Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028622.1

Orthogroup ID

OG0010723

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1164

Gene Structure 1164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028622.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 290 bp

ccgtgatcatcgatgcaagcaatggcagcgatcacgggttgagcttcgttccggccaaggcccactgccagggttccgttgcagagtgcatggctgaagatgagtttgagatggactctgagatcaacaggcgtatcttggccaccacaaagtacatcagctatggagctctgcagaggaacactgttccatgctctcagaggggtgcttcctactacaattgcaagcccggcgcacaggcaaacccctacaaccgtggctgcagtgccatcactcgctgccgtagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

95

Amino Acids

10.32

Weight (kDa)

7.75

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02900
fragaria_vesca	FvH4_2g25351
malus_domestica	MD03G1284900.v1.1 MD11G1304400.v1.1 MD16G1024600.v1.1 MD16G1025200.v1.1 MD16G1025500.v1.1
prunus_persica	Prupe.8G258000_v2.0.a1
pyrus_communis	pycom03g22590 pycom11g26630
rosa_chinensis	RchiOBHm_Chr6g0293531
rosa_multiflora	Rmu_sc0006269.1_g000008 Rmu_sc0028622.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174110
rosa_rugosa	Rorug06G0236200
rosa_samantha	Rh6AG348900 Rh6BG356300 Rh6CG363000 Rh6DG349900
rosa_wichuraiana	Rw6G030360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	53, 140
AcuI	CTGAAG	1 cut(s)	116
AfaI	GTAC	1 cut(s)	154
AfiI	CCNNNNNNNGG	1 cut(s)	69
AjnI	CCWGG	1 cut(s)	68
AluBI	AGCT	3 cut(s)	44, 161, 169
AluI	AGCT	3 cut(s)	44, 161, 169
Alw21I	GWGCWC	1 cut(s)	171
AoxI	GGCC	3 cut(s)	53, 59, 140
ApeKI	GCWGC	3 cut(s)	26, 260, 278
AspLEI	GCGC	1 cut(s)	235
AspS9I	GGNCC	1 cut(s)	60
AsuC2I	CCSGG	1 cut(s)	230
BaeI	ACNNNNGTAYC	2 cut(s)	117, 150
BalI	TGGCCA	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	3 cut(s)	38, 247, 265
BccI	CCATC	2 cut(s)	105, 277
BceAI	ACGGC	1 cut(s)	266
BciT130I	CCWGG	1 cut(s)	70
BclI	TGATCA	1 cut(s)	5
BcnI	CCSGG	1 cut(s)	230
BfmI	CTRYAG	2 cut(s)	172, 261
BisI	GCNGC	3 cut(s)	27, 261, 279
BlsI	GCNGC	3 cut(s)	28, 262, 280
Bme1390I	CCNGG	2 cut(s)	70, 230
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	2 cut(s)	70, 230
BmsI	GCATC	1 cut(s)	3
BplI	GAGNNNNNCTC	2 cut(s)	100, 132
BpuMI	CCSGG	1 cut(s)	230
Bsa29I	ATCGAT	1 cut(s)	11
BsaJI	CCNNGG	3 cut(s)	56, 69, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse3DI	GCAATG	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	70
BseCI	ATCGAT	1 cut(s)	11
BseDI	CCNNGG	3 cut(s)	56, 69, 255
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseMI	GCAATG	1 cut(s)	27
BseMII	CTCAG	2 cut(s)	110, 211
BseXI	GCAGC	3 cut(s)	38, 247, 265
BshFI	GGCC	3 cut(s)	55, 61, 142
BshVI	ATCGAT	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	52, 230
BslI	CCNNNNNNNGG	1 cut(s)	69
BsnI	GGCC	3 cut(s)	55, 61, 142
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	3 cut(s)	5, 30, 122
BspANI	GGCC	3 cut(s)	55, 61, 142
BspCNI	CTCAG	2 cut(s)	111, 210
BspDI	ATCGAT	1 cut(s)	11
BspLI	GGNNCC	1 cut(s)	75
BspMAI	CTGCAG	2 cut(s)	176, 265
BsrDI	GCAATG	1 cut(s)	27
BssECI	CCNNGG	3 cut(s)	56, 69, 255
BssMI	GATC	3 cut(s)	5, 30, 122
BssT1I	CCWWGG	1 cut(s)	56
Bst2UI	CCWGG	1 cut(s)	70
Bst4CI	ACNGT	2 cut(s)	186, 256
BstC8I	GCNNGC	2 cut(s)	18, 226
BstDEI	CTNAG	2 cut(s)	119, 197
BstDSI	CCRYGG	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	235
BstKTI	GATC	3 cut(s)	8, 33, 125
BstMBI	GATC	3 cut(s)	5, 30, 122
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 230
BstNI	CCWGG	1 cut(s)	70
BstSCI	CCNGG	2 cut(s)	68, 228
BstSFI	CTRYAG	2 cut(s)	172, 261
BstV1I	GCAGC	3 cut(s)	38, 247, 265
