Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010723

Physical Location & Seq

Genomic Coordinates Forward (+)

21937747 .. 21938560

Gene Structure 814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G258000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGCCAATTCCTCTTCCATTTTTCTCTTCGCCTTTTACATGTTCACGGCAACTCTGATCATCTCCACTTGGACCGTCCATGCAGGCAGCGATCACGGGTTGAGCTGGGTTCCAGGCAGAACCCGCTGCCAGGGTTCGATTGCGGAGTGCATGGCTGATGATGAATTTGACATGGACTCTCAGATCAACAGGCGGATACTGGCCACCTCACAATACATCAGCTATGGAGCTCTGCAGAGGAACACTGTGCCATGCTCTCGGAGAGGTGCGTCCTACTACAACTGCAAGCCAGGTGCAGAGAGTAACCCCTACAACCGTGGATGCAGTGCTATTGCTCGTTGCCGTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

117

Amino Acids

12.85

Weight (kDa)

8.61

Isoelectric Point (pI)

48.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02900
fragaria_vesca	FvH4_2g25351
malus_domestica	MD03G1284900.v1.1 MD11G1304400.v1.1 MD16G1024600.v1.1 MD16G1025200.v1.1 MD16G1025500.v1.1
prunus_persica	Prupe.8G258000_v2.0.a1
pyrus_communis	pycom03g22590 pycom11g26630
rosa_chinensis	RchiOBHm_Chr6g0293531
rosa_multiflora	Rmu_sc0006269.1_g000008 Rmu_sc0028622.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174110
rosa_rugosa	Rorug06G0236200
rosa_samantha	Rh6AG348900 Rh6BG356300 Rh6CG363000 Rh6DG349900
rosa_wichuraiana	Rw6G030360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	124, 143, 193
AcoI	YGGCCR	2 cut(s)	3, 201
AcsI	RAATTY	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	130
AflIII	ACRYGT	1 cut(s)	39
AjnI	CCWGG	3 cut(s)	112, 129, 289
AluBI	AGCT	4 cut(s)	105, 222, 230, 348
AluI	AGCT	4 cut(s)	105, 222, 230, 348
Alw21I	GWGCWC	1 cut(s)	232
AoxI	GGCC	2 cut(s)	3, 201
ApeKI	GCWGC	2 cut(s)	87, 126
ApoI	RAATTY	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	72
AvaII	GGWCC	1 cut(s)	72
BalI	TGGCCA	2 cut(s)	5, 203
BanII	GRGCYC	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	2 cut(s)	99, 113
BceAI	ACGGC	2 cut(s)	63, 327
BciT130I	CCWGG	3 cut(s)	114, 131, 291
BciVI	GTATCC	1 cut(s)	189
BclI	TGATCA	1 cut(s)	57
BfmI	CTRYAG	1 cut(s)	233
BfuI	GTATCC	1 cut(s)	189
BisI	GCNGC	2 cut(s)	88, 127
BlsI	GCNGC	2 cut(s)	89, 128
Bme1390I	CCNGG	3 cut(s)	114, 131, 291
Bme18I	GGWCC	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	3 cut(s)	114, 131, 291
BmsI	GCATC	1 cut(s)	311
BsaJI	CCNNGG	2 cut(s)	130, 316
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	204
BseBI	CCWGG	3 cut(s)	114, 131, 291
BseDI	CCNNGG	2 cut(s)	130, 316
BseGI	GGATG	1 cut(s)	326
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseMII	CTCAG	1 cut(s)	194
BseNI	ACTGG	1 cut(s)	204
BseXI	GCAGC	2 cut(s)	99, 113
BseYI	CCCAGC	1 cut(s)	105
BsgI	GTGCAG	1 cut(s)	315
BshFI	GGCC	2 cut(s)	5, 203
BsiHKAI	GWGCWC	1 cut(s)	232
BslI	CCNNNNNNNGG	1 cut(s)	130
BsnI	GGCC	2 cut(s)	5, 203
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp143I	GATC	3 cut(s)	57, 91, 183
BspACI	CCGC	3 cut(s)	124, 143, 193
BspANI	GGCC	2 cut(s)	5, 203
BspCNI	CTCAG	1 cut(s)	193
BspLI	GGNNCC	1 cut(s)	111
BspMAI	CTGCAG	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	2 cut(s)	130, 316
BssMI	GATC	3 cut(s)	57, 91, 183
Bst2UI	CCWGG	3 cut(s)	114, 131, 291
Bst4CI	ACNGT	3 cut(s)	76, 247, 317
Bst6I	CTCTTC	2 cut(s)	19, 32
BstC8I	GCNNGC	2 cut(s)	85, 287
BstDEI	CTNAG	1 cut(s)	180
BstDSI	CCRYGG	1 cut(s)	316
BstF5I	GGATG	1 cut(s)	326
BstKTI	GATC	3 cut(s)	60, 94, 186
BstMBI	GATC	3 cut(s)	57, 91, 183
BstMWI	GCNNNNNNNGC	1 cut(s)	123
BstNI	CCWGG	3 cut(s)	114, 131, 291
BstNSI	RCATGY	1 cut(s)	43
BstSCI	CCNGG	3 cut(s)	112, 129, 289
BstSFI	CTRYAG	1 cut(s)	233
BstV1I	GCAGC	2 cut(s)	99, 113
