Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001161.1

Orthogroup ID

OG0006520

Physical Location & Seq

Genomic Coordinates Reverse (-)

54027 .. 56344

Gene Structure 2318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001161.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atgccacatgctttaaggaaacaactagttgatgattgtgaatcagttactcatctgggcaagcttgttaaacttccccggactccaaatgttgatgacatactgaagaagtatctagaatacagatcaaacagcgatgatttgaaagctcattcagttgaagaaattctgaaaggactatgttgctactttgacaaagcattgccagttatgcttctttacaaaaatgagcgtccgcagtatgagaaagcaattgcagataatgtctctccttcgtctgtatacggtgctgagcacctattacgcctctttgttaaactgcccgagttattggttgaggctaacattgaagaggagactttgaaagagctgctgcaaagattggccgactttctcaagttcctacataagaaccagagtgcattcttcctctcttcctaccatgtaccagaagatactgaaatcagcaccaacaaacaagatgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016573 GO:0016575 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0031248 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035267 GO:0035601 GO:0036211 GO:0040029 GO:0040034 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1902679 GO:1903506 GO:1903507 GO:1990188 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRG Tudor-knot

Protein Analysis

162

Amino Acids

18.7

Weight (kDa)

5.53

Isoelectric Point (pI)

50.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02740
fragaria_vesca	FvH4_2g33880 FvH4_2g33880 FvH4_2g33880 FvH4_2g33880 FvH4_2g33880
malus_domestica	MD08G1091800.v1.1 MD12G1169000.v1.1 MD15G1076200.v1.1
prunus_persica	Prupe.1G429500_v2.0.a1
pyrus_communis	pycom08g07450
rosa_chinensis	RchiOBHm_Chr6g0308521 RchiOBHm_Chr6g0308621
rosa_laevigata	RLG00000010635
rosa_multiflora	Rmu_sc0001161.1_g000019
rosa_roxburghii	Rroxscaffold_7G00160050
rosa_rugosa	Rorug06G0367500 Rorug06G0367600
rosa_samantha	Rh6AG477400 Rh6AG477700 Rh6AG478100 Rh6BG487700 Rh6CG492700 Rh6DG478900
rosa_wichuraiana	Rw6G041660 Rw6G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	282
AciI	CCGC	1 cut(s)	236
AcoI	YGGCCR	1 cut(s)	384
AcsI	RAATTY	1 cut(s)	165
AcuI	CTGAAG	1 cut(s)	125
AfaI	GTAC	1 cut(s)	447
AgsI	TTSAA	4 cut(s)	145, 161, 350, 364
AhlI	ACTAGT	1 cut(s)	25
AluBI	AGCT	3 cut(s)	64, 149, 370
AluI	AGCT	3 cut(s)	64, 149, 370
Alw21I	GWGCWC	1 cut(s)	297
Alw26I	GTCTC	2 cut(s)	271, 350
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	1 cut(s)	384
ApeKI	GCWGC	2 cut(s)	370, 373
ApoI	RAATTY	1 cut(s)	165
Asp700I	GAANNNNTTC	1 cut(s)	165
AsuC2I	CCSGG	1 cut(s)	79
AvaI	CYCGRG	1 cut(s)	323
Bbv12I	GWGCWC	1 cut(s)	297
BbvI	GCAGC	2 cut(s)	357, 360
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	2 cut(s)	271, 350
BcuI	ACTAGT	1 cut(s)	25
BfaI	CTAG	2 cut(s)	26, 116
BisI	GCNGC	2 cut(s)	371, 374
BlpI	GCTNAGC	1 cut(s)	291
BlsI	GCNGC	2 cut(s)	372, 375
Bme1390I	CCNGG	1 cut(s)	79
BmeT110I	CYCGRG	1 cut(s)	323
BmrFI	CCNGG	1 cut(s)	79
Bpu1102I	GCTNAGC	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	380
BpuMI	CCSGG	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	206
Bse3DI	GCAATG	1 cut(s)	200
BseDI	CCNNGG	1 cut(s)	77
BseMI	GCAATG	1 cut(s)	200
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	206
BseRI	GAGGAG	1 cut(s)	368
BseXI	GCAGC	2 cut(s)	357, 360
BshFI	GGCC	1 cut(s)	386
BsiHKAI	GWGCWC	1 cut(s)	297
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	79
BsmAI	GTCTC	2 cut(s)	271, 350
BsmI	GAATGC	1 cut(s)	422
BsnI	GGCC	1 cut(s)	386
BsoBI	CYCGRG	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp143I	GATC	1 cut(s)	125
Bsp1720I	GCTNAGC	1 cut(s)	291
BspACI	CCGC	1 cut(s)	236
BspANI	GGCC	1 cut(s)	386
