AT1G02575

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011963
Physical Location & Seq
Forward (+)
543011 .. 544057
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G02575.1

Sequence Viewer

Length: 831 bp
ATGGAACATGAAGAAACACAAAAGAACACAAGAAACAGCTGGTCCCTGATTCGACCATTTCAAATGATCTCCATTAGCTTTCTTAGCCTCCTCCTCCCTCTATCTTTCCTCTTTCTTTCACGTCTCTCTCTCTATACCTCCTCAACTCCGGTCACCGTCTCCGGCGTTTCCTCTGTTATTCACCAGGCAGATGTCGGAGTCTTATACACGATCTTGTTTCTCATCATCGTCTTCACTTTAATCCACAGTCTCTCAGGAAAACCAGAATGCTCTGTTCTCCATTCCCATCTCTACATCTGCTGGATCGTTCTCTTCATCGCCCAAGCTTGTGCCTTTGGGATCAAAAGAACCATGAGCACGACCATGTCTATAAATCCAGACAAAAACTTGTTTCTTGCGACACATGAAAGATGGATGTTGGTTAGGGTTTTGTTCTTTTTGGGGCTACACGAAGTGATGCTGATGTGGTTTAGAGTCGTGGTTAAGCCTGTGGTTGACAACACTATATATGGGGTCTACGTGGAGGAGAGGTGGTCCGAGAGAGCCGTTGTGGCAGTGACCTTTGGTATAATGTGGTGGTGGAGGCTAAGAGATGAGGTAGAAAGTCTTGTGGTGGTGGTTACGGCGGATAGACTTAACCTCCCCATTCGTTTGGAGGGTCTCAATTTTGTGAACTGGTGTATGTATTACATCTGTGTTGGAATTGGTTTAATGAAGATCTTCAAAGGGTTTTTGGATTTTGTGAATACGTTGACTTTGAGCATTAAGAGGTCGAGAAAAGGCTGTGAATCATGTGTTTTTGATGATATGTGTAATGATGATCATGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

276

Amino Acids

31.87

Weight (kDa)

7.62

Isoelectric Point (pI)

