Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006520

Physical Location & Seq

Genomic Coordinates Reverse (-)

25296289 .. 25300886

Gene Structure 4598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g33880.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGTCCAGTCAAGACTCAAGACTCAAGAAGTATAAGAGGAACAAGAAGACACAACTCACCCGAACACACAAAATGGGACATTCCAACACTCATGATCTTGATGATGTCATCACTGACCCTTCTGCTACTGAGTCAGACTCTTCTGCCACCAAGACCGATTCCGGAATCGAACATGGAAACGACGACGTCTCATCTCCGCCCTCTGATTCATGCCCCTTTTCCATTGGAGAGAAGGTCCTCGTTTATCACAACACTCGCATTTACGACGCCAAGGTGATCAAGACTCAATGCAAGAATGAATGGAGGATTTTCATTCATTACCTTGGCTGGAGCAAAACTTGGGATGAGTGGGTACGCCTGGACCGTTTACTGAAATACACTGAAGAGAATTTGGAGAAACAGAAGCTCATTATAAAGGAAGAGGGAACAGACAAGAATCCAAAGCCATCACAAACATCACAGACTAAACTAAAAAGTCATAATGGGAAAAGAGGCAGGAAGAGAAAGAACGACTCTGTTGTTAAGGGTGCTATACGCATGGACGAACTTGTGATTCAAATGCCACATCCTTTAAGGAAACAATTAGTTGATGATTGTGAATCAGTTACTCTTCTAGGCAAGCTTGTTAAACTTCCCCGCACTCCAAATGTTGATGACATACTGAAGAAGTATCTAGAATACAGATCAAAGACTGATGACTTGAAAGATCATCCAGTTGAAGAAATTGTGAAAGGACTATGTTGCTACTTTGACAATGCACTGCCAGTGATGCTTCTGTACAAAAATGAGCGTCCGCAGTATGAGAAAGCAATTGCAGATAATGTCTCTCCTTCATCTGTATATGGTGCTGAGCATCTATTACGCCTCTTTGTTAAACTGCCCAAGTTATTGCTTGATGCTAATATTGAAGAGGAGACTTTGGAAGAGCTGCTGCGAATATTAGTCGACTTTCTTGAGTTCCTACATACGAACCAGAGTGCATTCTTCCTCTCTTCCTACCATGTACCAGAAGATACTGAAATCAGTACCAACAAACAAGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016573 GO:0016575 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0031248 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035267 GO:0035601 GO:0036211 GO:0040029 GO:0040034 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1902679 GO:1903506 GO:1903507 GO:1990188 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRG Tudor-knot

Protein Analysis

349

Amino Acids

40.2

Weight (kDa)

6.65

Isoelectric Point (pI)

49.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MSL3_chromo-like	PF22732	73 - 136	1.1e-13	MSL3 chromodomain-like
Tudor-knot	PF11717	74 - 124	2.9e-08	RNA binding activity-knot of a chromodomain
MRG	PF05712	177 - 232	1.2e-12	MRG

