Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006520

Physical Location & Seq

Genomic Coordinates Reverse (-)

599330 .. 602199

Gene Structure 2870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G02740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGGAAGCCCTAACGCCGCCGCCGAGACGGATCTAACAACCGATGATTTCATCGGAGACACACGACGGGACTCTGGTTCTGATACAGAGACCAACACCGATTGTGACGGAGAAGATTTGCCTCTTCTTCTGCTACCTGCTCCTCCCGGCCACTTCGAAGAAGGAGAGAGAGTTTTAGCCAAACACAGTGATTGCTTCTACGAAGCCAAGGTTCTTAAAGTTGAATTTAAAGACAATGAATGGAAATATTTTGTGCATTACATTGGTTGGAACAAAAGTTGGGACGAATGGATAAGGCTGGACTGTCTGTTGAAACATTCAGATGAGAATATTGAGAAACAGAAAGAACAGGGTTTGAAACAGCAAGGGATTAAGAGTGCTATGGCTTGGAAAGTGTCAAAGATGAAACCTAGAAGCCCTAATGTTGCTAGAGGAAGAAAGCGGAAGCAAGATTCTGTTGATACGGAGAAGAATGTGCTTCCCTCTGACAACCTTTTAAGTTTCAATATTCCACCAGCATTAAGGAAGCAACTTCTTGACGATTTTGAATTTGTTACTCAGATGCAGAAGCTTGTGCAACTTCCGCGTTCTCCAAATGTGGATGGCATCTTGAAGAAGTACATTGACAGCCAAATGAAGAAACATGGCAGGGTAACAGATTCATTAGAGGAAATTCTGAAAGGCTTGCGTTGCTACTTTGACAAAGCTTTACCGGTGATGTTGCTTTACAACAATGAACGGAAGCAGTACGAGGAATCCGTATCAGGGGGTGTTTCTCCTTCAACTGTGTACGGAGCAGAGCATTTGTTGCGACTCTTTGTGAAATTACCGGAGTTGCTAGTACATGTGAATATGGCAGAAGAGACATTGAAGGAATTGCAGGACAACTTTGTTGATATTCTCAGGTTCTTGAGGAAGAATCAGAGTGTGCTTTTTGTATCGACATACAAAGCAGTGGAAGAAATGGAGAAGAAAGAAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016573 GO:0016575 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0031248 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035267 GO:0035601 GO:0036211 GO:0040029 GO:0040034 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1902679 GO:1903506 GO:1903507 GO:1990188 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRG Tudor-knot

Protein Analysis

327

Amino Acids

37.63

Weight (kDa)

5.78

Isoelectric Point (pI)

49.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MSL3_chromo-like	PF22732	52 - 116	1.3e-13	MSL3 chromodomain-like
Tudor-knot	PF11717	52 - 102	4.3e-13	RNA binding activity-knot of a chromodomain
MRG	PF05712	147 - 317	8.9e-45	MRG

