Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0006520

Physical Location & Seq

Genomic Coordinates Forward (+)

7663068 .. 7666871

Gene Structure 3804 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1091800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGAGACGCAGAGGCTCCAAGTCCAAGAGTGTGGTGAGTGATACTACTGACACTGATTCGTCCGCCACCGAGTCCGACAGCTCCGCCACCAAGACCGATTCCGACATGGTCGACAACGAAAACGACGACGCTTCCTCCCCTTCCTCCGATTCCTGCCCCTTCGCCGAGGGCGAGAGGGTCATCGCCTTTCACAACCATCGACTGTACGCGGCCAAGGTGACCAATATCCGATACAAGATGGAATGGGAGTTTTATGTTCATTACCTTGGATGGAGCAAAAATTGGGATGAGTGGGTAGGGGTGGATCGTCTGATGAAAAACACTGAAGAGAATAGGAAGAAACAAGAGGCCATCAAACAGAAACAGGGAGCAGACAAGAATGCGAAGCTAAAACACATGTCGCAGACTAAACCAAAAAGTTATCATGCGTCAAGAGGGAAGAAGCGAAAGAATGACTCTGTTAATAAGGACAAAGATGCCATACCGATGGAAGATCTCTTGCTTCAGATGCCACAACCACTAAAGAAACAACTAGTTGATGATTGTGAATTCATTACTGATCTGGGCAAGCTTGTTAAACTTCCACGTACTCCAAATGTGAATGACATATTCAAGAAGTATCTCGACTACAGATCAAAGAAGGACAGTATGAAGAAAGCTCAATCTATTGAAGAAATTCTGAAAGGACTATGTTGTTACTTTGACAAAGCACTGCCGGCGATGCTTTTGTACAAAAATGAACGTCAGCAGTATGAGAAAGCAATCACAGATGATGTCTCTCCTTCATCTGTCTATGGTGCTGAGCATCTATTACGTCTCTTTGTTAAACTACCCGAGTTATTGTTGGATGCAAACATTGAAGAGGAGACACTGAAAGTGTTGCAGAAAAAATTGGTCGACTTTCTCAAGTTCCTACAGAAGAACCAGAGTGCGTTTTTCCTCTCTACCTATCATGTACCAGACGACATTGAAACCAGCACCAACAAACCAGGTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016573 GO:0016575 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0031248 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035267 GO:0035601 GO:0036211 GO:0040029 GO:0040034 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1902679 GO:1903506 GO:1903507 GO:1990188 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRG Tudor-knot

Protein Analysis

333

Amino Acids

38.21

Weight (kDa)

8.57

Isoelectric Point (pI)

51.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MSL3_chromo-like	PF22732	54 - 119	1.9e-13	MSL3 chromodomain-like
Tudor-knot	PF11717	55 - 104	2.5e-11	RNA binding activity-knot of a chromodomain
MRG	PF05712	147 - 317	1e-48	MRG