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02740
fragaria_vesca	FvH4_2g33880 FvH4_2g33880 FvH4_2g33880 FvH4_2g33880 FvH4_2g33880
malus_domestica	MD08G1091800.v1.1 MD12G1169000.v1.1 MD15G1076200.v1.1
prunus_persica	Prupe.1G429500_v2.0.a1
pyrus_communis	pycom08g07450
rosa_chinensis	RchiOBHm_Chr6g0308521 RchiOBHm_Chr6g0308621
rosa_laevigata	RLG00000010635
rosa_multiflora	Rmu_sc0001161.1_g000019
rosa_roxburghii	Rroxscaffold_7G00160050
rosa_rugosa	Rorug06G0367500 Rorug06G0367600
rosa_samantha	Rh6AG477400 Rh6AG477700 Rh6AG478100 Rh6BG487700 Rh6CG492700 Rh6DG478900
rosa_wichuraiana	Rw6G041660 Rw6G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	413
AatII	GACGTC	1 cut(s)	189
AccI	GTMKAC	1 cut(s)	945
AccIII	TCCGGA	1 cut(s)	161
AciI	CCGC	3 cut(s)	197, 637, 794
AcsI	RAATTY	1 cut(s)	388
AcuI	CTGAAG	2 cut(s)	402, 683
AcyI	GRCGYC	2 cut(s)	186, 267
AfaI	GTAC	4 cut(s)	354, 779, 1005, 1027
AgsI	TTSAA	4 cut(s)	557, 703, 719, 908
AjnI	CCWGG	1 cut(s)	357
AluBI	AGCT	3 cut(s)	406, 622, 928
AluI	AGCT	3 cut(s)	406, 622, 928
Alw26I	GTCTC	3 cut(s)	193, 829, 908
Aor13HI	TCCGGA	1 cut(s)	161
ApeKI	GCWGC	2 cut(s)	928, 931
ApoI	RAATTY	1 cut(s)	388
AspS9I	GGNCC	2 cut(s)	235, 361
AsuHPI	GGTGA	2 cut(s)	49, 286
AvaII	GGWCC	2 cut(s)	235, 361
BbsI	GAAGAC	1 cut(s)	53
BbvI	GCAGC	2 cut(s)	915, 918
BccI	CCATC	1 cut(s)	454
BciT130I	CCWGG	1 cut(s)	359
BclI	TGATCA	1 cut(s)	276
BcoDI	GTCTC	3 cut(s)	193, 829, 908
BfaI	CTAG	2 cut(s)	614, 674
BisI	GCNGC	2 cut(s)	929, 932
BlpI	GCTNAGC	1 cut(s)	849
BlsI	GCNGC	2 cut(s)	930, 933
Bme1390I	CCNGG	1 cut(s)	359
Bme18I	GGWCC	2 cut(s)	235, 361
BmgT120I	GGNCC	2 cut(s)	235, 361
BmrFI	CCNGG	1 cut(s)	359
BmsI	GCATC	3 cut(s)	759, 862, 886
BpiI	GAAGAC	1 cut(s)	53
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BpmI	CTGGAG	1 cut(s)	349
Bpu1102I	GCTNAGC	1 cut(s)	849
BpuEI	CTTGAG	2 cut(s)	8, 974
BsaHI	GRCGYC	2 cut(s)	186, 267
BsaJI	CCNNGG	2 cut(s)	270, 322
BsaWI	WCCGGW	1 cut(s)	161
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bse1I	ACTGG	3 cut(s)	6, 713, 764
BseAI	TCCGGA	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	2 cut(s)	270, 322
BseGI	GGATG	3 cut(s)	349, 565, 709
BseMII	CTCAG	2 cut(s)	120, 840
BseNI	ACTGG	3 cut(s)	6, 713, 764
BseRI	GAGGAG	1 cut(s)	926
BseXI	GCAGC	2 cut(s)	915, 918
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	90
BsmAI	GTCTC	3 cut(s)	193, 829, 908
BsmBI	CGTCTC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	90
BsmI	GAATGC	1 cut(s)	980
Bsp13I	TCCGGA	1 cut(s)	161
Bsp1407I	TGTACA	1 cut(s)	777
Bsp143I	GATC	4 cut(s)	94, 276, 683, 706
Bsp1720I	GCTNAGC	1 cut(s)	849
BspACI	CCGC	3 cut(s)	197, 637, 794
BspCNI	CTCAG	2 cut(s)	121, 841
BspEI	TCCGGA	1 cut(s)	161
BspHI	TCATGA	1 cut(s)	91
BspQI	GCTCTTC	1 cut(s)	918
BsrGI	TGTACA	1 cut(s)	777
BsrI	ACTGG	3 cut(s)	6, 713, 764
