Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0006520

Physical Location & Seq

Genomic Coordinates Reverse (-)

25043910 .. 25049971

Gene Structure 6062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1169000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAAGGGACGCCTAAACCGAGGGTTGGTTTCAGAGATTTGGTTCCAACTGGAAGCTATCTCTGCAAGCATTGATGAGGATTTCTCCCAGCTGGCAGCTTCAATTCCTTTCAAATCTAGGAACTTGGATCATTGGACAGAGAACTTGGCCCATTGGCTTTTGAGTTGGGATGAATGGGTAGGGTTGGATCGTCTGATGAAAAACACTGACGAGAATAAGAAGAAGCATGAGTACCTCAACCAGAAACAGAGAACAGACAAGAATGCAAAGCTAATACACACAACACATACTAAACTAAGAAGTTATCATGGTTGGGTTTATCATCTTTTAACATTTCTTTTGTTGTTGCCCAATCATGAAATTTGGATTTATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016573 GO:0016575 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0031248 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035267 GO:0035601 GO:0036211 GO:0040029 GO:0040034 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1902679 GO:1903506 GO:1903507 GO:1990188 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRG Tudor-knot

Protein Analysis

126

Amino Acids

14.98

Weight (kDa)

8.04

Isoelectric Point (pI)

24.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02740
fragaria_vesca	FvH4_2g33880 FvH4_2g33880 FvH4_2g33880 FvH4_2g33880 FvH4_2g33880
malus_domestica	MD08G1091800.v1.1 MD12G1169000.v1.1 MD15G1076200.v1.1
prunus_persica	Prupe.1G429500_v2.0.a1
pyrus_communis	pycom08g07450
rosa_chinensis	RchiOBHm_Chr6g0308521 RchiOBHm_Chr6g0308621
rosa_laevigata	RLG00000010635
rosa_multiflora	Rmu_sc0001161.1_g000019
rosa_roxburghii	Rroxscaffold_7G00160050
rosa_rugosa	Rorug06G0367500 Rorug06G0367600
rosa_samantha	Rh6AG477400 Rh6AG477700 Rh6AG478100 Rh6BG487700 Rh6CG492700 Rh6DG478900
rosa_wichuraiana	Rw6G041660 Rw6G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	135, 195
AcsI	RAATTY	1 cut(s)	360
AcyI	GRCGYC	1 cut(s)	10
AfaI	GTAC	1 cut(s)	233
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	2 cut(s)	102, 112
AluBI	AGCT	4 cut(s)	56, 91, 98, 271
AluI	AGCT	4 cut(s)	56, 91, 98, 271
AlwI	GGATC	2 cut(s)	135, 195
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	1 cut(s)	95
ApoI	RAATTY	1 cut(s)	360
AspS9I	GGNCC	1 cut(s)	148
BarI	GAAGNNNNNNTAC	2 cut(s)	215, 247
BbvI	GCAGC	1 cut(s)	107
BfaI	CTAG	1 cut(s)	117
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	1 cut(s)	44
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BsaHI	GRCGYC	1 cut(s)	10
BsaJI	CCNNGG	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	54
BseDI	CCNNGG	1 cut(s)	19
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseNI	ACTGG	1 cut(s)	54
BseXI	GCAGC	1 cut(s)	107
BseYI	CCCAGC	1 cut(s)	87
BshFI	GGCC	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	21
BsmI	GAATGC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	149
Bsp143I	GATC	2 cut(s)	127, 187
BspANI	GGCC	1 cut(s)	149
BspHI	TCATGA	1 cut(s)	355
BspLI	GGNNCC	1 cut(s)	44
BspPI	GGATC	2 cut(s)	135, 195
BsrI	ACTGG	1 cut(s)	54
BssECI	CCNNGG	1 cut(s)	19
BssMI	GATC	2 cut(s)	127, 187
BssNI	GRCGYC	1 cut(s)	10
BstACI	GRCGYC	1 cut(s)	10
BstC8I	GCNNGC	2 cut(s)	67, 93
BstDEI	CTNAG	1 cut(s)	296
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	2 cut(s)	130, 190
BstMBI	GATC	2 cut(s)	127, 187
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	107
BsuRI	GGCC	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	2 cut(s)	67, 93
CciI	TCATGA	1 cut(s)	355
Cfr13I	GGNCC	1 cut(s)	148
CseI	GACGC	1 cut(s)	18
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	3 cut(s)	227, 308, 356
CviJI	RGCY	6 cut(s)	56, 91, 98, 149, 157, 271
CviKI_1	RGCY	6 cut(s)	56, 91, 98, 149, 157, 271
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	1 cut(s)	296
DpnI	GATC	2 cut(s)	129, 189
DpnII	GATC	2 cut(s)	127, 187
FaeI	CATG	3 cut(s)	230, 311, 359
FaiI	YATR	4 cut(s)	228, 288, 309, 357
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	3 cut(s)	226, 307, 355
Fnu4HI	GCNGC	1 cut(s)	96
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	96
FspBI	CTAG	1 cut(s)	117
GluI	GCNGC	1 cut(s)	96
GsaI	CCCAGC	1 cut(s)	91
HaeIII	GGCC	1 cut(s)	149
HgaI	GACGC	1 cut(s)	18
Hin1I	GRCGYC	1 cut(s)	10
Hin1II	CATG	3 cut(s)	230, 311, 359
Hpy188I	TCNGA	2 cut(s)	34, 195
Hpy188III	TCNNGA	2 cut(s)	356, 375
HpyCH4V	TGCA	2 cut(s)	65, 266
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	1 cut(s)	296
Hsp92I	GRCGYC	1 cut(s)	10
Hsp92II	CATG	3 cut(s)	230, 311, 359
Kzo9I	GATC	2 cut(s)	127, 187
LpnPI	CCDG	4 cut(s)	35, 77, 101, 254
Lsp1109I	GCAGC	1 cut(s)	107
MaeI	CTAG	1 cut(s)	117
MalI	GATC	2 cut(s)	129, 189
MboI	GATC	2 cut(s)	127, 187
MboII	GAAGA	1 cut(s)	232
MluCI	AATT	2 cut(s)	102, 360
MmeI	TCCRAC	2 cut(s)	70, 165
MnlI	CCTC	3 cut(s)	14, 70, 245
MseI	TTAA	1 cut(s)	329
MspA1I	CMGCKG	1 cut(s)	91
Mva1269I	GAATGC	1 cut(s)	268
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeII	GATC	2 cut(s)	127, 187
NlaIII	CATG	3 cut(s)	230, 311, 359
NlaIV	GGNNCC	1 cut(s)	44
PagI	TCATGA	1 cut(s)	355
PcsI	WCGNNNNNNNCGW	1 cut(s)	16
PctI	GAATGC	1 cut(s)	268
PkrI	GCNGC	1 cut(s)	97
PspFI	CCCAGC	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	44
PspPI	GGNCC	1 cut(s)	148
PvuII	CAGCTG	1 cut(s)	91
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	1 cut(s)	96
Sau3AI	GATC	2 cut(s)	127, 187
Sau96I	GGNCC	1 cut(s)	148
SetI	ASST	5 cut(s)	58, 93, 100, 237, 273
Sse9I	AATT	2 cut(s)	102, 360
SspMI	CTAG	1 cut(s)	117
TasI	AATT	2 cut(s)	102, 360
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	1 cut(s)	95
TspDTI	ATGAA	4 cut(s)	17, 186, 212, 372
TspRI	CASTG	1 cut(s)	211
XapI	RAATTY	1 cut(s)	360
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.