Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006520

Physical Location & Seq

Genomic Coordinates Forward (+)

36845804 .. 36850029

Gene Structure 4226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G429500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGAGAGGCTCCAAGACTGTCGTTAGCGATACTGACTCGTCCGCCACCCAGTCTGACAGCTCCGCCACCAAGACCGATTCCGACATGATCGACGGTGAAGACGAAGAAGTTTCCGCTCCTTCCCCCGATTCATGCCCCTTCTCCGAAGGCGAGAAGGTGCTCGCTTTTCATGAGACCCAAATTTACGAAGCCAAGGTGACCAAAGTCGATTTCAAGATGAACGAATGGAGATTTTATGTTCATTACCTTGGATGGAGCAAAAATTGGGATGAGTGGGTACACTTGGATCGTCTGATGAAAAACACTGATGAGAATGTGAGGAAACAAGAGCAGCTCAATGCGAACCAGAGAACACACAAGAATGCAAAGCTAACACGCACGTCACAAACTAAACAAAAAGTATCAAGAGGAAAAAAGCGAAAGAATGACTCTGTCATTAAGGACAAAGATGCCATACCCATGGAAGATCTTGTGCTTCAAATTCCGCTCACACTAAAGAAACAACTAGTTGATGATTGTGAATTCATTACTCATCTGGGCAAGCTTGTTAAACTTCCACGAACTCCTAACGTGGATGACATAATGAAGAAGTATCTAGATTACAGATCAAAGGACAGTTTGAAGAAAACTCACTCAGTTGAAGAAATCCTGAAAGGACTGTGTTGTTACTTTGACAAAGCACTACCAGTAATGCTTCTATACAAAAATGAACGTCAGCAGTATGAGAAAGCAATTGCACATGATGCCTCTCCTTCATCTGTATATGGTGCTGAGCATCTGTTACGTCTATTCGTTAAGCTCCCTGAGTTATTGTTGAATGCTAACATTGAAGAGGAGACACTGAAAGATTTGCAGCAAAAATTGATGATGTTGAAGCGAGCACCAACAAACCAGATGTTTAAGCGGGGGCATACTTGCAACAATTTGTACATAATACCATATAACCACAGCTGTTGTGAGATGTCTCAGCGCCGTTTTCAACTTCTGCGCTCCAAAAGCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016573 GO:0016575 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0031248 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035267 GO:0035601 GO:0036211 GO:0040029 GO:0040034 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1902679 GO:1903506 GO:1903507 GO:1990188 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRG Tudor-knot

Protein Analysis

335

Amino Acids

38.77

Weight (kDa)