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02740
fragaria_vesca	FvH4_2g33880 FvH4_2g33880 FvH4_2g33880 FvH4_2g33880 FvH4_2g33880
malus_domestica	MD08G1091800.v1.1 MD12G1169000.v1.1 MD15G1076200.v1.1
prunus_persica	Prupe.1G429500_v2.0.a1
pyrus_communis	pycom08g07450
rosa_chinensis	RchiOBHm_Chr6g0308521 RchiOBHm_Chr6g0308621
rosa_laevigata	RLG00000010635
rosa_multiflora	Rmu_sc0001161.1_g000019
rosa_roxburghii	Rroxscaffold_7G00160050
rosa_rugosa	Rorug06G0367500 Rorug06G0367600
rosa_samantha	Rh6AG477400 Rh6AG477700 Rh6AG478100 Rh6BG487700 Rh6CG492700 Rh6DG478900
rosa_wichuraiana	Rw6G041660 Rw6G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	111, 897
AccII	CGCG	1 cut(s)	209
AciI	CCGC	3 cut(s)	63, 84, 209
AclWI	GGATC	1 cut(s)	312
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	2 cut(s)	548, 675
AcuI	CTGAAG	2 cut(s)	345, 488
AfaI	GTAC	4 cut(s)	206, 589, 731, 957
AflIII	ACRYGT	1 cut(s)	396
AgsI	TTSAA	4 cut(s)	613, 671, 860, 971
AhlI	ACTAGT	1 cut(s)	532
AjnI	CCWGG	1 cut(s)	988
AluBI	AGCT	4 cut(s)	81, 388, 571, 659
AluI	AGCT	4 cut(s)	81, 388, 571, 659
Alw26I	GTCTC	3 cut(s)	781, 821, 860
AlwI	GGATC	1 cut(s)	312
Ama87I	CYCGRG	1 cut(s)	833
AoxI	GGCC	2 cut(s)	210, 348
ApoI	RAATTY	2 cut(s)	548, 675
ArsI	GACNNNNNNTTYG	1 cut(s)	978
Asp700I	GAANNNNTTC	1 cut(s)	675
AsuHPI	GGTGA	2 cut(s)	46, 229
AvaI	CYCGRG	1 cut(s)	833
BccI	CCATC	5 cut(s)	204, 232, 264, 359, 481
BciT130I	CCWGG	1 cut(s)	990
BcoDI	GTCTC	3 cut(s)	781, 821, 860
BcuI	ACTAGT	1 cut(s)	532
BfaI	CTAG	1 cut(s)	533
BfmI	CTRYAG	2 cut(s)	628, 914
BglII	AGATCT	1 cut(s)	493
BisI	GCNGC	1 cut(s)	210
BlpI	GCTNAGC	1 cut(s)	801
BlsI	GCNGC	1 cut(s)	211
Bme1390I	CCNGG	1 cut(s)	990
BmeT110I	CYCGRG	1 cut(s)	833
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	990
BmsI	GCATC	5 cut(s)	466, 498, 711, 814, 838
Bpu1102I	GCTNAGC	1 cut(s)	801
BpuEI	CTTGAG	1 cut(s)	890
BsaAI	YACGTR	1 cut(s)	587
BsaJI	CCNNGG	3 cut(s)	165, 213, 265
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bse118I	RCCGGY	1 cut(s)	715
BseBI	CCWGG	1 cut(s)	990
BseDI	CCNNGG	3 cut(s)	165, 213, 265
BseGI	GGATG	3 cut(s)	275, 292, 853
BseMII	CTCAG	1 cut(s)	792
BseRI	GAGGAG	1 cut(s)	878
Bsh1236I	CGCG	1 cut(s)	209
BshFI	GGCC	2 cut(s)	212, 350
BsiHKCI	CYCGRG	1 cut(s)	833
BsiSI	CCGG	1 cut(s)	716
BsmAI	GTCTC	3 cut(s)	781, 821, 860
BsmBI	CGTCTC	1 cut(s)	821
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	2 cut(s)	212, 350
BsoBI	CYCGRG	1 cut(s)	833
Bsp1407I	TGTACA	1 cut(s)	729
Bsp143I	GATC	4 cut(s)	304, 493, 559, 632
Bsp1720I	GCTNAGC	1 cut(s)	801
BspACI	CCGC	3 cut(s)	63, 84, 209
BspANI	GGCC	2 cut(s)	212, 350
BspCNI	CTCAG	1 cut(s)	793
BspFNI	CGCG	1 cut(s)	209
BspLI	GGNNCC	1 cut(s)	16
BspPI	GGATC	1 cut(s)	312
BsrFI	RCCGGY	1 cut(s)	715
BsrGI	TGTACA	1 cut(s)	729
BssAI	RCCGGY	1 cut(s)	715
BssECI	CCNNGG	3 cut(s)	165, 213, 265
BssMI	GATC	4 cut(s)	304, 493, 559, 632
BssT1I	CCWWGG	2 cut(s)	213, 265
Bst2UI	CCWGG	1 cut(s)	990
Bst4CI	ACNGT	2 cut(s)	204, 647