BssECI	CCNNGG	2 cut(s)	270, 322
BssMI	GATC	4 cut(s)	94, 276, 683, 706
BssNI	GRCGYC	2 cut(s)	186, 267
BssT1I	CCWWGG	2 cut(s)	270, 322
Bst2UI	CCWGG	1 cut(s)	359
Bst4CI	ACNGT	1 cut(s)	365
Bst6I	CTCTTC	8 cut(s)	145, 378, 414, 494, 615, 903, 918, 997
BstACI	GRCGYC	2 cut(s)	186, 267
BstAUI	TGTACA	1 cut(s)	777
BstC8I	GCNNGC	1 cut(s)	620
BstDEI	CTNAG	2 cut(s)	129, 849
BstF5I	GGATG	3 cut(s)	349, 565, 709
BstKTI	GATC	4 cut(s)	97, 279, 686, 709
BstMAI	GTCTC	3 cut(s)	193, 829, 908
BstMBI	GATC	4 cut(s)	94, 276, 683, 706
BstMWI	GCNNNNNNNGC	1 cut(s)	769
BstNI	CCWGG	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	357
BstV1I	GCAGC	2 cut(s)	915, 918
BstV2I	GAAGAC	1 cut(s)	53
BtsCI	GGATG	3 cut(s)	349, 565, 709
BtsI	GCAGTG	1 cut(s)	758
BtsIMutI	CAGTG	4 cut(s)	111, 378, 758, 771
Cac8I	GCNNGC	1 cut(s)	620
CciI	TCATGA	1 cut(s)	91
Cfr13I	GGNCC	2 cut(s)	235, 361
CseI	GACGC	2 cut(s)	275, 779
Csp6I	GTAC	4 cut(s)	353, 778, 1004, 1026
CviAII	CATG	5 cut(s)	92, 173, 210, 538, 1001
CviJI	RGCY	5 cut(s)	327, 406, 445, 622, 928
CviKI_1	RGCY	5 cut(s)	327, 406, 445, 622, 928
CviQI	GTAC	4 cut(s)	353, 778, 1004, 1026
DdeI	CTNAG	2 cut(s)	129, 849
DpnI	GATC	4 cut(s)	96, 278, 685, 708
DpnII	GATC	4 cut(s)	94, 276, 683, 706
Eam1104I	CTCTTC	8 cut(s)	145, 378, 414, 494, 615, 903, 918, 997
EarI	CTCTTC	8 cut(s)	145, 378, 414, 494, 615, 903, 918, 997
EciI	GGCGGA	1 cut(s)	186
Eco130I	CCWWGG	2 cut(s)	270, 322
Eco47I	GGWCC	2 cut(s)	235, 361
Eco57I	CTGAAG	2 cut(s)	402, 683
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	357
EcoT14I	CCWWGG	2 cut(s)	270, 322
ErhI	CCWWGG	2 cut(s)	270, 322
Esp3I	CGTCTC	1 cut(s)	193
FaeI	CATG	5 cut(s)	95, 176, 213, 541, 1004
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	5 cut(s)	91, 172, 209, 537, 1000
FauI	CCCGC	1 cut(s)	644
FbaI	TGATCA	1 cut(s)	276
FblI	GTMKAC	1 cut(s)	945
Fnu4HI	GCNGC	2 cut(s)	929, 932
FokI	GGATG	3 cut(s)	356, 552, 696
Fsp4HI	GCNGC	2 cut(s)	929, 932
FspBI	CTAG	2 cut(s)	614, 674
GluI	GCNGC	2 cut(s)	929, 932
GsuI	CTGGAG	1 cut(s)	349
HapII	CCGG	1 cut(s)	162
HgaI	GACGC	2 cut(s)	275, 779
Hin1I	GRCGYC	2 cut(s)	186, 267
Hin1II	CATG	5 cut(s)	95, 176, 213, 541, 1004
HincII	GTYRAC	1 cut(s)	946
HindII	GTYRAC	1 cut(s)	946
HindIII	AAGCTT	1 cut(s)	620
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	2 cut(s)	49, 286
Hpy166II	GTNNAC	2 cut(s)	368, 946
Hpy188I	TCNGA	2 cut(s)	136, 205
Hpy188III	TCNNGA	9 cut(s)	11, 18, 25, 92, 98, 162, 280, 674, 953
Hpy8I	GTNNAC	2 cut(s)	368, 946
Hpy99I	CGWCG	3 cut(s)	185, 188, 269
HpyAV	CCTTC	3 cut(s)	129, 226, 840
HpyCH4III	ACNGT	1 cut(s)	365
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	4 cut(s)	291, 758, 815, 980
HpyF10VI	GCNNNNNNNGC	1 cut(s)	769
HpyF3I	CTNAG	2 cut(s)	129, 849
HpySE526I	ACGT	1 cut(s)	186
Hsp92I	GRCGYC	2 cut(s)	186, 267
Hsp92II	CATG	5 cut(s)	95, 176, 213, 541, 1004