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02740
fragaria_vesca	FvH4_2g33880 FvH4_2g33880 FvH4_2g33880 FvH4_2g33880 FvH4_2g33880
malus_domestica	MD08G1091800.v1.1 MD12G1169000.v1.1 MD15G1076200.v1.1
prunus_persica	Prupe.1G429500_v2.0.a1
pyrus_communis	pycom08g07450
rosa_chinensis	RchiOBHm_Chr6g0308521 RchiOBHm_Chr6g0308621
rosa_laevigata	RLG00000010635
rosa_multiflora	Rmu_sc0001161.1_g000019
rosa_roxburghii	Rroxscaffold_7G00160050
rosa_rugosa	Rorug06G0367500 Rorug06G0367600
rosa_samantha	Rh6AG477400 Rh6AG477700 Rh6AG478100 Rh6BG487700 Rh6CG492700 Rh6DG478900
rosa_wichuraiana	Rw6G041660 Rw6G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	145
AccII	CGCG	1 cut(s)	586
AciI	CCGC	4 cut(s)	18, 21, 442, 584
AclWI	GGATC	1 cut(s)	39
AcoI	YGGCCR	1 cut(s)	148
AcsI	RAATTY	3 cut(s)	224, 548, 672
AfaI	GTAC	4 cut(s)	620, 749, 791, 843
AfiI	CCNNNNNNNGG	1 cut(s)	765
AflIII	ACRYGT	1 cut(s)	844
AgeI	ACCGGT	1 cut(s)	712
AgsI	TTSAA	8 cut(s)	224, 313, 358, 505, 548, 613, 783, 871
AluBI	AGCT	2 cut(s)	571, 707
AluI	AGCT	2 cut(s)	571, 707
Alw26I	GTCTC	4 cut(s)	20, 51, 83, 857
AlwI	GGATC	1 cut(s)	39
AoxI	GGCC	1 cut(s)	148
ApoI	RAATTY	3 cut(s)	224, 548, 672
AsiGI	ACCGGT	1 cut(s)	712
AsuC2I	CCSGG	1 cut(s)	147
AsuHPI	GGTGA	1 cut(s)	727
AsuII	TTCGAA	1 cut(s)	156
BccI	CCATC	1 cut(s)	596
BcnI	CCSGG	1 cut(s)	147
BcoDI	GTCTC	4 cut(s)	20, 51, 83, 857
BfaI	CTAG	3 cut(s)	411, 429, 839
BfuAI	ACCTGC	1 cut(s)	145
BisI	GCNGC	2 cut(s)	18, 21
BlsI	GCNGC	2 cut(s)	19, 22
Bme1390I	CCNGG	1 cut(s)	147
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	2 cut(s)	552, 615
Bpu14I	TTCGAA	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	931
BpuMI	CCSGG	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	207
BsaWI	WCCGGW	2 cut(s)	712, 829
BsaXI	ACNNNNNCTCC	2 cut(s)	156, 186
Bsc4I	CCNNNNNNNGG	1 cut(s)	765
Bse118I	RCCGGY	1 cut(s)	712
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	1 cut(s)	607
BseLI	CCNNNNNNNGG	1 cut(s)	765
BseMII	CTCAG	2 cut(s)	572, 916
BseRI	GAGGAG	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	586
BshFI	GGCC	1 cut(s)	150
BshTI	ACCGGT	1 cut(s)	712
BsiSI	CCGG	3 cut(s)	147, 713, 830
BslFI	GGGAC	2 cut(s)	83, 296
BslI	CCNNNNNNNGG	1 cut(s)	765
BsmAI	GTCTC	4 cut(s)	20, 51, 83, 857
BsmBI	CGTCTC	1 cut(s)	20
BsmFI	GGGAC	2 cut(s)	83, 296
BsnI	GGCC	1 cut(s)	150
Bso31I	GGTCTC	1 cut(s)	83
Bsp119I	TTCGAA	1 cut(s)	156
Bsp143I	GATC	1 cut(s)	31
BspACI	CCGC	4 cut(s)	18, 21, 442, 584
BspANI	GGCC	1 cut(s)	150
BspCNI	CTCAG	2 cut(s)	571, 915
BspFNI	CGCG	1 cut(s)	586
BspMI	ACCTGC	1 cut(s)	145
BspPI	GGATC	1 cut(s)	39
BspT104I	TTCGAA	1 cut(s)	156
BspTNI	GGTCTC	1 cut(s)	83
BsrFI	RCCGGY	1 cut(s)	712
BssAI	RCCGGY	1 cut(s)	712
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	1 cut(s)	31
BssT1I	CCWWGG	1 cut(s)	207
Bst4CI	ACNGT	3 cut(s)	188, 305, 787
Bst6I	CTCTTC	2 cut(s)	129, 855
BstAPI	GCANNNNNTGC	1 cut(s)	808
BstBI	TTCGAA	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	686
BstDEI	CTNAG	2 cut(s)	558, 902
BstF5I	GGATG	1 cut(s)	607
BstFNI	CGCG	1 cut(s)	586
BstKTI	GATC	1 cut(s)	34
BstMAI	GTCTC	4 cut(s)	20, 51, 83, 857
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	3 cut(s)	583, 690, 808
BstNSI	RCATGY	1 cut(s)	848
BstSCI	CCNGG	1 cut(s)	145
BstUI	CGCG	1 cut(s)	586
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	607
BtsI	GCAGTG	1 cut(s)	960
BtsIMutI	CAGTG	2 cut(s)	193, 960
BveI	ACCTGC	1 cut(s)	145
Cac8I	GCNNGC	1 cut(s)	686
Cfr10I	RCCGGY	1 cut(s)	712
Csp6I	GTAC	4 cut(s)	619, 748, 790, 842
CspAI	ACCGGT	1 cut(s)	712
CviAII	CATG	2 cut(s)	644, 845
CviQI	GTAC	4 cut(s)	619, 748, 790, 842
DdeI	CTNAG	2 cut(s)	558, 902
