cut(s) 149
Bsp143I GATC 1 cut(s) 340
Bsp19I CCATGG 1 cut(s) 285
BspACI CCGC 1 cut(s) 333
BsrDI GCAATG 1 cut(s) 192
BsrFI RCCGGY 1 cut(s) 31
BssAI RCCGGY 1 cut(s) 31
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 1 cut(s) 340
BssT1I CCWWGG 1 cut(s) 285
Bst4CI ACNGT 1 cut(s) 238
BstAPI GCANNNNNTGC 1 cut(s) 98
BstC8I GCNNGC 2 cut(s) 103, 183
BstDEI CTNAG 1 cut(s) 193
BstDSI CCRYGG 1 cut(s) 285
BstF5I GGATG 1 cut(s) 46
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 1 cut(s) 343
BstMBI GATC 1 cut(s) 340
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstV1I GCAGC 1 cut(s) 85
BtgI CCRYGG 1 cut(s) 285
BtsCI GGATG 1 cut(s) 46
BtsIMutI CAGTG 1 cut(s) 234
Cac8I GCNNGC 2 cut(s) 103, 183
CfoI GCGC 1 cut(s) 62
Cfr10I RCCGGY 1 cut(s) 31
CviAII CATG 2 cut(s) 286, 344
DdeI CTNAG 1 cut(s) 193
DpnI GATC 1 cut(s) 342
DpnII GATC 1 cut(s) 340
DrdI GACNNNNNNGTC 1 cut(s) 362
DseDI GACNNNNNNGTC 1 cut(s) 362
Eco130I CCWWGG 1 cut(s) 285
EcoT14I CCWWGG 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 2 cut(s) 289, 347
FaiI YATR 7 cut(s) 23, 226, 251, 275, 287, 298, 345
FalI AAGNNNNNCTT 2 cut(s) 303, 335
FaqI GGGAC 1 cut(s) 149
FatI CATG 2 cut(s) 285, 343
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 99
FspBI CTAG 1 cut(s) 63
GlaI GCGC 1 cut(s) 61
GluI GCNGC 1 cut(s) 99
HaeII RGCGCY 1 cut(s) 63
HapII CCGG 1 cut(s) 32
HhaI GCGC 1 cut(s) 62
Hin1II CATG 2 cut(s) 289, 347
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HinfI GANTC 1 cut(s) 146
HpaII CCGG 1 cut(s) 32
HphI GGTGA 1 cut(s) 37
Hpy188III TCNNGA 1 cut(s) 353
HpyAV CCTTC 1 cut(s) 297
HpyCH4III ACNGT 1 cut(s) 238
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 1 cut(s) 193
Hsp92II CATG 2 cut(s) 289, 347
HspAI GCGC 1 cut(s) 60
Kzo9I GATC 1 cut(s) 340
LpnPI CCDG 3 cut(s) 45, 115, 167
Lsp1109I GCAGC 1 cut(s) 85
MaeI CTAG 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 323
MalI GATC 1 cut(s) 342
MboI GATC 1 cut(s) 340
MboII GAAGA 1 cut(s) 350
MlyI GAGTC 1 cut(s) 155
MnlI CCTC 6 cut(s) 61, 78, 120, 126, 133, 242
MspI CCGG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 98
NcoI CCATGG 1 cut(s) 285
NdeII GATC 1 cut(s) 340
NlaIII CATG 2 cut(s) 289, 347
PkrI GCNGC 1 cut(s) 100
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 1 cut(s) 340
SchI GAGTC 1 cut(s) 155
SetI ASST 8 cut(s) 100, 107, 131, 144, 172, 183, 234, 366
SgeI CNNG 9 cut(s) 44, 58, 75, 114, 151, 194, 298, 356, 365
SsiI CCGC 1 cut(s) 333
SspMI CTAG 1 cut(s) 63
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 1 cut(s) 238
TscAI CASTG 1 cut(s) 241
TseI GCWGC 1 cut(s) 98
TspRI CASTG 1 cut(s) 241
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.