32.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 516
AciI CCGC 1 cut(s) 626
AclWI GGATC 2 cut(s) 311, 347
AdeI CACNNNGTG 1 cut(s) 454
AgsI TTSAA 2 cut(s) 62, 724
AjiI CACGTC 1 cut(s) 122
AjnI CCWGG 1 cut(s) 183
AluBI AGCT 3 cut(s) 39, 78, 326
AluI AGCT 3 cut(s) 39, 78, 326
Alw21I GWGCWC 1 cut(s) 359
Alw26I GTCTC 4 cut(s) 128, 163, 254, 665
AlwI GGATC 2 cut(s) 311, 347
Asp700I GAANNNNTTC 1 cut(s) 719
AspS9I GGNCC 2 cut(s) 42, 534
AsuHPI GGTGA 2 cut(s) 145, 173
AvaII GGWCC 2 cut(s) 42, 534
BbsI GAAGAC 1 cut(s) 223
Bbv12I GWGCWC 1 cut(s) 359
BccI CCATC 2 cut(s) 294, 405
BceAI ACGGC 2 cut(s) 530, 639
BciT130I CCWGG 1 cut(s) 185
BclI TGATCA 1 cut(s) 820
BcoDI GTCTC 4 cut(s) 128, 163, 254, 665
BglI GCCNNNNNGGC 1 cut(s) 551
BglII AGATCT 1 cut(s) 717
Bme1390I CCNGG 1 cut(s) 185
Bme18I GGWCC 2 cut(s) 42, 534
BmgBI CACGTC 1 cut(s) 122
BmgT120I GGNCC 2 cut(s) 42, 534
BmiI GGNNCC 1 cut(s) 44
BmrFI CCNGG 1 cut(s) 185
BmsI GCATC 1 cut(s) 447
BpiI GAAGAC 1 cut(s) 223
BsaAI YACGTR 1 cut(s) 520
BsaI GGTCTC 1 cut(s) 665
BsaWI WCCGGW 1 cut(s) 148
BsaXI ACNNNNNCTCC 6 cut(s) 515, 518, 545, 548, 624, 654
Bse1I ACTGG 1 cut(s) 680
BseBI CCWGG 1 cut(s) 185
BseGI GGATG 1 cut(s) 420
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 1 cut(s) 680
BseRI GAGGAG 4 cut(s) 80, 83, 130, 539
BsiHKAI GWGCWC 1 cut(s) 359
BsiSI CCGG 2 cut(s) 149, 162
BslFI GGGAC 1 cut(s) 28
BsmAI GTCTC 4 cut(s) 128, 163, 254, 665
BsmBI CGTCTC 2 cut(s) 128, 163
BsmFI GGGAC 1 cut(s) 28
BsmI GAATGC 1 cut(s) 272
Bso31I GGTCTC 1 cut(s) 665
Bsp1286I GDGCHC 1 cut(s) 359
Bsp143I GATC 6 cut(s) 66, 210, 303, 339, 717, 820
BspACI CCGC 1 cut(s) 626
BspCNI CTCAG 1 cut(s) 266
BspLI GGNNCC 1 cut(s) 44
BspPI GGATC 2 cut(s) 311, 347
BspTNI GGTCTC 1 cut(s) 665
BsrI ACTGG 1 cut(s) 680
BssMI GATC 6 cut(s) 66, 210, 303, 339, 717, 820
Bst2UI CCWGG 1 cut(s) 185
Bst4CI ACNGT 2 cut(s) 157, 248
Bst6I CTCTTC 1 cut(s) 317
BstBAI YACGTR 1 cut(s) 520
BstDEI CTNAG 3 cut(s) 83, 253, 587
BstEII GGTNACC 1 cut(s) 151
BstF5I GGATG 1 cut(s) 420
BstKTI GATC 6 cut(s) 69, 213, 306, 342, 720, 823
BstMAI GTCTC 4 cut(s) 128, 163, 254, 665
BstMBI GATC 6 cut(s) 66, 210, 303, 339, 717, 820
BstMWI GCNNNNNNNGC 2 cut(s) 84, 551
BstNI CCWGG 1 cut(s) 185
BstPI GGTNACC 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 183
BstV2I GAAGAC 1 cut(s) 223
BstX2I RGATCY 1 cut(s) 717
BstXI CCANNNNNNTGG 1 cut(s) 652
BstYI RGATCY 1 cut(s) 717
BtgZI GCGATG 1 cut(s) 301
BtrI CACGTC 1 cut(s) 122
BtsCI GGATG 1 cut(s) 420
BtsI GCAGTG 1 cut(s) 561
BtsIMutI CAGTG 1 cut(s) 561
Cfr13I GGNCC 2 cut(s) 42, 534
CviAII CATG 6 cut(s) 8, 352, 364, 404, 792, 824
CviJI RGCY 9 cut(s) 39, 78, 87, 326, 445, 487, 545, 586, 783
CviKI_1 RGCY 9 cut(s) 39, 78, 87, 326, 445, 487, 545, 586, 783
DdeI CTNAG 3 cut(s) 83, 253, 587
DpnI GATC 6 cut(s) 68, 212, 305, 341, 719, 822
DpnII GATC 6 cut(s) 66, 210, 303, 339, 717, 820
DraIII CACNNNGTG 1 cut(s) 454
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
EciI GGCGGA 1 cut(s) 641
Eco31I GGTCTC 1 cut(s) 665
Eco47I GGWCC 2 cut(s) 42, 534
Eco91I GGTNACC 1 cut(s) 151
EcoO65I GGTNACC 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 183