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
DraI	TTTAAA	1 cut(s)	229
EaeI	YGGCCR	1 cut(s)	148
Eam1104I	CTCTTC	2 cut(s)	129, 855
EarI	CTCTTC	2 cut(s)	129, 855
Eco130I	CCWWGG	1 cut(s)	207
Eco31I	GGTCTC	1 cut(s)	83
EcoT14I	CCWWGG	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	207
Esp3I	CGTCTC	1 cut(s)	20
FaeI	CATG	2 cut(s)	647, 848
FaiI	YATR	5 cut(s)	383, 645, 846, 854, 946
FaqI	GGGAC	2 cut(s)	83, 296
FatI	CATG	2 cut(s)	643, 844
Fnu4HI	GCNGC	2 cut(s)	18, 21
FokI	GGATG	1 cut(s)	614
Fsp4HI	GCNGC	2 cut(s)	18, 21
FspBI	CTAG	3 cut(s)	411, 429, 839
GluI	GCNGC	2 cut(s)	18, 21
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	3 cut(s)	147, 713, 830
Hin1II	CATG	2 cut(s)	647, 848
HindIII	AAGCTT	2 cut(s)	569, 705
HinfI	GANTC	6 cut(s)	71, 452, 659, 755, 813, 919
HpaII	CCGG	3 cut(s)	147, 713, 830
HphI	GGTGA	1 cut(s)	727
Hpy166II	GTNNAC	1 cut(s)	790
Hpy188I	TCNGA	7 cut(s)	56, 82, 322, 487, 561, 678, 924
Hpy188III	TCNNGA	3 cut(s)	536, 610, 910
Hpy8I	GTNNAC	1 cut(s)	790
Hpy99I	CGWCG	1 cut(s)	69
HpyAV	CCTTC	4 cut(s)	155, 789, 865, 971
HpyCH4III	ACNGT	3 cut(s)	188, 305, 787
HpyCH4V	TGCA	4 cut(s)	256, 565, 577, 880
HpyF10VI	GCNNNNNNNGC	3 cut(s)	583, 690, 808
HpyF3I	CTNAG	2 cut(s)	558, 902
Hsp92II	CATG	2 cut(s)	647, 848
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	2 cut(s)	145, 794
LweI	GCATC	2 cut(s)	552, 615
MaeI	CTAG	3 cut(s)	411, 429, 839
MaeIII	GTNAC	3 cut(s)	104, 553, 652
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MflI	RGATCY	1 cut(s)	31
MluCI	AATT	5 cut(s)	224, 548, 672, 824, 875
MlyI	GAGTC	2 cut(s)	65, 807
MmeI	TCCRAC	1 cut(s)	248
MnlI	CCTC	7 cut(s)	132, 153, 425, 493, 661, 745, 906
MseI	TTAA	5 cut(s)	216, 228, 372, 497, 521
MslI	CAYNNNNRTG	1 cut(s)	321
MspI	CCGG	3 cut(s)	147, 713, 830
MspR9I	CCNGG	1 cut(s)	147
MvnI	CGCG	1 cut(s)	586
MwoI	GCNNNNNNNGC	3 cut(s)	583, 690, 808
NciI	CCSGG	1 cut(s)	147
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	2 cut(s)	647, 848
NmeAIII	GCCGAG	1 cut(s)	49
NmuCI	GTSAC	1 cut(s)	104
NspI	RCATGY	1 cut(s)	848
NspV	TTCGAA	1 cut(s)	156
PciI	ACATGT	1 cut(s)	844
PcsI	WCGNNNNNNNCGW	2 cut(s)	21, 756
PfeI	GAWTC	4 cut(s)	452, 659, 755, 919
PinAI	ACCGGT	1 cut(s)	712
PkrI	GCNGC	2 cut(s)	19, 22
PleI	GAGTC	2 cut(s)	65, 807
PpsI	GAGTC	2 cut(s)	65, 807
PscI	ACATGT	1 cut(s)	844
PsuI	RGATCY	1 cut(s)	31
RsaI	GTAC	4 cut(s)	620, 749, 791, 843
RsaNI	GTAC	4 cut(s)	619, 748, 790, 842
RseI	CAYNNNNRTG	1 cut(s)	321
SaqAI	TTAA	5 cut(s)	216, 228, 372, 497, 521
SatI	GCNGC	2 cut(s)	18, 21
Sau3AI	GATC	1 cut(s)	31
SchI	GAGTC	2 cut(s)	65, 807
ScrFI	CCNGG	1 cut(s)	147
SetI	ASST	8 cut(s)	139, 213, 412, 495, 573, 709, 908, 982
SfaNI	GCATC	2 cut(s)	552, 615
SfuI	TTCGAA	1 cut(s)	156
SmiMI	CAYNNNNRTG	1 cut(s)	321
SmlI	CTYRAG	1 cut(s)	910
SmoI	CTYRAG	1 cut(s)	910
Sse9I	AATT	5 cut(s)	224, 548, 672, 824, 875
SsiI	CCGC	4 cut(s)	18, 21, 442, 584
SspI	AATATT	3 cut(s)	248, 331, 508
SspMI	CTAG	3 cut(s)	411, 429, 839
StyD4I	CCNGG	1 cut(s)	145
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	3 cut(s)	188, 305, 787
TaqI	TCGA	2 cut(s)	156, 941
TasI	AATT	5 cut(s)	224, 548, 672, 824, 875
TatI	WGTACW	2 cut(s)	618, 841
TauI	GCSGC	2 cut(s)	20, 23
TfiI	GAWTC	4 cut(s)	452, 659, 755, 919
Tru1I	TTAA	5 cut(s)	216, 228, 372, 497, 521
Tru9I	TTAA	5 cut(s)	216, 228, 372, 497, 521
TscAI	CASTG	2 cut(s)	193, 960
TseFI	GTSAC	1 cut(s)	104
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	6 cut(s)	40, 252, 419, 650, 651, 750
TspGWI	ACGGA	6 cut(s)	44, 123, 479, 748, 754, 807
TspRI	CASTG	2 cut(s)	193, 960
XapI	RAATTY	3 cut(s)	224, 548, 672
XceI	RCATGY	1 cut(s)	848
XspI	CTAG	3 cut(s)	411, 429, 839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.