8.71

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02740
fragaria_vesca	FvH4_2g33880 FvH4_2g33880 FvH4_2g33880 FvH4_2g33880 FvH4_2g33880
malus_domestica	MD08G1091800.v1.1 MD12G1169000.v1.1 MD15G1076200.v1.1
prunus_persica	Prupe.1G429500_v2.0.a1
pyrus_communis	pycom08g07450
rosa_chinensis	RchiOBHm_Chr6g0308521 RchiOBHm_Chr6g0308621
rosa_laevigata	RLG00000010635
rosa_multiflora	Rmu_sc0001161.1_g000019
rosa_roxburghii	Rroxscaffold_7G00160050
rosa_rugosa	Rorug06G0367500 Rorug06G0367600
rosa_samantha	Rh6AG477400 Rh6AG477700 Rh6AG478100 Rh6BG487700 Rh6CG492700 Rh6DG478900
rosa_wichuraiana	Rw6G041660 Rw6G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	116, 487
AciI	CCGC	5 cut(s)	42, 63, 114, 485, 904
AclWI	GGATC	1 cut(s)	294
AcsI	RAATTY	3 cut(s)	180, 480, 521
AfaI	GTAC	2 cut(s)	279, 929
AgsI	TTSAA	8 cut(s)	214, 479, 622, 641, 817, 830, 874, 980
AhlI	ACTAGT	1 cut(s)	505
AjiI	CACGTC	1 cut(s)	381
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AluBI	AGCT	7 cut(s)	60, 334, 370, 544, 799, 951, 999
AluI	AGCT	7 cut(s)	60, 334, 370, 544, 799, 951, 999
Alw21I	GWGCWC	2 cut(s)	162, 883
Alw26I	GTCTC	3 cut(s)	167, 830, 969
AlwI	GGATC	1 cut(s)	294
ApeKI	GCWGC	2 cut(s)	331, 853
ApoI	RAATTY	3 cut(s)	180, 480, 521
AspLEI	GCGC	2 cut(s)	972, 990
AsuHPI	GGTGA	2 cut(s)	107, 208
BbsI	GAAGAC	1 cut(s)	105
Bbv12I	GWGCWC	2 cut(s)	162, 883
BbvI	GCAGC	2 cut(s)	343, 865
BccI	CCATC	1 cut(s)	246
BceAI	ACGGC	1 cut(s)	957
BcoDI	GTCTC	3 cut(s)	167, 830, 969
BcuI	ACTAGT	1 cut(s)	505
BfaI	CTAG	2 cut(s)	506, 596
BfoI	RGCGCY	1 cut(s)	973
BglII	AGATCT	1 cut(s)	466
BisI	GCNGC	2 cut(s)	332, 854
BlpI	GCTNAGC	1 cut(s)	771
BlsI	GCNGC	2 cut(s)	333, 855
BmgBI	CACGTC	1 cut(s)	381
BmiI	GGNNCC	1 cut(s)	10
BmrI	ACTGGG	1 cut(s)	43
BmsI	GCATC	3 cut(s)	439, 733, 784
BmuI	ACTGGG	1 cut(s)	43
BoxI	GACNNNNGTC	1 cut(s)	203
BpiI	GAAGAC	1 cut(s)	105
Bpu1102I	GCTNAGC	1 cut(s)	771
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	3 cut(s)	192, 247, 459
Bse1I	ACTGG	2 cut(s)	49, 686
BseDI	CCNNGG	3 cut(s)	192, 247, 459
BseGI	GGATG	3 cut(s)	257, 274, 580
BseMII	CTCAG	4 cut(s)	648, 762, 795, 980
BseNI	ACTGG	2 cut(s)	49, 686
BseRI	GAGGAG	1 cut(s)	848
BseXI	GCAGC	2 cut(s)	343, 865
BsiHKAI	GWGCWC	2 cut(s)	162, 883
BsmAI	GTCTC	3 cut(s)	167, 830, 969
BsmI	GAATGC	2 cut(s)	367, 823
Bso31I	GGTCTC	1 cut(s)	167
Bsp1286I	GDGCHC	2 cut(s)	162, 883
Bsp1407I	TGTACA	1 cut(s)	927
Bsp143I	GATC	4 cut(s)	87, 286, 466, 605
Bsp1720I	GCTNAGC	1 cut(s)	771
Bsp19I	CCATGG	1 cut(s)	459
BspACI	CCGC	5 cut(s)	42, 63, 114, 485, 904
BspCNI	CTCAG	4 cut(s)	647, 763, 796, 979
BspHI	TCATGA	1 cut(s)	169
BspLI	GGNNCC	1 cut(s)	10
BspPI	GGATC	1 cut(s)	294
BspTNI	GGTCTC	1 cut(s)	167
BsrBI	CCGCTC	2 cut(s)	116, 487
BsrGI	TGTACA	1 cut(s)	927
BsrI	ACTGG	2 cut(s)	49, 686
