Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010723

Physical Location & Seq

Genomic Coordinates Reverse (-)

653604 .. 654457

Gene Structure 854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G02900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGACAAGTCCTTTACTCTGTTCTTAACTCTTACGATTCTCGTCGTCTTCATCATCTCTTCACCTCCGGTCCAAGCCGGCTTCGCCAACGACCTCGGTGGTGTAGCATGGGCTACGACTGGAGACAATGGTTCAGGCTGCCACGGTTCAATAGCAGAGTGTATCGGGGCGGAGGAAGAAGAAATGGACTCAGAGATCAATAGAAGAATATTGGCGACCACAAAATACATAAGCTATCAGTCTTTGAAACGGAACAGTGTGCCTTGTTCAAGAAGAGGTGCGTCTTATTACAATTGTCAGAACGGAGCTCAGGCTAATCCTTATAGTCGTGGTTGCAGCAAAATTGCTCGTTGCAGGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0005911 GO:0007154 GO:0007165 GO:0007267 GO:0007275 GO:0008150 GO:0009505 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009966 GO:0009987 GO:0010033 GO:0010469 GO:0010646 GO:0014070 GO:0019722 GO:0019932 GO:0022622 GO:0023051 GO:0023052 GO:0030054 GO:0030308 GO:0030312 GO:0030545 GO:0032501 GO:0032502 GO:0033993 GO:0035556 GO:0040008 GO:0042221 GO:0044464 GO:0045926 GO:0048018 GO:0048046 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051716 GO:0055044 GO:0065007 GO:0065009 GO:0071944 GO:0098772 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

120

Amino Acids

12.97

Weight (kDa)

8.25

Isoelectric Point (pI)

