Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006520

Physical Location & Seq

Genomic Coordinates Forward (+)

66664924 .. 66667813

Gene Structure 2890 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27751

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCGTTTTCGAAGAAGGATGATCTTTCTGGTTATGCTGAAAGCTCATTCAGTTGAAGAAATTCTGAAAGGACTATGTTGCTACTTTGACAAAGCATTGCCAGTTATCCTAATTCTTTACAAAAATGAGCGTCCGCAGTATGAGAAAGCAATTGCAGATAATGTCTCTCCTTCATCTGTATACGGTGCTGAGCATCTATTACGCCTCTTTGTTAAACTGCCCGAGCTATTGGTTGAGGCTAACATTGAAGAGGAGACTTTGAAAGAGCTGCTGCAAAGATTGGCCGACTTTCTCAAGTTCCTACATAAGAACCAGAGTGCATTCTTCCTCGCTTCCTACCATGTACCAGAAGATACTGAAATCAGCACCAACAAACAAGATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016573 GO:0016575 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0031248 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035267 GO:0035601 GO:0036211 GO:0040029 GO:0040034 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1902679 GO:1903506 GO:1903507 GO:1990188 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRG Tudor-knot

Protein Analysis

128

Amino Acids

14.99

Weight (kDa)

6.09

Isoelectric Point (pI)

63.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRG	PF05712	17 - 113	1.3e-28	MRG