BssECI	CCNNGG	3 cut(s)	192, 247, 459
BssMI	GATC	4 cut(s)	87, 286, 466, 605
BssT1I	CCWWGG	3 cut(s)	192, 247, 459
Bst4CI	ACNGT	4 cut(s)	19, 95, 617, 660
Bst6I	CTCTTC	1 cut(s)	825
BstAPI	GCANNNNNTGC	1 cut(s)	743
BstAUI	TGTACA	1 cut(s)	927
BstC8I	GCNNGC	3 cut(s)	162, 542, 879
BstDEI	CTNAG	4 cut(s)	634, 771, 804, 966
BstDSI	CCRYGG	1 cut(s)	459
BstEII	GGTNACC	1 cut(s)	196
BstF5I	GGATG	3 cut(s)	257, 274, 580
BstH2I	RGCGCY	1 cut(s)	973
BstHHI	GCGC	2 cut(s)	972, 990
BstKTI	GATC	4 cut(s)	90, 289, 469, 608
BstMAI	GTCTC	3 cut(s)	167, 830, 969
BstMBI	GATC	4 cut(s)	87, 286, 466, 605
BstMWI	GCNNNNNNNGC	2 cut(s)	743, 996
BstPAI	GACNNNNGTC	1 cut(s)	203
BstPI	GGTNACC	1 cut(s)	196
BstV1I	GCAGC	2 cut(s)	343, 865
BstV2I	GAAGAC	1 cut(s)	105
BstX2I	RGATCY	1 cut(s)	466
BstXI	CCANNNNNNTGG	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	466
BtgI	CCRYGG	1 cut(s)	459
BtrI	CACGTC	1 cut(s)	381
BtsCI	GGATG	3 cut(s)	257, 274, 580
BtsIMutI	CAGTG	2 cut(s)	303, 839
Cac8I	GCNNGC	3 cut(s)	162, 542, 879
CciI	TCATGA	1 cut(s)	169
CfoI	GCGC	2 cut(s)	972, 990
Csp6I	GTAC	2 cut(s)	278, 928
CspCI	CAANNNNNGTGG	2 cut(s)	935, 970
CviAII	CATG	5 cut(s)	85, 132, 170, 460, 740
CviJI	RGCY	9 cut(s)	9, 60, 191, 334, 370, 544, 799, 951, 999
CviKI_1	RGCY	9 cut(s)	9, 60, 191, 334, 370, 544, 799, 951, 999
CviQI	GTAC	2 cut(s)	278, 928
DdeI	CTNAG	4 cut(s)	634, 771, 804, 966
DpnI	GATC	4 cut(s)	89, 288, 468, 607
DpnII	GATC	4 cut(s)	87, 286, 466, 605
Eam1104I	CTCTTC	1 cut(s)	825
EarI	CTCTTC	1 cut(s)	825
EciI	GGCGGA	2 cut(s)	31, 52
Eco130I	CCWWGG	3 cut(s)	192, 247, 459
Eco31I	GGTCTC	1 cut(s)	167
Eco91I	GGTNACC	1 cut(s)	196
EcoO65I	GGTNACC	1 cut(s)	196
EcoRI	GAATTC	1 cut(s)	521
EcoT14I	CCWWGG	3 cut(s)	192, 247, 459
ErhI	CCWWGG	3 cut(s)	192, 247, 459
FaeI	CATG	5 cut(s)	88, 135, 173, 463, 743
FatI	CATG	5 cut(s)	84, 131, 169, 459, 739
FauI	CCCGC	1 cut(s)	897
Fnu4HI	GCNGC	2 cut(s)	332, 854
FokI	GGATG	3 cut(s)	264, 281, 587
Fsp4HI	GCNGC	2 cut(s)	332, 854
FspBI	CTAG	2 cut(s)	506, 596
GlaI	GCGC	2 cut(s)	971, 989
GluI	GCNGC	2 cut(s)	332, 854
HaeII	RGCGCY	1 cut(s)	973
HhaI	GCGC	2 cut(s)	972, 990
Hin1II	CATG	5 cut(s)	88, 135, 173, 463, 743
Hin6I	GCGC	2 cut(s)	970, 988
HinP1I	GCGC	2 cut(s)	970, 988
HindIII	AAGCTT	1 cut(s)	542
HinfI	GANTC	4 cut(s)	35, 77, 128, 428
HphI	GGTGA	2 cut(s)	107, 208
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	4 cut(s)	55, 82, 145, 294
Hpy188III	TCNNGA	5 cut(s)	170, 214, 405, 596, 649
Hpy8I	GTNNAC	1 cut(s)	280
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	5 cut(s)	129, 140, 148, 148, 762
HpyCH4III	ACNGT	4 cut(s)	19, 95, 617, 660
HpyCH4IV	ACGT	4 cut(s)	380, 570, 712, 784
HpyCH4V	TGCA	4 cut(s)	365, 737, 853, 918
HpyF10VI	GCNNNNNNNGC	2 cut(s)	743, 996
HpyF3I	CTNAG	4 cut(s)	634, 771, 804, 966
HpySE526I	ACGT	4 cut(s)	380, 570, 712, 784