55.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RALF	PF05498	58 - 119	2.7e-28	Rapid ALkalinization Factor (RALF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02900
fragaria_vesca	FvH4_2g25351
malus_domestica	MD03G1284900.v1.1 MD11G1304400.v1.1 MD16G1024600.v1.1 MD16G1025200.v1.1 MD16G1025500.v1.1
prunus_persica	Prupe.8G258000_v2.0.a1
pyrus_communis	pycom03g22590 pycom11g26630
rosa_chinensis	RchiOBHm_Chr6g0293531
rosa_multiflora	Rmu_sc0006269.1_g000008 Rmu_sc0028622.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174110
rosa_rugosa	Rorug06G0236200
rosa_samantha	Rh6AG348900 Rh6BG356300 Rh6CG363000 Rh6DG349900
rosa_wichuraiana	Rw6G030360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	170
AgsI	TTSAA	3 cut(s)	150, 247, 270
AluBI	AGCT	2 cut(s)	234, 308
AluI	AGCT	2 cut(s)	234, 308
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	1 cut(s)	117
ApeKI	GCWGC	2 cut(s)	138, 336
AspS9I	GGNCC	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	54
AvaII	GGWCC	1 cut(s)	70
BanII	GRGCYC	1 cut(s)	310
BbsI	GAAGAC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	2 cut(s)	125, 348
BcoDI	GTCTC	1 cut(s)	117
BisI	GCNGC	2 cut(s)	139, 337
BlsI	GCNGC	2 cut(s)	140, 338
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	70
BpiI	GAAGAC	1 cut(s)	40
BpmI	CTGGAG	1 cut(s)	141
Bpu10I	CCTNAGC	1 cut(s)	309
BsaJI	CCNNGG	2 cut(s)	94, 142
BsaWI	WCCGGW	1 cut(s)	67
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	124
BseDI	CCNNGG	2 cut(s)	94, 142
BseMII	CTCAG	2 cut(s)	204, 323
BseNI	ACTGG	1 cut(s)	124
BseXI	GCAGC	2 cut(s)	125, 348
BsiHKAI	GWGCWC	1 cut(s)	310
BsiSI	CCGG	2 cut(s)	68, 78
BsmAI	GTCTC	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp143I	GATC	1 cut(s)	195
BspACI	CCGC	1 cut(s)	170
BspCNI	CTCAG	2 cut(s)	203, 322
BsrFI	RCCGGY	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	124
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	2 cut(s)	94, 142
BssMI	GATC	1 cut(s)	195
Bst4CI	ACNGT	2 cut(s)	146, 257
Bst6I	CTCTTC	2 cut(s)	64, 268
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	2 cut(s)	190, 309
BstDSI	CCRYGG	1 cut(s)	142
BstKTI	GATC	1 cut(s)	198
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	195
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstV1I	GCAGC	2 cut(s)	125, 348
BstV2I	GAAGAC	1 cut(s)	40
BtgI	CCRYGG	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	262
Cac8I	GCNNGC	1 cut(s)	79
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	70
CseI	GACGC	1 cut(s)	270
CviAII	CATG	1 cut(s)	108
CviJI	RGCY	7 cut(s)	77, 81, 113, 138, 234, 308, 314
CviKI_1	RGCY	7 cut(s)	77, 81, 113, 138, 234, 308, 314
DdeI	CTNAG	2 cut(s)	190, 309
DpnI	GATC	1 cut(s)	197
DpnII	GATC	1 cut(s)	195
Eam1104I	CTCTTC	2 cut(s)	64, 268
EarI	CTCTTC	2 cut(s)	64, 268
EciI	GGCGGA	1 cut(s)	185
Ecl136II	GAGCTC	1 cut(s)	308
Eco24I	GRGCYC	1 cut(s)	310
Eco47I	GGWCC	1 cut(s)	70
Eco53kI	GAGCTC	1 cut(s)	308
EcoICRI	GAGCTC	1 cut(s)	308
EcoT38I	GRGCYC	1 cut(s)	310
FaeI	CATG	1 cut(s)	111
FaiI	YATR	3 cut(s)	109, 230, 324
FatI	CATG	1 cut(s)	107
Fnu4HI	GCNGC	2 cut(s)	139, 337
FriOI	GRGCYC	1 cut(s)	310
Fsp4HI	GCNGC	2 cut(s)	139, 337
GluI	GCNGC	2 cut(s)	139, 337
GsuI	CTGGAG	1 cut(s)	141
HapII	CCGG	2 cut(s)	68, 78
HgaI	GACGC	1 cut(s)	270
Hin1II	CATG	1 cut(s)	111
HinfI	GANTC	2 cut(s)	37, 188
HpaII	CCGG	2 cut(s)	68, 78
HphI	GGTGA	1 cut(s)	54
Hpy188I	TCNGA	2 cut(s)	193, 300
Hpy188III	TCNNGA	1 cut(s)	270
Hpy99I	CGWCG	1 cut(s)	47
HpyCH4III	ACNGT	2 cut(s)	146, 257
HpyCH4V	TGCA	2 cut(s)	336, 354
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	2 cut(s)	190, 309
Hsp92II	CATG	1 cut(s)	111
KroI	GCCGGC	1 cut(s)	77
KroNI	GCCGGC	1 cut(s)	79
Kzo9I	GATC	1 cut(s)	195
LmnI	GCTCC	1 cut(s)	305
LpnPI	CCDG	6 cut(s)	81, 91, 105, 120, 296, 340
Lsp1109I	GCAGC	2 cut(s)	125, 348
MalI	GATC	1 cut(s)	197
MboI	GATC	1 cut(s)	195
MboII	GAAGA	6 cut(s)	40, 51, 188, 191, 216, 285
MfeI	CAATTG	1 cut(s)	292
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	2 cut(s)	292, 342
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	4 cut(s)	75, 104, 166, 269
MroNI	GCCGGC	1 cut(s)	77
MseI	TTAA	1 cut(s)	26
MspI	CCGG	2 cut(s)	68, 78
MunI	CAATTG	1 cut(s)	292
MwoI	GCNNNNNNNGC	1 cut(s)	83
NaeI	GCCGGC	1 cut(s)	79
NdeII	GATC	1 cut(s)	195
NgoMIV	GCCGGC	1 cut(s)	77
NlaIII	CATG	1 cut(s)	111
PdiI	GCCGGC	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	37
PkrI	GCNGC	2 cut(s)	140, 338
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
Psp124BI	GAGCTC	1 cut(s)	310
PspPI	GGNCC	1 cut(s)	70
SacI	GAGCTC	1 cut(s)	310
SaqAI	TTAA	1 cut(s)	26
SatI	GCNGC	2 cut(s)	139, 337
Sau3AI	GATC	1 cut(s)	195
Sau96I	GGNCC	1 cut(s)	70
SchI	GAGTC	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	310
SetI	ASST	5 cut(s)	67, 96, 236, 280, 310
SinI	GGWCC	1 cut(s)	70
Sse9I	AATT	2 cut(s)	292, 342
SsiI	CCGC	1 cut(s)	170
SspI	AATATT	1 cut(s)	210
SstI	GAGCTC	1 cut(s)	310
TaaI	ACNGT	2 cut(s)	146, 257
TasI	AATT	2 cut(s)	292, 342
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TscAI	CASTG	1 cut(s)	262
TseI	GCWGC	2 cut(s)	138, 336
TspDTI	ATGAA	1 cut(s)	40
TspGWI	ACGGA	2 cut(s)	265, 318
TspRI	CASTG	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.