BsuI	GTATCC	1 cut(s)	189
BsuRI	GGCC	2 cut(s)	5, 203
BtgI	CCRYGG	1 cut(s)	316
BtsCI	GGATG	1 cut(s)	326
BtsI	GCAGTG	1 cut(s)	331
BtsIMutI	CAGTG	2 cut(s)	243, 331
Cac8I	GCNNGC	2 cut(s)	85, 287
Cfr13I	GGNCC	1 cut(s)	72
CseI	GACGC	1 cut(s)	258
CviAII	CATG	5 cut(s)	40, 80, 151, 172, 252
CviJI	RGCY	8 cut(s)	5, 105, 155, 203, 222, 230, 289, 348
CviKI_1	RGCY	8 cut(s)	5, 105, 155, 203, 222, 230, 289, 348
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	3 cut(s)	59, 93, 185
DpnII	GATC	3 cut(s)	57, 91, 183
EaeI	YGGCCR	2 cut(s)	3, 201
Eam1104I	CTCTTC	2 cut(s)	19, 32
EarI	CTCTTC	2 cut(s)	19, 32
EciI	GGCGGA	1 cut(s)	208
Ecl136II	GAGCTC	1 cut(s)	230
Eco24I	GRGCYC	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	72
Eco53kI	GAGCTC	1 cut(s)	230
EcoICRI	GAGCTC	1 cut(s)	230
EcoRII	CCWGG	3 cut(s)	112, 129, 289
EcoT38I	GRGCYC	1 cut(s)	232
FaeI	CATG	5 cut(s)	43, 83, 154, 175, 255
FaiI	YATR	6 cut(s)	41, 81, 152, 173, 225, 253
FatI	CATG	5 cut(s)	39, 79, 150, 171, 251
FauI	CCCGC	1 cut(s)	131
FbaI	TGATCA	1 cut(s)	57
Fnu4HI	GCNGC	2 cut(s)	88, 127
FokI	GGATG	1 cut(s)	333
FriOI	GRGCYC	1 cut(s)	232
Fsp4HI	GCNGC	2 cut(s)	88, 127
GluI	GCNGC	2 cut(s)	88, 127
GsaI	CCCAGC	1 cut(s)	109
HaeIII	GGCC	2 cut(s)	5, 203
HgaI	GACGC	1 cut(s)	258
Hin1II	CATG	5 cut(s)	43, 83, 154, 175, 255
HinfI	GANTC	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188I	TCNGA	3 cut(s)	57, 183, 261
Hpy8I	GTNNAC	1 cut(s)	45
HpyCH4III	ACNGT	3 cut(s)	76, 247, 317
HpyCH4V	TGCA	6 cut(s)	83, 150, 235, 285, 296, 324
HpyF10VI	GCNNNNNNNGC	1 cut(s)	123
HpyF3I	CTNAG	1 cut(s)	180
Hsp92II	CATG	5 cut(s)	43, 83, 154, 175, 255
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	3 cut(s)	57, 91, 183
LmnI	GCTCC	1 cut(s)	227
Lsp1109I	GCAGC	2 cut(s)	99, 113
LweI	GCATC	1 cut(s)	311
MaeIII	GTNAC	1 cut(s)	302
MalI	GATC	3 cut(s)	59, 93, 185
MboI	GATC	3 cut(s)	57, 91, 183
MboII	GAAGA	2 cut(s)	6, 19
MhlI	GDGCHC	1 cut(s)	232
MlsI	TGGCCA	2 cut(s)	5, 203
MluCI	AATT	2 cut(s)	7, 164
MluNI	TGGCCA	2 cut(s)	5, 203
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	4 cut(s)	22, 217, 231, 257
Mox20I	TGGCCA	2 cut(s)	5, 203
MscI	TGGCCA	2 cut(s)	5, 203
Msp20I	TGGCCA	2 cut(s)	5, 203
MspA1I	CMGCKG	1 cut(s)	126
MspR9I	CCNGG	3 cut(s)	114, 131, 291
MvaI	CCWGG	3 cut(s)	114, 131, 291
MwoI	GCNNNNNNNGC	1 cut(s)	123
NdeII	GATC	3 cut(s)	57, 91, 183
NlaIII	CATG	5 cut(s)	43, 83, 154, 175, 255
NlaIV	GGNNCC	1 cut(s)	111
NspI	RCATGY	1 cut(s)	43
PciI	ACATGT	1 cut(s)	39
PkrI	GCNGC	2 cut(s)	89, 128
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
PscI	ACATGT	1 cut(s)	39
Psp124BI	GAGCTC	1 cut(s)	232
Psp6I	CCWGG	3 cut(s)	112, 129, 289
PspFI	CCCAGC	1 cut(s)	105
PspGI	CCWGG	3 cut(s)	112, 129, 289
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	72
PstI	CTGCAG	1 cut(s)	237
SacI	GAGCTC	1 cut(s)	232
SatI	GCNGC	2 cut(s)	88, 127
Sau3AI	GATC	3 cut(s)	57, 91, 183
Sau96I	GGNCC	1 cut(s)	72
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	3 cut(s)	114, 131, 291
SduI	GDGCHC	1 cut(s)	232
SetI	ASST	7 cut(s)	107, 209, 224, 232, 268, 295, 350
SfaNI	GCATC	1 cut(s)	311
SfcI	CTRYAG	1 cut(s)	233
SinI	GGWCC	1 cut(s)	72
Sse9I	AATT	2 cut(s)	7, 164
SsiI	CCGC	3 cut(s)	124, 143, 193
SstI	GAGCTC	1 cut(s)	232
StyD4I	CCNGG	3 cut(s)	112, 129, 289
TaaI	ACNGT	3 cut(s)	76, 247, 317
TaqI	TCGA	1 cut(s)	137
TasI	AATT	2 cut(s)	7, 164
TscAI	CASTG	2 cut(s)	250, 331
TseI	GCWGC	2 cut(s)	87, 126
TspDTI	ATGAA	1 cut(s)	177
TspRI	CASTG	2 cut(s)	250, 331
VpaK11BI	GGWCC	1 cut(s)	72
XapI	RAATTY	1 cut(s)	164
XceI	RCATGY	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.