Bsu15I	ATCGAT	1 cut(s)	11
BsuRI	GGCC	3 cut(s)	55, 61, 142
BsuTUI	ATCGAT	1 cut(s)	11
BtgI	CCRYGG	1 cut(s)	255
BtsI	GCAGTG	2 cut(s)	63, 270
BtsIMutI	CAGTG	3 cut(s)	63, 182, 270
Cac8I	GCNNGC	2 cut(s)	18, 226
CfoI	GCGC	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	60
ClaI	ATCGAT	1 cut(s)	11
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	2 cut(s)	90, 191
CviJI	RGCY	9 cut(s)	44, 55, 61, 94, 142, 161, 169, 228, 260
CviKI_1	RGCY	9 cut(s)	44, 55, 61, 94, 142, 161, 169, 228, 260
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	2 cut(s)	119, 197
DpnI	GATC	3 cut(s)	7, 32, 124
DpnII	GATC	3 cut(s)	5, 30, 122
EaeI	YGGCCR	2 cut(s)	53, 140
Ecl136II	GAGCTC	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	56
Eco24I	GRGCYC	1 cut(s)	171
Eco53kI	GAGCTC	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	116
EcoICRI	GAGCTC	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	56
EcoT38I	GRGCYC	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	56
FaeI	CATG	2 cut(s)	93, 194
FaiI	YATR	3 cut(s)	91, 164, 192
FatI	CATG	2 cut(s)	89, 190
FbaI	TGATCA	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	27, 261, 279
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	3 cut(s)	27, 261, 279
GlaI	GCGC	1 cut(s)	234
GluI	GCNGC	3 cut(s)	27, 261, 279
HaeIII	GGCC	3 cut(s)	55, 61, 142
HapII	CCGG	2 cut(s)	52, 230
HhaI	GCGC	1 cut(s)	235
Hin1II	CATG	2 cut(s)	93, 194
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HinfI	GANTC	1 cut(s)	115
HpaII	CCGG	2 cut(s)	52, 230
Hpy188I	TCNGA	2 cut(s)	120, 200
HpyCH4III	ACNGT	2 cut(s)	186, 256
HpyCH4V	TGCA	6 cut(s)	16, 82, 89, 174, 224, 263
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 230
HpyF3I	CTNAG	2 cut(s)	119, 197
Hsp92II	CATG	2 cut(s)	93, 194
HspAI	GCGC	1 cut(s)	233
Ksp22I	TGATCA	1 cut(s)	5
Kzo9I	GATC	3 cut(s)	5, 30, 122
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	6 cut(s)	55, 65, 82, 114, 223, 243
Lsp1109I	GCAGC	3 cut(s)	38, 247, 265
LweI	GCATC	1 cut(s)	3
MalI	GATC	3 cut(s)	7, 32, 124
MboI	GATC	3 cut(s)	5, 30, 122
MboII	GAAGA	1 cut(s)	109
MfeI	CAATTG	1 cut(s)	219
MhlI	GDGCHC	1 cut(s)	171
MlsI	TGGCCA	1 cut(s)	142
MluCI	AATT	1 cut(s)	219
MluNI	TGGCCA	1 cut(s)	142
MlyI	GAGTC	1 cut(s)	109
MnlI	CCTC	2 cut(s)	170, 194
Mox20I	TGGCCA	1 cut(s)	142
MscI	TGGCCA	1 cut(s)	142
Msp20I	TGGCCA	1 cut(s)	142
MspI	CCGG	2 cut(s)	52, 230
MspR9I	CCNGG	2 cut(s)	70, 230
MunI	CAATTG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	2 cut(s)	26, 230
NciI	CCSGG	1 cut(s)	230
NdeII	GATC	3 cut(s)	5, 30, 122
NlaIII	CATG	2 cut(s)	93, 194
NlaIV	GGNNCC	1 cut(s)	75
PkrI	GCNGC	3 cut(s)	28, 262, 280
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
Psp124BI	GAGCTC	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	60
PstI	CTGCAG	2 cut(s)	176, 265
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
SacI	GAGCTC	1 cut(s)	171
SatI	GCNGC	3 cut(s)	27, 261, 279
Sau3AI	GATC	3 cut(s)	5, 30, 122
Sau96I	GGNCC	1 cut(s)	60
SchI	GAGTC	1 cut(s)	109
ScrFI	CCNGG	2 cut(s)	70, 230
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	3 cut(s)	46, 163, 171
SfaNI	GCATC	1 cut(s)	3
SfcI	CTRYAG	2 cut(s)	172, 261
Sse9I	AATT	1 cut(s)	219
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	2 cut(s)	68, 228
StyI	CCWWGG	1 cut(s)	56
TaaI	ACNGT	2 cut(s)	186, 256
TaqI	TCGA	1 cut(s)	11
TasI	AATT	1 cut(s)	219
TatI	WGTACW	1 cut(s)	152
TscAI	CASTG	3 cut(s)	70, 189, 270
TseI	GCWGC	3 cut(s)	26, 260, 278
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	3 cut(s)	70, 189, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.