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02740
fragaria_vesca	FvH4_2g33880 FvH4_2g33880 FvH4_2g33880 FvH4_2g33880 FvH4_2g33880
malus_domestica	MD08G1091800.v1.1 MD12G1169000.v1.1 MD15G1076200.v1.1
prunus_persica	Prupe.1G429500_v2.0.a1
pyrus_communis	pycom08g07450
rosa_chinensis	RchiOBHm_Chr6g0308521 RchiOBHm_Chr6g0308621
rosa_laevigata	RLG00000010635
rosa_multiflora	Rmu_sc0001161.1_g000019
rosa_roxburghii	Rroxscaffold_7G00160050
rosa_rugosa	Rorug06G0367500 Rorug06G0367600
rosa_samantha	Rh6AG477400 Rh6AG477700 Rh6AG478100 Rh6BG487700 Rh6CG492700 Rh6DG478900
rosa_wichuraiana	Rw6G041660 Rw6G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	180
AciI	CCGC	1 cut(s)	134
AcoI	YGGCCR	1 cut(s)	282
AcsI	RAATTY	1 cut(s)	60
AfaI	GTAC	1 cut(s)	345
AgsI	TTSAA	3 cut(s)	56, 248, 262
AluBI	AGCT	3 cut(s)	44, 226, 268
AluI	AGCT	3 cut(s)	44, 226, 268
Alw26I	GTCTC	2 cut(s)	169, 248
Ama87I	CYCGRG	1 cut(s)	221
AoxI	GGCC	1 cut(s)	282
ApeKI	GCWGC	2 cut(s)	268, 271
ApoI	RAATTY	1 cut(s)	60
Asp700I	GAANNNNTTC	1 cut(s)	60
AsuII	TTCGAA	1 cut(s)	10
AvaI	CYCGRG	1 cut(s)	221
BbvI	GCAGC	2 cut(s)	255, 258
BcoDI	GTCTC	2 cut(s)	169, 248
BisI	GCNGC	2 cut(s)	269, 272
BlpI	GCTNAGC	1 cut(s)	189
BlsI	GCNGC	2 cut(s)	270, 273
BmeT110I	CYCGRG	1 cut(s)	221
BmsI	GCATC	1 cut(s)	202
Bpu1102I	GCTNAGC	1 cut(s)	189
Bpu14I	TTCGAA	1 cut(s)	10
BpuEI	CTTGAG	1 cut(s)	278
Bse1I	ACTGG	1 cut(s)	101
Bse3DI	GCAATG	1 cut(s)	95
BseGI	GGATG	1 cut(s)	24
BseMI	GCAATG	1 cut(s)	95
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	101
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	2 cut(s)	255, 258
BshFI	GGCC	1 cut(s)	284
BsiHKCI	CYCGRG	1 cut(s)	221
BsmAI	GTCTC	2 cut(s)	169, 248
BsmI	GAATGC	1 cut(s)	320
BsnI	GGCC	1 cut(s)	284
BsoBI	CYCGRG	1 cut(s)	221
Bsp119I	TTCGAA	1 cut(s)	10
Bsp143I	GATC	1 cut(s)	21
Bsp1720I	GCTNAGC	1 cut(s)	189
BspACI	CCGC	1 cut(s)	134
BspANI	GGCC	1 cut(s)	284
BspCNI	CTCAG	1 cut(s)	181
BspT104I	TTCGAA	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	101
BssMI	GATC	1 cut(s)	21
BssNAI	GTATAC	1 cut(s)	181
Bst1107I	GTATAC	1 cut(s)	181
Bst4CI	ACNGT	1 cut(s)	185
Bst6I	CTCTTC	1 cut(s)	243
BstBI	TTCGAA	1 cut(s)	10
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	24
BstKTI	GATC	1 cut(s)	24
BstMAI	GTCTC	2 cut(s)	169, 248
BstMBI	GATC	1 cut(s)	21
BstV1I	GCAGC	2 cut(s)	255, 258
BstZ17I	GTATAC	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	284
BtsCI	GGATG	1 cut(s)	24
CseI	GACGC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	344
CviAII	CATG	1 cut(s)	341
CviJI	RGCY	5 cut(s)	44, 226, 239, 268, 284
CviKI_1	RGCY	5 cut(s)	44, 226, 239, 268, 284
CviQI	GTAC	1 cut(s)	344
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
EaeI	YGGCCR	1 cut(s)	282
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Eco88I	CYCGRG	1 cut(s)	221
FaeI	CATG	1 cut(s)	344
FaiI	YATR	6 cut(s)	35, 76, 141, 181, 306, 342
FatI	CATG	1 cut(s)	340
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	2 cut(s)	269, 272
FokI	GGATG	1 cut(s)	31
Fsp4HI	GCNGC	2 cut(s)	269, 272
GluI	GCNGC	2 cut(s)	269, 272
HaeIII	GGCC	1 cut(s)	284
HgaI	GACGC	1 cut(s)	119
Hin1II	CATG	1 cut(s)	344
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	1 cut(s)	66
Hpy8I	GTNNAC	1 cut(s)	181
HpyAV	CCTTC	2 cut(s)	9, 180
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4V	TGCA	3 cut(s)	155, 274, 320
HpyF3I	CTNAG	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	344
Kzo9I	GATC	1 cut(s)	21
LpnPI	CCDG	4 cut(s)	14, 114, 326, 360
Lsp1109I	GCAGC	2 cut(s)	255, 258
LweI	GCATC	1 cut(s)	202
MalI	GATC	1 cut(s)	23
MboI	GATC	1 cut(s)	21
MboII	GAAGA	5 cut(s)	24, 68, 260, 316, 362
MfeI	CAATTG	1 cut(s)	150
MluCI	AATT	3 cut(s)	60, 111, 150
MnlI	CCTC	4 cut(s)	215, 229, 244, 338
MroXI	GAANNNNTTC	1 cut(s)	60
MseI	TTAA	1 cut(s)	213
MunI	CAATTG	1 cut(s)	150
Mva1269I	GAATGC	1 cut(s)	320
NdeII	GATC	1 cut(s)	21
NlaIII	CATG	1 cut(s)	344
NspV	TTCGAA	1 cut(s)	10
PctI	GAATGC	1 cut(s)	320
PdmI	GAANNNNTTC	1 cut(s)	60
PkrI	GCNGC	2 cut(s)	270, 273
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	2 cut(s)	269, 272
Sau3AI	GATC	1 cut(s)	21
SetI	ASST	3 cut(s)	46, 228, 270
SfaNI	GCATC	1 cut(s)	202
SfuI	TTCGAA	1 cut(s)	10
SgeI	CNNG	9 cut(s)	41, 113, 233, 235, 307, 325, 341, 353, 359
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	3 cut(s)	60, 111, 150
SsiI	CCGC	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	185
TaqI	TCGA	1 cut(s)	10
TasI	AATT	3 cut(s)	60, 111, 150
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TseI	GCWGC	2 cut(s)	268, 271
TspDTI	ATGAA	1 cut(s)	162
XapI	RAATTY	1 cut(s)	60
XmiI	GTMKAC	1 cut(s)	180
XmnI	GAANNNNTTC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.