Bst6I	CTCTTC	2 cut(s)	321, 855
BstAUI	TGTACA	1 cut(s)	729
BstBAI	YACGTR	1 cut(s)	587
BstC8I	GCNNGC	2 cut(s)	569, 717
BstDEI	CTNAG	1 cut(s)	801
BstEII	GGTNACC	1 cut(s)	217
BstF5I	GGATG	3 cut(s)	275, 292, 853
BstFNI	CGCG	1 cut(s)	209
BstKTI	GATC	4 cut(s)	307, 496, 562, 635
BstMAI	GTCTC	3 cut(s)	781, 821, 860
BstMBI	GATC	4 cut(s)	304, 493, 559, 632
BstMWI	GCNNNNNNNGC	3 cut(s)	508, 716, 721
BstNI	CCWGG	1 cut(s)	990
BstNSI	RCATGY	1 cut(s)	400
BstPI	GGTNACC	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	988
BstSFI	CTRYAG	2 cut(s)	628, 914
BstUI	CGCG	1 cut(s)	209
BstX2I	RGATCY	1 cut(s)	493
BstXI	CCANNNNNNTGG	2 cut(s)	31, 487
BstYI	RGATCY	1 cut(s)	493
BsuRI	GGCC	2 cut(s)	212, 350
BtgZI	GCGATG	2 cut(s)	166, 734
BtsCI	GGATG	3 cut(s)	275, 292, 853
BtsI	GCAGTG	1 cut(s)	710
BtsIMutI	CAGTG	4 cut(s)	51, 321, 710, 869
Cac8I	GCNNGC	2 cut(s)	569, 717
Cfr10I	RCCGGY	1 cut(s)	715
CseI	GACGC	3 cut(s)	15, 137, 417
CsiI	ACCWGGT	1 cut(s)	988
Csp6I	GTAC	4 cut(s)	205, 588, 730, 956
CviAII	CATG	4 cut(s)	106, 397, 425, 953
CviJI	RGCY	7 cut(s)	15, 81, 212, 350, 388, 571, 659
CviKI_1	RGCY	7 cut(s)	15, 81, 212, 350, 388, 571, 659
CviQI	GTAC	4 cut(s)	205, 588, 730, 956
DdeI	CTNAG	1 cut(s)	801
DpnI	GATC	4 cut(s)	306, 495, 561, 634
DpnII	GATC	4 cut(s)	304, 493, 559, 632
EaeI	YGGCCR	1 cut(s)	210
Eam1104I	CTCTTC	2 cut(s)	321, 855
EarI	CTCTTC	2 cut(s)	321, 855
EciI	GGCGGA	2 cut(s)	52, 73
Eco130I	CCWWGG	2 cut(s)	213, 265
Eco57I	CTGAAG	2 cut(s)	345, 488
Eco88I	CYCGRG	1 cut(s)	833
Eco91I	GGTNACC	1 cut(s)	217
EcoO65I	GGTNACC	1 cut(s)	217
EcoRI	GAATTC	1 cut(s)	548
EcoRII	CCWGG	1 cut(s)	988
EcoT14I	CCWWGG	2 cut(s)	213, 265
ErhI	CCWWGG	2 cut(s)	213, 265
Esp3I	CGTCTC	1 cut(s)	821
FaeI	CATG	4 cut(s)	109, 400, 428, 956
FatI	CATG	4 cut(s)	105, 396, 424, 952
FblI	GTMKAC	2 cut(s)	111, 897
Fnu4HI	GCNGC	1 cut(s)	210
FokI	GGATG	3 cut(s)	282, 299, 860
Fsp4HI	GCNGC	1 cut(s)	210
FspBI	CTAG	1 cut(s)	533
GluI	GCNGC	1 cut(s)	210
HaeIII	GGCC	2 cut(s)	212, 350
HapII	CCGG	1 cut(s)	716
HgaI	GACGC	3 cut(s)	15, 137, 417
Hin1II	CATG	4 cut(s)	109, 400, 428, 956
HincII	GTYRAC	2 cut(s)	112, 898
HindII	GTYRAC	2 cut(s)	112, 898
HindIII	AAGCTT	1 cut(s)	569
HinfI	GANTC	5 cut(s)	56, 71, 98, 149, 455
HpaII	CCGG	1 cut(s)	716
HphI	GGTGA	2 cut(s)	46, 229
Hpy166II	GTNNAC	2 cut(s)	112, 898
Hpy188I	TCNGA	7 cut(s)	76, 103, 148, 230, 312, 507, 681
Hpy188III	TCNNGA	3 cut(s)	432, 613, 623
Hpy8I	GTNNAC	2 cut(s)	112, 898
Hpy99I	CGWCG	2 cut(s)	128, 131
HpyAV	CCTTC	4 cut(s)	150, 169, 634, 792
HpyCH4III	ACNGT	2 cut(s)	204, 647
HpyCH4IV	ACGT	3 cut(s)	586, 742, 814
HpyCH4V	TGCA	2 cut(s)	851, 883
HpyF10VI	GCNNNNNNNGC	3 cut(s)	508, 716, 721
HpyF3I	CTNAG	1 cut(s)	801
HpySE526I	ACGT	3 cut(s)	586, 742, 814
Hsp92II	CATG	4 cut(s)	109, 400, 428, 956
KroI	GCCGGC	1 cut(s)	715
KroNI	GCCGGC	1 cut(s)	717
Kzo9I	GATC	4 cut(s)	304, 493, 559, 632
LmnI	GCTCC	4 cut(s)	20, 86, 273, 368
LpnPI	CCDG	8 cut(s)	166, 350, 548, 729, 938, 972, 975, 988
LweI	GCATC	5 cut(s)	466, 498, 711, 814, 838
