Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006520

Physical Location & Seq

Genomic Coordinates Forward (+)

51494394 .. 51497208

Gene Structure 2815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0367600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGTCTCCACCGTCTACTCTTACACATGGTGTGTATTCTCACTTCTCAGAAACCCAGCTCCATATTCTTCCTTTCGGTGACCTGAACAGATTTTTTTCACTTGGGCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACTGTTATCCAGCTTTCAACCATGAACATGAACAATGGGTATAGAGAACCAGACAACTCGTTTTGCTATTTCCACCCAAAAGAGGTGGTTGTGGGGGTCTGTGCCCTGTGCTTGACTGAGAGGCTTCTCGAATTGGCTGCCAGAAAAGGCCGCCATAGAAGCACCCAAAGCTTCAGTCACAGACCCATTACTCTTCCAAAGATCTTTGCTTTCAGCTCTTTCCTCAATCGGAAGCCAGATTACTTGGATCAAGAAGCTTCCACCAGCCAAGAAGATTCATTCATATCAATCAAGTTTGAAGAGAATGGAGTTGCCTCGTGGGAGAAGAACAAGGTATCCAAAGTCTCTTTAGACCATTGCAACATGCCCTGGAATCACAACTTTAGCAAAGACTCCAAGGATGCCAAAGAGACCAAGAGTGTGATAGAGCATGGGAAAGCTCATACACCACTTAGGTGGCGGAAGCGGATCGGACATCTCTTCCAGCTCAATAGATGGAAGAGATCCAACAAGGGCAGTGTGTGCCATGTGAGCAACAAGGTAGAAGGAGTCAAGGTAAGGAAGGGCTGGATAAGAAGTCTGACAAAGAGGAGAGGGTCCATGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016573 GO:0016575 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0031248 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035267 GO:0035601 GO:0036211 GO:0040029 GO:0040034 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1902679 GO:1903506 GO:1903507 GO:1990188 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRG Tudor-knot

Protein Analysis

251

Amino Acids

29.29

Weight (kDa)

9.82

Isoelectric Point (pI)

