Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0006520

Physical Location & Seq

Genomic Coordinates Forward (+)

65941364 .. 65942917

Gene Structure 1554 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG478100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGATCTTTCTGGTTATGCTGAAAGCTCATTCAGTTGAAGAAATTCTGAAAGGACTATGTTGCTACTTTGACAAAGCATTGCCAGTTATCCTAATTCTTTACAAAAATGAGCGTCCGCAGTATGAGAAAGCAATTGCAGATAATGTCTCTCCTTCATCTGTATACGGTGCTGAGCATCTATTACGCCTCTTTGTTAAACTGCCCGAGCTATTGGTTGAGGCTAACATTGAAGAGGAGACTTTGAAAGAGCTGCTGCAAAGATTGGCCGACTTTCTCAAGTACCGACTTCAACTTTCTTCTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016573 GO:0016575 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0031248 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035267 GO:0035601 GO:0036211 GO:0040029 GO:0040034 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1902679 GO:1903506 GO:1903507 GO:1990188 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRG Tudor-knot

Protein Analysis

101

Amino Acids

11.7

Weight (kDa)

6.11

Isoelectric Point (pI)

51.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRG	PF05712	11 - 94	6.2e-24	MRG

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02740
fragaria_vesca	FvH4_2g33880 FvH4_2g33880 FvH4_2g33880 FvH4_2g33880 FvH4_2g33880
malus_domestica	MD08G1091800.v1.1 MD12G1169000.v1.1 MD15G1076200.v1.1
prunus_persica	Prupe.1G429500_v2.0.a1
pyrus_communis	pycom08g07450
rosa_chinensis	RchiOBHm_Chr6g0308521 RchiOBHm_Chr6g0308621
rosa_laevigata	RLG00000010635
rosa_multiflora	Rmu_sc0001161.1_g000019
rosa_roxburghii	Rroxscaffold_7G00160050
rosa_rugosa	Rorug06G0367500 Rorug06G0367600
rosa_samantha	Rh6AG477400 Rh6AG477700 Rh6AG478100 Rh6BG487700 Rh6CG492700 Rh6DG478900
rosa_wichuraiana	Rw6G041660 Rw6G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	162
AciI	CCGC	1 cut(s)	116
AcoI	YGGCCR	1 cut(s)	264
AcsI	RAATTY	1 cut(s)	42
AfaI	GTAC	1 cut(s)	281
AgsI	TTSAA	4 cut(s)	38, 230, 244, 290
AluBI	AGCT	3 cut(s)	26, 208, 250
AluI	AGCT	3 cut(s)	26, 208, 250
Alw26I	GTCTC	2 cut(s)	151, 230
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	2 cut(s)	250, 253
ApoI	RAATTY	1 cut(s)	42
Asp700I	GAANNNNTTC	1 cut(s)	42
AvaI	CYCGRG	1 cut(s)	203
BbvI	GCAGC	2 cut(s)	237, 240
BcoDI	GTCTC	2 cut(s)	151, 230
BisI	GCNGC	2 cut(s)	251, 254
BlpI	GCTNAGC	1 cut(s)	171
BlsI	GCNGC	2 cut(s)	252, 255
BmeT110I	CYCGRG	1 cut(s)	203
BmsI	GCATC	1 cut(s)	184
Bpu1102I	GCTNAGC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	260
Bse1I	ACTGG	1 cut(s)	83
Bse3DI	GCAATG	1 cut(s)	77
BseMI	GCAATG	1 cut(s)	77
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	83
BseRI	GAGGAG	1 cut(s)	248
BseXI	GCAGC	2 cut(s)	237, 240
BshFI	GGCC	1 cut(s)	266
BsiHKCI	CYCGRG	1 cut(s)	203
BsmAI	GTCTC	2 cut(s)	151, 230
BsnI	GGCC	1 cut(s)	266
BsoBI	CYCGRG	1 cut(s)	203
Bsp143I	GATC	1 cut(s)	3
Bsp1720I	GCTNAGC	1 cut(s)	171
BspACI	CCGC	1 cut(s)	116
BspANI	GGCC	1 cut(s)	266
BspCNI	CTCAG	1 cut(s)	163
BsrDI	GCAATG	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	83
BssMI	GATC	1 cut(s)	3
BssNAI	GTATAC	1 cut(s)	163
Bst1107I	GTATAC	1 cut(s)	163
Bst4CI	ACNGT	1 cut(s)	167
Bst6I	CTCTTC	1 cut(s)	225
BstDEI	CTNAG	1 cut(s)	171
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	2 cut(s)	151, 230
BstMBI	GATC	1 cut(s)	3
BstV1I	GCAGC	2 cut(s)	237, 240
BstZ17I	GTATAC	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	266
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	280
CviJI	RGCY	5 cut(s)	26, 208, 221, 250, 266
CviKI_1	RGCY	5 cut(s)	26, 208, 221, 250, 266
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
EaeI	YGGCCR	1 cut(s)	264
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco88I	CYCGRG	1 cut(s)	203
FaiI	YATR	4 cut(s)	17, 58, 123, 163
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	2 cut(s)	251, 254
Fsp4HI	GCNGC	2 cut(s)	251, 254
GluI	GCNGC	2 cut(s)	251, 254
HaeIII	GGCC	1 cut(s)	266
HgaI	GACGC	1 cut(s)	101
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	1 cut(s)	48
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	162
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4V	TGCA	2 cut(s)	137, 256
HpyF3I	CTNAG	1 cut(s)	171
Kzo9I	GATC	1 cut(s)	3
LpnPI	CCDG	1 cut(s)	96
Lsp1109I	GCAGC	2 cut(s)	237, 240
LweI	GCATC	1 cut(s)	184
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	3 cut(s)	50, 242, 288
MfeI	CAATTG	1 cut(s)	132
MluCI	AATT	3 cut(s)	42, 93, 132
MnlI	CCTC	3 cut(s)	197, 211, 226
MroXI	GAANNNNTTC	1 cut(s)	42
MseI	TTAA	1 cut(s)	195
MunI	CAATTG	1 cut(s)	132
NdeII	GATC	1 cut(s)	3
PdmI	GAANNNNTTC	1 cut(s)	42
PkrI	GCNGC	2 cut(s)	252, 255
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	2 cut(s)	251, 254
Sau3AI	GATC	1 cut(s)	3
SetI	ASST	3 cut(s)	28, 210, 252
SfaNI	GCATC	1 cut(s)	184
SgeI	CNNG	5 cut(s)	23, 95, 215, 217, 289
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	3 cut(s)	42, 93, 132
SsiI	CCGC	1 cut(s)	116
TaaI	ACNGT	1 cut(s)	167
TasI	AATT	3 cut(s)	42, 93, 132
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TseI	GCWGC	2 cut(s)	250, 253
TspDTI	ATGAA	1 cut(s)	144
XapI	RAATTY	1 cut(s)	42
XmiI	GTMKAC	1 cut(s)	162
XmnI	GAANNNNTTC	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.