MabI	ACCWGGT	1 cut(s)	988
MaeI	CTAG	1 cut(s)	533
MaeII	ACGT	3 cut(s)	586, 742, 814
MaeIII	GTNAC	2 cut(s)	217, 695
MalI	GATC	4 cut(s)	306, 495, 561, 634
MboI	GATC	4 cut(s)	304, 493, 559, 632
MboII	GAAGA	8 cut(s)	338, 349, 451, 503, 664, 683, 872, 931
MflI	RGATCY	1 cut(s)	493
MluCI	AATT	4 cut(s)	280, 548, 675, 890
MlyI	GAGTC	2 cut(s)	80, 449
MmeI	TCCRAC	3 cut(s)	99, 126, 825
MnlI	CCTC	9 cut(s)	5, 145, 154, 160, 168, 340, 428, 856, 950
MroNI	GCCGGC	1 cut(s)	715
MroXI	GAANNNNTTC	1 cut(s)	675
MseI	TTAA	3 cut(s)	462, 576, 825
MslI	CAYNNNNRTG	1 cut(s)	485
MspI	CCGG	1 cut(s)	716
MspR9I	CCNGG	1 cut(s)	990
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	1 cut(s)	990
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	3 cut(s)	508, 716, 721
NaeI	GCCGGC	1 cut(s)	717
NdeII	GATC	4 cut(s)	304, 493, 559, 632
NgoMIV	GCCGGC	1 cut(s)	715
NlaIII	CATG	4 cut(s)	109, 400, 428, 956
NlaIV	GGNNCC	1 cut(s)	16
NmeAIII	GCCGAG	1 cut(s)	190
NmuCI	GTSAC	1 cut(s)	217
NspI	RCATGY	1 cut(s)	400
PciI	ACATGT	1 cut(s)	396
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 168
PctI	GAATGC	1 cut(s)	385
PdiI	GCCGGC	1 cut(s)	717
PdmI	GAANNNNTTC	1 cut(s)	675
PfeI	GAWTC	3 cut(s)	56, 98, 149
PflFI	GACNNNGTC	1 cut(s)	107
PkrI	GCNGC	1 cut(s)	211
PleI	GAGTC	2 cut(s)	79, 449
PpsI	GAGTC	2 cut(s)	79, 449
Ppu21I	YACGTR	1 cut(s)	587
PscI	ACATGT	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	988
PspEI	GGTNACC	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	988
PspN4I	GGNNCC	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	493
PsyI	GACNNNGTC	1 cut(s)	107
RsaI	GTAC	4 cut(s)	206, 589, 731, 957
RsaNI	GTAC	4 cut(s)	205, 588, 730, 956
RseI	CAYNNNNRTG	1 cut(s)	485
SalI	GTCGAC	2 cut(s)	110, 896
SaqAI	TTAA	3 cut(s)	462, 576, 825
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	4 cut(s)	304, 493, 559, 632
SchI	GAGTC	2 cut(s)	80, 449
ScrFI	CCNGG	1 cut(s)	990
SexAI	ACCWGGT	1 cut(s)	988
SfaNI	GCATC	5 cut(s)	466, 498, 711, 814, 838
SfcI	CTRYAG	2 cut(s)	628, 914
SmiMI	CAYNNNNRTG	1 cut(s)	485
SmlI	CTYRAG	1 cut(s)	905
SmoI	CTYRAG	1 cut(s)	905
SpeI	ACTAGT	1 cut(s)	532
Sse9I	AATT	4 cut(s)	280, 548, 675, 890
SsiI	CCGC	3 cut(s)	63, 84, 209
SspMI	CTAG	1 cut(s)	533
StyD4I	CCNGG	1 cut(s)	988
StyI	CCWWGG	2 cut(s)	213, 265
TaaI	ACNGT	2 cut(s)	204, 647
TaiI	ACGT	3 cut(s)	589, 745, 817
TaqI	TCGA	4 cut(s)	111, 199, 624, 897
TaqII	GACCGA	1 cut(s)	110
TasI	AATT	4 cut(s)	280, 548, 675, 890
TatI	WGTACW	1 cut(s)	729
TauI	GCSGC	1 cut(s)	212
TfiI	GAWTC	3 cut(s)	56, 98, 149
Tru1I	TTAA	3 cut(s)	462, 576, 825
Tru9I	TTAA	3 cut(s)	462, 576, 825
TscAI	CASTG	4 cut(s)	58, 328, 717, 876
TseFI	GTSAC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	6 cut(s)	248, 329, 541, 665, 753, 774
TspRI	CASTG	4 cut(s)	58, 328, 717, 876
Tth111I	GACNNNGTC	1 cut(s)	107
XapI	RAATTY	2 cut(s)	548, 675
XceI	RCATGY	1 cut(s)	400
XmiI	GTMKAC	2 cut(s)	111, 897
XmnI	GAANNNNTTC	1 cut(s)	675
XspI	CTAG	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.