Hsp92II	CATG	5 cut(s)	88, 135, 173, 463, 743
HspAI	GCGC	2 cut(s)	970, 988
Kzo9I	GATC	4 cut(s)	87, 286, 466, 605
LmnI	GCTCC	6 cut(s)	14, 65, 121, 255, 804, 995
LpnPI	CCDG	7 cut(s)	62, 359, 521, 662, 699, 816, 905
Lsp1109I	GCAGC	2 cut(s)	343, 865
LweI	GCATC	3 cut(s)	439, 733, 784
MaeI	CTAG	2 cut(s)	506, 596
MaeII	ACGT	4 cut(s)	380, 570, 712, 784
MaeIII	GTNAC	4 cut(s)	196, 381, 665, 780
MalI	GATC	4 cut(s)	89, 288, 468, 607
MbiI	CCGCTC	2 cut(s)	116, 487
MboI	GATC	4 cut(s)	87, 286, 466, 605
MboII	GAAGA	7 cut(s)	110, 116, 476, 598, 634, 653, 842
MfeI	CAATTG	1 cut(s)	732
MflI	RGATCY	1 cut(s)	466
MhlI	GDGCHC	2 cut(s)	162, 883
MluCI	AATT	7 cut(s)	180, 262, 480, 521, 732, 860, 922
MlyI	GAGTC	2 cut(s)	29, 422
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	4 cut(s)	312, 401, 757, 826
MseI	TTAA	4 cut(s)	438, 549, 795, 900
MslI	CAYNNNNRTG	2 cut(s)	360, 458
MspA1I	CMGCKG	1 cut(s)	951
MunI	CAATTG	1 cut(s)	732
Mva1269I	GAATGC	2 cut(s)	367, 823
MwoI	GCNNNNNNNGC	2 cut(s)	743, 996
NcoI	CCATGG	1 cut(s)	459
NdeII	GATC	4 cut(s)	87, 286, 466, 605
NlaIII	CATG	5 cut(s)	88, 135, 173, 463, 743
NlaIV	GGNNCC	1 cut(s)	10
NmuCI	GTSAC	2 cut(s)	196, 381
PagI	TCATGA	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	2 cut(s)	367, 823
PfeI	GAWTC	2 cut(s)	77, 128
PflFI	GACNNNGTC	1 cut(s)	431
PkrI	GCNGC	2 cut(s)	333, 855
PleI	GAGTC	2 cut(s)	29, 422
PpsI	GAGTC	2 cut(s)	29, 422
PshAI	GACNNNNGTC	1 cut(s)	203
PspEI	GGTNACC	1 cut(s)	196
PspN4I	GGNNCC	1 cut(s)	10
PsuI	RGATCY	1 cut(s)	466
PsyI	GACNNNGTC	1 cut(s)	431
PvuII	CAGCTG	1 cut(s)	951
RsaI	GTAC	2 cut(s)	279, 929
RsaNI	GTAC	2 cut(s)	278, 928
RseI	CAYNNNNRTG	2 cut(s)	360, 458
SaqAI	TTAA	4 cut(s)	438, 549, 795, 900
SatI	GCNGC	2 cut(s)	332, 854
Sau3AI	GATC	4 cut(s)	87, 286, 466, 605
SchI	GAGTC	2 cut(s)	29, 422
SduI	GDGCHC	2 cut(s)	162, 883
SfaNI	GCATC	3 cut(s)	439, 733, 784
SmiMI	CAYNNNNRTG	2 cut(s)	360, 458
SpeI	ACTAGT	1 cut(s)	505
Sse9I	AATT	7 cut(s)	180, 262, 480, 521, 732, 860, 922
SsiI	CCGC	5 cut(s)	42, 63, 114, 485, 904
SspMI	CTAG	2 cut(s)	506, 596
StyI	CCWWGG	3 cut(s)	192, 247, 459
TaaI	ACNGT	4 cut(s)	19, 95, 617, 660
TaiI	ACGT	4 cut(s)	383, 573, 715, 787
TaqI	TCGA	2 cut(s)	90, 207
TaqII	GACCGA	1 cut(s)	89
TasI	AATT	7 cut(s)	180, 262, 480, 521, 732, 860, 922
TatI	WGTACW	1 cut(s)	927
TfiI	GAWTC	2 cut(s)	77, 128
Tru1I	TTAA	4 cut(s)	438, 549, 795, 900
Tru9I	TTAA	4 cut(s)	438, 549, 795, 900
TscAI	CASTG	2 cut(s)	310, 846
TseFI	GTSAC	2 cut(s)	196, 381
TseI	GCWGC	2 cut(s)	331, 853
Tsp45I	GTSAC	2 cut(s)	196, 381
TspDTI	ATGAA	9 cut(s)	120, 158, 230, 233, 311, 514, 599, 723, 744
TspRI	CASTG	2 cut(s)	310, 846
Tth111I	GACNNNGTC	1 cut(s)	431
XapI	RAATTY	3 cut(s)	180, 480, 521
XbaI	TCTAGA	1 cut(s)	595
XspI	CTAG	2 cut(s)	506, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.