Kpn2I	TCCGGA	1 cut(s)	161
Ksp22I	TGATCA	1 cut(s)	276
Kzo9I	GATC	4 cut(s)	94, 276, 683, 706
LguI	GCTCTTC	1 cut(s)	918
LmnI	GCTCC	1 cut(s)	330
Lsp1109I	GCAGC	2 cut(s)	915, 918
LweI	GCATC	3 cut(s)	759, 862, 886
MaeI	CTAG	2 cut(s)	614, 674
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	604
MalI	GATC	4 cut(s)	96, 278, 685, 708
MboI	GATC	4 cut(s)	94, 276, 683, 706
MfeI	CAATTG	1 cut(s)	810
MluCI	AATT	4 cut(s)	388, 581, 723, 810
MlyI	GAGTC	6 cut(s)	8, 15, 131, 140, 277, 506
MmeI	TCCRAC	1 cut(s)	108
MroI	TCCGGA	1 cut(s)	161
MseI	TTAA	4 cut(s)	522, 572, 627, 873
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	359
MunI	CAATTG	1 cut(s)	810
Mva1269I	GAATGC	1 cut(s)	980
MvaI	CCWGG	1 cut(s)	359
MwoI	GCNNNNNNNGC	1 cut(s)	769
NdeII	GATC	4 cut(s)	94, 276, 683, 706
NlaIII	CATG	5 cut(s)	95, 176, 213, 541, 1004
PagI	TCATGA	1 cut(s)	91
PciSI	GCTCTTC	1 cut(s)	918
PcsI	WCGNNNNNNNCGW	1 cut(s)	361
PctI	GAATGC	1 cut(s)	980
PfeI	GAWTC	6 cut(s)	158, 165, 206, 436, 553, 599
PflFI	GACNNNGTC	1 cut(s)	185
PkrI	GCNGC	2 cut(s)	930, 933
PleI	GAGTC	6 cut(s)	8, 15, 131, 139, 277, 506
PpsI	GAGTC	6 cut(s)	8, 15, 131, 139, 277, 506
PpuMI	RGGWCCY	1 cut(s)	235
PsiI	TTATAA	1 cut(s)	413
Psp5II	RGGWCCY	1 cut(s)	235
Psp6I	CCWGG	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	357
PspPI	GGNCC	2 cut(s)	235, 361
PspPPI	RGGWCCY	1 cut(s)	235
PsyI	GACNNNGTC	1 cut(s)	185
RsaI	GTAC	4 cut(s)	354, 779, 1005, 1027
RsaNI	GTAC	4 cut(s)	353, 778, 1004, 1026
SalI	GTCGAC	1 cut(s)	944
SapI	GCTCTTC	1 cut(s)	918
SaqAI	TTAA	4 cut(s)	522, 572, 627, 873
SatI	GCNGC	2 cut(s)	929, 932
Sau3AI	GATC	4 cut(s)	94, 276, 683, 706
Sau96I	GGNCC	2 cut(s)	235, 361
SchI	GAGTC	6 cut(s)	8, 15, 131, 140, 277, 506
ScrFI	CCNGG	1 cut(s)	359
SetI	ASST	7 cut(s)	189, 237, 276, 324, 408, 624, 930
SfaNI	GCATC	3 cut(s)	759, 862, 886
SinI	GGWCC	2 cut(s)	235, 361
SmlI	CTYRAG	3 cut(s)	16, 23, 953
SmoI	CTYRAG	3 cut(s)	16, 23, 953
Sse9I	AATT	4 cut(s)	388, 581, 723, 810
SsiI	CCGC	3 cut(s)	197, 637, 794
SspI	AATATT	2 cut(s)	904, 939
SspMI	CTAG	2 cut(s)	614, 674
StyD4I	CCNGG	1 cut(s)	357
StyI	CCWWGG	2 cut(s)	270, 322
TaaI	ACNGT	1 cut(s)	365
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	2 cut(s)	168, 945
TaqII	GACCGA	1 cut(s)	170
TasI	AATT	4 cut(s)	388, 581, 723, 810
TatI	WGTACW	1 cut(s)	777
TfiI	GAWTC	6 cut(s)	158, 165, 206, 436, 553, 599
Tru1I	TTAA	4 cut(s)	522, 572, 627, 873
Tru9I	TTAA	4 cut(s)	522, 572, 627, 873
TscAI	CASTG	4 cut(s)	118, 385, 765, 771
TseI	GCWGC	2 cut(s)	928, 931
TspDTI	ATGAA	5 cut(s)	198, 301, 305, 312, 822
TspRI	CASTG	4 cut(s)	118, 385, 765, 771
Tth111I	GACNNNGTC	1 cut(s)	185
VpaK11BI	GGWCC	2 cut(s)	235, 361
XapI	RAATTY	1 cut(s)	388
XbaI	TCTAGA	1 cut(s)	673
XmiI	GTMKAC	1 cut(s)	945
XspI	CTAG	2 cut(s)	614, 674
ZraI	GACGTC	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.