Esp3I CGTCTC 2 cut(s) 128, 163
FaeI CATG 6 cut(s) 11, 355, 367, 407, 795, 827
FaqI GGGAC 1 cut(s) 28
FatI CATG 6 cut(s) 7, 351, 363, 403, 791, 823
FbaI TGATCA 1 cut(s) 820
FblI GTMKAC 1 cut(s) 516
FokI GGATG 1 cut(s) 427
HapII CCGG 2 cut(s) 149, 162
Hin1II CATG 6 cut(s) 11, 355, 367, 407, 795, 827
HincII GTYRAC 2 cut(s) 496, 753
HindII GTYRAC 2 cut(s) 496, 753
HindIII AAGCTT 1 cut(s) 324
HinfI GANTC 4 cut(s) 49, 198, 474, 788
HpaII CCGG 2 cut(s) 149, 162
HphI GGTGA 2 cut(s) 145, 173
Hpy166II GTNNAC 4 cut(s) 496, 517, 673, 753
Hpy188I TCNGA 2 cut(s) 197, 538
Hpy188III TCNNGA 3 cut(s) 255, 377, 774
Hpy8I GTNNAC 4 cut(s) 496, 517, 673, 753
HpyCH4III ACNGT 2 cut(s) 157, 248
HpyCH4IV ACGT 3 cut(s) 121, 519, 749
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 551
HpyF3I CTNAG 3 cut(s) 83, 253, 587
HpySE526I ACGT 3 cut(s) 121, 519, 749
Hsp92II CATG 6 cut(s) 11, 355, 367, 407, 795, 827
Ksp22I TGATCA 1 cut(s) 820
Kzo9I GATC 6 cut(s) 66, 210, 303, 339, 717, 820
LweI GCATC 1 cut(s) 447
MaeII ACGT 3 cut(s) 121, 519, 749
MaeIII GTNAC 3 cut(s) 151, 556, 619
MalI GATC 6 cut(s) 68, 212, 305, 341, 719, 822
MboI GATC 6 cut(s) 66, 210, 303, 339, 717, 820
MboII GAAGA 5 cut(s) 23, 223, 304, 712, 727
MflI RGATCY 1 cut(s) 717
MhlI GDGCHC 1 cut(s) 359
MluCI AATT 2 cut(s) 664, 702
MlyI GAGTC 2 cut(s) 207, 483
MmeI TCCRAC 2 cut(s) 175, 679
MroXI GAANNNNTTC 1 cut(s) 719
MseI TTAA 5 cut(s) 239, 483, 636, 710, 765
MslI CAYNNNNRTG 1 cut(s) 362
MspA1I CMGCKG 1 cut(s) 39
MspI CCGG 2 cut(s) 149, 162
MspR9I CCNGG 1 cut(s) 185
Mva1269I GAATGC 1 cut(s) 272
MvaI CCWGG 1 cut(s) 185
MwoI GCNNNNNNNGC 2 cut(s) 84, 551
NdeII GATC 6 cut(s) 66, 210, 303, 339, 717, 820
NlaIII CATG 6 cut(s) 11, 355, 367, 407, 795, 827
NlaIV GGNNCC 1 cut(s) 44
NmuCI GTSAC 2 cut(s) 151, 556
PctI GAATGC 1 cut(s) 272
PdmI GAANNNNTTC 1 cut(s) 719
PfeI GAWTC 2 cut(s) 49, 788
PflFI GACNNNGTC 1 cut(s) 364
PleI GAGTC 2 cut(s) 206, 482
PpsI GAGTC 2 cut(s) 206, 482
Ppu21I YACGTR 1 cut(s) 520
Psp6I CCWGG 1 cut(s) 183
PspEI GGTNACC 1 cut(s) 151
PspGI CCWGG 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 44
PspPI GGNCC 2 cut(s) 42, 534
PsuI RGATCY 1 cut(s) 717
PsyI GACNNNGTC 1 cut(s) 364
PvuII CAGCTG 1 cut(s) 39
RseI CAYNNNNRTG 1 cut(s) 362
SaqAI TTAA 5 cut(s) 239, 483, 636, 710, 765
Sau3AI GATC 6 cut(s) 66, 210, 303, 339, 717, 820
Sau96I GGNCC 2 cut(s) 42, 534
SchI GAGTC 2 cut(s) 207, 483
ScrFI CCNGG 1 cut(s) 185
SduI GDGCHC 1 cut(s) 359
SfaNI GCATC 1 cut(s) 447
SinI GGWCC 2 cut(s) 42, 534
SmiMI CAYNNNNRTG 1 cut(s) 362
Sse9I AATT 2 cut(s) 664, 702
SsiI CCGC 1 cut(s) 626
StyD4I CCNGG 1 cut(s) 183
TaaI ACNGT 2 cut(s) 157, 248
TaiI ACGT 3 cut(s) 124, 522, 752
TaqI TCGA 2 cut(s) 52, 773
TasI AATT 2 cut(s) 664, 702
TfiI GAWTC 2 cut(s) 49, 788
Tru1I TTAA 5 cut(s) 239, 483, 636, 710, 765
Tru9I TTAA 5 cut(s) 239, 483, 636, 710, 765
TscAI CASTG 1 cut(s) 561
TseFI GTSAC 2 cut(s) 151, 556
Tsp45I GTSAC 2 cut(s) 151, 556
TspDTI ATGAA 4 cut(s) 24, 304, 420, 728
TspRI CASTG 1 cut(s) 561
Tth111I GACNNNGTC 1 cut(s) 364
VpaK11BI GGWCC 2 cut(s) 42, 534
XmiI GTMKAC 1 cut(s) 516
XmnI GAANNNNTTC 1 cut(s) 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.