BspCNI	CTCAG	1 cut(s)	283
BsrDI	GCAATG	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	1 cut(s)	125
BssNAI	GTATAC	1 cut(s)	283
Bst1107I	GTATAC	1 cut(s)	283
Bst4CI	ACNGT	1 cut(s)	287
Bst6I	CTCTTC	2 cut(s)	345, 439
BstC8I	GCNNGC	1 cut(s)	62
BstDEI	CTNAG	1 cut(s)	291
BstKTI	GATC	1 cut(s)	128
BstMAI	GTCTC	2 cut(s)	271, 350
BstMBI	GATC	1 cut(s)	125
BstMWI	GCNNNNNNNGC	1 cut(s)	211
BstNSI	RCATGY	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	77
BstV1I	GCAGC	2 cut(s)	357, 360
BstZ17I	GTATAC	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	386
BtgZI	GCGATG	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	62
CseI	GACGC	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	446
CviAII	CATG	2 cut(s)	8, 443
CviJI	RGCY	5 cut(s)	64, 149, 341, 370, 386
CviKI_1	RGCY	5 cut(s)	64, 149, 341, 370, 386
CviQI	GTAC	1 cut(s)	446
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	1 cut(s)	127
DpnII	GATC	1 cut(s)	125
EaeI	YGGCCR	1 cut(s)	384
Eam1104I	CTCTTC	2 cut(s)	345, 439
EarI	CTCTTC	2 cut(s)	345, 439
Eco57I	CTGAAG	1 cut(s)	125
Eco88I	CYCGRG	1 cut(s)	323
FaeI	CATG	2 cut(s)	11, 446
FaiI	YATR	8 cut(s)	9, 101, 181, 212, 243, 283, 408, 444
FatI	CATG	2 cut(s)	7, 442
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	2 cut(s)	371, 374
Fsp4HI	GCNGC	2 cut(s)	371, 374
FspBI	CTAG	2 cut(s)	26, 116
GluI	GCNGC	2 cut(s)	371, 374
HaeIII	GGCC	1 cut(s)	386
HapII	CCGG	1 cut(s)	79
HgaI	GACGC	1 cut(s)	221
Hin1II	CATG	2 cut(s)	11, 446
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	2 cut(s)	41, 82
HpaII	CCGG	1 cut(s)	79
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	1 cut(s)	283
HpyAV	CCTTC	1 cut(s)	282
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4V	TGCA	3 cut(s)	257, 376, 422
HpyF10VI	GCNNNNNNNGC	1 cut(s)	211
HpyF3I	CTNAG	1 cut(s)	291
Hsp92II	CATG	2 cut(s)	11, 446
Kzo9I	GATC	1 cut(s)	125
LpnPI	CCDG	5 cut(s)	41, 92, 219, 428, 462
Lsp1109I	GCAGC	2 cut(s)	357, 360
MaeI	CTAG	2 cut(s)	26, 116
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	1 cut(s)	127
MboI	GATC	1 cut(s)	125
MboII	GAAGA	6 cut(s)	118, 173, 362, 418, 426, 464
MfeI	CAATTG	1 cut(s)	252
MhlI	GDGCHC	1 cut(s)	297
MluCI	AATT	2 cut(s)	165, 252
MlyI	GAGTC	1 cut(s)	76
MnlI	CCTC	4 cut(s)	317, 331, 346, 440
MroXI	GAANNNNTTC	1 cut(s)	165
MseI	TTAA	3 cut(s)	14, 69, 315
MspI	CCGG	1 cut(s)	79
MspR9I	CCNGG	1 cut(s)	79
MunI	CAATTG	1 cut(s)	252
Mva1269I	GAATGC	1 cut(s)	422
MwoI	GCNNNNNNNGC	1 cut(s)	211
NciI	CCSGG	1 cut(s)	79
NdeII	GATC	1 cut(s)	125
NlaIII	CATG	2 cut(s)	11, 446
NspI	RCATGY	1 cut(s)	11
PctI	GAATGC	1 cut(s)	422
PdmI	GAANNNNTTC	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	372, 375
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
RsaI	GTAC	1 cut(s)	447
RsaNI	GTAC	1 cut(s)	446
SaqAI	TTAA	3 cut(s)	14, 69, 315
SatI	GCNGC	2 cut(s)	371, 374
Sau3AI	GATC	1 cut(s)	125
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	79
SduI	GDGCHC	1 cut(s)	297
SetI	ASST	4 cut(s)	66, 151, 300, 372
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
SpeI	ACTAGT	1 cut(s)	25
Sse9I	AATT	2 cut(s)	165, 252
SsiI	CCGC	1 cut(s)	236
SspMI	CTAG	2 cut(s)	26, 116
StyD4I	CCNGG	1 cut(s)	77
TaaI	ACNGT	1 cut(s)	287
TasI	AATT	2 cut(s)	165, 252
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	3 cut(s)	14, 69, 315
Tru9I	TTAA	3 cut(s)	14, 69, 315
TseI	GCWGC	2 cut(s)	370, 373
XapI	RAATTY	1 cut(s)	165
XbaI	TCTAGA	1 cut(s)	115
XceI	RCATGY	1 cut(s)	11
XmiI	GTMKAC	1 cut(s)	282
XmnI	GAANNNNTTC	1 cut(s)	165
XspI	CTAG	2 cut(s)	26, 116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.