47.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02740
fragaria_vesca	FvH4_2g33880 FvH4_2g33880 FvH4_2g33880 FvH4_2g33880 FvH4_2g33880
malus_domestica	MD08G1091800.v1.1 MD12G1169000.v1.1 MD15G1076200.v1.1
prunus_persica	Prupe.1G429500_v2.0.a1
pyrus_communis	pycom08g07450
rosa_chinensis	RchiOBHm_Chr6g0308521 RchiOBHm_Chr6g0308621
rosa_laevigata	RLG00000010635
rosa_multiflora	Rmu_sc0001161.1_g000019
rosa_roxburghii	Rroxscaffold_7G00160050
rosa_rugosa	Rorug06G0367500 Rorug06G0367600
rosa_samantha	Rh6AG477400 Rh6AG477700 Rh6AG478100 Rh6BG487700 Rh6CG492700 Rh6DG478900
rosa_wichuraiana	Rw6G041660 Rw6G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	14
AciI	CCGC	3 cut(s)	298, 607, 613
AclWI	GGATC	3 cut(s)	402, 623, 645
AcuI	CTGAAG	1 cut(s)	304
AdeI	CACNNNGTG	1 cut(s)	29
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	2 cut(s)	165, 446
AjnI	CCWGG	1 cut(s)	515
AleI	CACNNNNGTG	1 cut(s)	601
AloI	GAACNNNNNNTCC	2 cut(s)	467, 499
AluBI	AGCT	7 cut(s)	58, 160, 318, 363, 404, 587, 634
AluI	AGCT	7 cut(s)	58, 160, 318, 363, 404, 587, 634
Alw26I	GTCTC	3 cut(s)	9, 496, 551
AlwI	GGATC	3 cut(s)	402, 623, 645
AoxI	GGCC	1 cut(s)	295
ApeKI	GCWGC	1 cut(s)	284
ArsI	GACNNNNNNTTYG	2 cut(s)	307, 339
AspS9I	GGNCC	1 cut(s)	744
AsuHPI	GGTGA	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	744
BaeGI	GKGCMC	1 cut(s)	253
BarI	GAAGNNNNNNTAC	4 cut(s)	26, 58, 371, 403
BauI	CACGAG	1 cut(s)	463
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	1 cut(s)	636
BcgI	CGANNNNNNTGC	2 cut(s)	266, 300
BciT130I	CCWGG	1 cut(s)	517
BciVI	GTATCC	1 cut(s)	493
BcoDI	GTCTC	3 cut(s)	9, 496, 551
BfuI	GTATCC	1 cut(s)	493
BglII	AGATCT	1 cut(s)	348
BisI	GCNGC	2 cut(s)	285, 298
BlsI	GCNGC	2 cut(s)	286, 299
Bme1390I	CCNGG	1 cut(s)	517
Bme18I	GGWCC	1 cut(s)	744
BmgT120I	GGNCC	1 cut(s)	744
BmiI	GGNNCC	1 cut(s)	745
BmrFI	CCNGG	1 cut(s)	517
BmsI	GCATC	1 cut(s)	538
BsaI	GGTCTC	1 cut(s)	551
BsaJI	CCNNGG	3 cut(s)	515, 543, 747
BsaXI	ACNNNNNCTCC	2 cut(s)	687, 717
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse3DI	GCAATG	1 cut(s)	502
BseBI	CCWGG	1 cut(s)	517
BseDI	CCNNGG	3 cut(s)	515, 543, 747
BseGI	GGATG	1 cut(s)	553
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	1 cut(s)	502
BseMII	CTCAG	2 cut(s)	60, 255
BseRI	GAGGAG	1 cut(s)	751
BseSI	GKGCMC	1 cut(s)	253
BseXI	GCAGC	1 cut(s)	271
BseYI	CCCAGC	1 cut(s)	54
BshFI	GGCC	1 cut(s)	297
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	3 cut(s)	9, 496, 551
BsnI	GGCC	1 cut(s)	297
Bso31I	GGTCTC	1 cut(s)	551
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp143I	GATC	4 cut(s)	348, 394, 615, 650
Bsp19I	CCATGG	1 cut(s)	747
BspACI	CCGC	3 cut(s)	298, 607, 613
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	2 cut(s)	59, 256
BspLI	GGNNCC	1 cut(s)	745
BspPI	GGATC	3 cut(s)	402, 623, 645
BspTNI	GGTCTC	1 cut(s)	551
BsrDI	GCAATG	1 cut(s)	502
BssECI	CCNNGG	3 cut(s)	515, 543, 747
BssMI	GATC	4 cut(s)	348, 394, 615, 650
BssSI	CACGAG	1 cut(s)	463
BssT1I	CCWWGG	2 cut(s)	543, 747
Bst2BI	CACGAG	1 cut(s)	463
Bst2UI	CCWGG	1 cut(s)	517
Bst4CI	ACNGT	2 cut(s)	12, 151
Bst6I	CTCTTC	5 cut(s)	116, 345, 441, 632, 641
BstAPI	GCANNNNNTGC	1 cut(s)	669
BstDEI	CTNAG	3 cut(s)	46, 264, 599
BstDSI	CCRYGG	1 cut(s)	747
BstEII	GGTNACC	1 cut(s)	77
BstF5I	GGATG	1 cut(s)	553
BstKTI	GATC	4 cut(s)	351, 397, 618, 653
BstMAI	GTCTC	3 cut(s)	9, 496, 551
BstMBI	GATC	4 cut(s)	348, 394, 615, 650
BstMWI	GCNNNNNNNGC	4 cut(s)	306, 315, 669, 678
BstNI	CCWGG	1 cut(s)	517
BstNSI	RCATGY	1 cut(s)	514
BstPI	GGTNACC	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	515
BstSLI	GKGCMC	1 cut(s)	253
BstV1I	GCAGC	1 cut(s)	271
BstX2I	RGATCY	2 cut(s)	348, 650
