Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0006520

Physical Location & Seq

Genomic Coordinates Forward (+)

65888973 .. 65897133

Gene Structure 8161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG477700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGAAGAGAGGCTACTCGAATCGTCCGTTTTTCAAAGGAGACAGAGGAAAGCTCATTCAGTTGAAGAAATTCTGAAAGGACTCTGTTGCTACTTTGACAAAGCATTGCCAGTTATCCTTCTTTACAAATATGATCGTCCGCAGTTTAAGAAAGCAATTGCAGATAATGTCTCTCCTTCATCTGTATACAGTGCTGAGCATCTATTACGCCTCTTTGTTAAACTGCCCGAGCTATTGGTTGAGGCTAACATTGAAGAGGAGACTTTGAAAGAGCTGTTACAAAGATTGGCAGACTTTCTCAAGTACCGACTTCAACTTTCTTCTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016573 GO:0016575 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0031248 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035267 GO:0035601 GO:0036211 GO:0040029 GO:0040034 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1902679 GO:1903506 GO:1903507 GO:1990188 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRG Tudor-knot

Protein Analysis

109

Amino Acids

12.83

Weight (kDa)

8.55

Isoelectric Point (pI)

62.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRG	PF05712	14 - 102	1.8e-23	MRG

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02740
fragaria_vesca	FvH4_2g33880 FvH4_2g33880 FvH4_2g33880 FvH4_2g33880 FvH4_2g33880
malus_domestica	MD08G1091800.v1.1 MD12G1169000.v1.1 MD15G1076200.v1.1
prunus_persica	Prupe.1G429500_v2.0.a1
pyrus_communis	pycom08g07450
rosa_chinensis	RchiOBHm_Chr6g0308521 RchiOBHm_Chr6g0308621
rosa_laevigata	RLG00000010635
rosa_multiflora	Rmu_sc0001161.1_g000019
rosa_roxburghii	Rroxscaffold_7G00160050
rosa_rugosa	Rorug06G0367500 Rorug06G0367600
rosa_samantha	Rh6AG477400 Rh6AG477700 Rh6AG478100 Rh6BG487700 Rh6CG492700 Rh6DG478900
rosa_wichuraiana	Rw6G041660 Rw6G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	186
AciI	CCGC	1 cut(s)	140
AcsI	RAATTY	1 cut(s)	69
AfaI	GTAC	1 cut(s)	305
AgsI	TTSAA	5 cut(s)	35, 65, 254, 268, 314
AluBI	AGCT	3 cut(s)	53, 232, 274
AluI	AGCT	3 cut(s)	53, 232, 274
Alw26I	GTCTC	3 cut(s)	34, 175, 254
Ama87I	CYCGRG	1 cut(s)	227
ApoI	RAATTY	1 cut(s)	69
Asp700I	GAANNNNTTC	1 cut(s)	69
AvaI	CYCGRG	1 cut(s)	227
BarI	GAAGNNNNNNTAC	1 cut(s)	29
BcoDI	GTCTC	3 cut(s)	34, 175, 254
BlpI	GCTNAGC	1 cut(s)	195
BmeT110I	CYCGRG	1 cut(s)	227
BmsI	GCATC	1 cut(s)	208
BplI	GAGNNNNNCTC	2 cut(s)	37, 69
Bpu1102I	GCTNAGC	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	284
Bse1I	ACTGG	1 cut(s)	110
Bse3DI	GCAATG	1 cut(s)	104
BseMI	GCAATG	1 cut(s)	104
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	1 cut(s)	110
BseRI	GAGGAG	1 cut(s)	272
BsiHKCI	CYCGRG	1 cut(s)	227
BsmAI	GTCTC	3 cut(s)	34, 175, 254
BsoBI	CYCGRG	1 cut(s)	227
Bsp143I	GATC	1 cut(s)	133
Bsp1720I	GCTNAGC	1 cut(s)	195
BspACI	CCGC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	187
BsrDI	GCAATG	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	110
BssMI	GATC	1 cut(s)	133
BssNAI	GTATAC	1 cut(s)	187
Bst1107I	GTATAC	1 cut(s)	187
Bst4CI	ACNGT	1 cut(s)	191
Bst6I	CTCTTC	1 cut(s)	249
BstDEI	CTNAG	1 cut(s)	195
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	3 cut(s)	34, 175, 254
BstMBI	GATC	1 cut(s)	133
BstZ17I	GTATAC	1 cut(s)	187
BtsIMutI	CAGTG	1 cut(s)	196
Csp6I	GTAC	1 cut(s)	304
CviJI	RGCY	5 cut(s)	13, 53, 232, 245, 274
CviKI_1	RGCY	5 cut(s)	13, 53, 232, 245, 274
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco88I	CYCGRG	1 cut(s)	227
FaiI	YATR	2 cut(s)	132, 187
FblI	GTMKAC	1 cut(s)	186
HinfI	GANTC	2 cut(s)	20, 81
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	1 cut(s)	75
Hpy8I	GTNNAC	1 cut(s)	187
HpyAV	CCTTC	2 cut(s)	128, 186
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4V	TGCA	1 cut(s)	161
HpyF3I	CTNAG	1 cut(s)	195
Kzo9I	GATC	1 cut(s)	133
LpnPI	CCDG	1 cut(s)	123
LweI	GCATC	1 cut(s)	208
MaeIII	GTNAC	1 cut(s)	276
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	4 cut(s)	17, 77, 266, 312
MfeI	CAATTG	1 cut(s)	156
MluCI	AATT	2 cut(s)	69, 156
MlyI	GAGTC	1 cut(s)	75
MnlI	CCTC	5 cut(s)	3, 39, 221, 235, 250
MroXI	GAANNNNTTC	1 cut(s)	69
MseI	TTAA	2 cut(s)	147, 219
MunI	CAATTG	1 cut(s)	156
NdeII	GATC	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	20
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
SaqAI	TTAA	2 cut(s)	147, 219
Sau3AI	GATC	1 cut(s)	133
SchI	GAGTC	1 cut(s)	75
SetI	ASST	3 cut(s)	55, 234, 276
SfaNI	GCATC	1 cut(s)	208
SgeI	CNNG	5 cut(s)	29, 122, 239, 241, 313
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	2 cut(s)	69, 156
SsiI	CCGC	1 cut(s)	140
TaaI	ACNGT	1 cut(s)	191
TaqI	TCGA	1 cut(s)	18
TasI	AATT	2 cut(s)	69, 156
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	2 cut(s)	147, 219
Tru9I	TTAA	2 cut(s)	147, 219
TscAI	CASTG	1 cut(s)	196
TspDTI	ATGAA	1 cut(s)	168
TspGWI	ACGGA	1 cut(s)	16
TspRI	CASTG	1 cut(s)	196
XapI	RAATTY	1 cut(s)	69
XmiI	GTMKAC	1 cut(s)	186
XmnI	GAANNNNTTC	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.