BstXI	CCANNNNNNTGG	1 cut(s)	603
BstYI	RGATCY	2 cut(s)	348, 650
BsuI	GTATCC	1 cut(s)	493
BsuRI	GGCC	1 cut(s)	297
BtgI	CCRYGG	1 cut(s)	747
BtsCI	GGATG	1 cut(s)	553
BtsI	GCAGTG	1 cut(s)	670
BtsIMutI	CAGTG	2 cut(s)	147, 670
Cfr13I	GGNCC	1 cut(s)	744
CspCI	CAANNNNNGTGG	2 cut(s)	213, 248
CviAII	CATG	7 cut(s)	26, 169, 175, 511, 578, 674, 748
DdeI	CTNAG	3 cut(s)	46, 264, 599
DpnI	GATC	4 cut(s)	350, 396, 617, 652
DpnII	GATC	4 cut(s)	348, 394, 615, 650
DraIII	CACNNNGTG	1 cut(s)	29
Eam1104I	CTCTTC	5 cut(s)	116, 345, 441, 632, 641
EarI	CTCTTC	5 cut(s)	116, 345, 441, 632, 641
EciI	GGCGGA	1 cut(s)	622
Eco130I	CCWWGG	2 cut(s)	543, 747
Eco31I	GGTCTC	1 cut(s)	551
Eco47I	GGWCC	1 cut(s)	744
Eco57I	CTGAAG	1 cut(s)	304
Eco91I	GGTNACC	1 cut(s)	77
EcoO65I	GGTNACC	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	515
EcoT14I	CCWWGG	2 cut(s)	543, 747
ErhI	CCWWGG	2 cut(s)	543, 747
FaeI	CATG	7 cut(s)	29, 172, 178, 514, 581, 677, 751
FatI	CATG	7 cut(s)	25, 168, 174, 510, 577, 673, 747
FblI	GTMKAC	1 cut(s)	14
Fnu4HI	GCNGC	2 cut(s)	285, 298
FokI	GGATG	1 cut(s)	560
Fsp4HI	GCNGC	2 cut(s)	285, 298
GluI	GCNGC	2 cut(s)	285, 298
GsaI	CCCAGC	1 cut(s)	58
HaeIII	GGCC	1 cut(s)	297
Hin1II	CATG	7 cut(s)	29, 172, 178, 514, 581, 677, 751
HindIII	AAGCTT	2 cut(s)	316, 402
HinfI	GANTC	4 cut(s)	422, 520, 539, 696
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	4 cut(s)	49, 378, 620, 729
Hpy188III	TCNNGA	2 cut(s)	275, 398
Hpy8I	GTNNAC	1 cut(s)	15
HpyAV	CCTTC	2 cut(s)	686, 703
HpyCH4III	ACNGT	2 cut(s)	12, 151
HpyCH4V	TGCA	1 cut(s)	507
HpyF10VI	GCNNNNNNNGC	4 cut(s)	306, 315, 669, 678
HpyF3I	CTNAG	3 cut(s)	46, 264, 599
Hsp92II	CATG	7 cut(s)	29, 172, 178, 514, 581, 677, 751
Kzo9I	GATC	4 cut(s)	348, 394, 615, 650
LmnI	GCTCC	1 cut(s)	63
Lsp1109I	GCAGC	1 cut(s)	271
LweI	GCATC	1 cut(s)	538
MaeIII	GTNAC	2 cut(s)	77, 323
MalI	GATC	4 cut(s)	350, 396, 617, 652
MboI	GATC	4 cut(s)	348, 394, 615, 650
MflI	RGATCY	2 cut(s)	348, 650
MhlI	GDGCHC	1 cut(s)	253
MluCI	AATT	1 cut(s)	278
MlyI	GAGTC	2 cut(s)	533, 705
MmeI	TCCRAC	1 cut(s)	678
MnlI	CCTC	6 cut(s)	223, 261, 380, 472, 729, 734
MslI	CAYNNNNRTG	2 cut(s)	173, 601
MspR9I	CCNGG	1 cut(s)	517
MvaI	CCWGG	1 cut(s)	517
MwoI	GCNNNNNNNGC	4 cut(s)	306, 315, 669, 678
NcoI	CCATGG	1 cut(s)	747
NdeII	GATC	4 cut(s)	348, 394, 615, 650
NlaIII	CATG	7 cut(s)	29, 172, 178, 514, 581, 677, 751
NlaIV	GGNNCC	1 cut(s)	745
NmuCI	GTSAC	2 cut(s)	77, 323
NspI	RCATGY	1 cut(s)	514
OliI	CACNNNNGTG	1 cut(s)	601
PfeI	GAWTC	2 cut(s)	422, 520
PkrI	GCNGC	2 cut(s)	286, 299
PleI	GAGTC	2 cut(s)	533, 704
PpsI	GAGTC	2 cut(s)	533, 704
Psp6I	CCWGG	1 cut(s)	515
PspEI	GGTNACC	1 cut(s)	77
PspFI	CCCAGC	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	515
PspN4I	GGNNCC	1 cut(s)	745
PspPI	GGNCC	1 cut(s)	744
PsuI	RGATCY	2 cut(s)	348, 650
RseI	CAYNNNNRTG	2 cut(s)	173, 601
SatI	GCNGC	2 cut(s)	285, 298
Sau3AI	GATC	4 cut(s)	348, 394, 615, 650
Sau96I	GGNCC	1 cut(s)	744
SchI	GAGTC	2 cut(s)	533, 705
ScrFI	CCNGG	1 cut(s)	517
SduI	GDGCHC	1 cut(s)	253
SfaNI	GCATC	1 cut(s)	538
SinI	GGWCC	1 cut(s)	744
SmiMI	CAYNNNNRTG	2 cut(s)	173, 601
Sse9I	AATT	1 cut(s)	278
SsiI	CCGC	3 cut(s)	298, 607, 613
StyD4I	CCNGG	1 cut(s)	515
StyI	CCWWGG	2 cut(s)	543, 747
TaaI	ACNGT	2 cut(s)	12, 151
TaqI	TCGA	1 cut(s)	276
TasI	AATT	1 cut(s)	278
TauI	GCSGC	1 cut(s)	300
TfiI	GAWTC	2 cut(s)	422, 520
TscAI	CASTG	2 cut(s)	154, 670
TseFI	GTSAC	2 cut(s)	77, 323
TseI	GCWGC	1 cut(s)	284
Tsp45I	GTSAC	2 cut(s)	77, 323
TspDTI	ATGAA	4 cut(s)	185, 191, 414, 418
TspRI	CASTG	2 cut(s)	154, 670
VpaK11BI	GGWCC	1 cut(s)	744
XceI	RCATGY	1 cut(s)	514
XmiI	GTMKAC	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.