Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013394

Physical Location & Seq

Genomic Coordinates Forward (+)

701365 .. 703929

Gene Structure 2565 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G03030.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGAGGTTTCTTCTTTCTCCACTGTACCCAGATACTGTAACTCACGCTCCTTTGTTCCAGAATTGTCTCGTTTCAGGGGATTCAAAGTTCACTTATGGGACCAATCTCTTGTTCCTCTTCATTTCAGCATTCGAAAACGAAAGAACACCCCTCGTTATTTGATTTCTTGCAGTCAGAAGAAAGATGTCACTGTTGTTGATGGAAGTTGTATGGATGAGATCTATGATAAGTTGGCGGAACGTCTTGTCCCTACAGCAGCGGCAATGTTTAGCCCCAATCTTAAACGTTTGGTCGGTTTGGCTGGTCCTCCTGGTGCCGGGAAAAGTACAGTAGCAAATGAAGTTGTGCGTCGTGTAAATAAGCTATGGCCTCAGAAAGCTGCTTCTTTTGATGCTGAGGTTAATCCACCGGATGTTGCTATAGTACTTCCCATGGATGGTTTCCATTTGTATCGTTCGCAACTCGATGCTATGGAGGATCCCAAAGAAGCCCATGCGAGAAGAGGGGCTCCGTGGACTTTTGATCCTGCACTACTGCTTAACTGTTTAAAGAAGCTGAAAAACGAGGGCTCAGTTTATGTGCCATCATTTGATCATGGAGTTGGGGATCCAGTTGAAGATGATATCTTTGTTAGCCTCCAGCATAAAGTGGTAATTGTAGAAGGAAACTACATCTTGTTAGAAGAAGGGTCTTGGAAAGACATCTCAGATATGTTTGATGAGAAATGGTTCATCGATGTGAATCTCGATACAGCAATGCAACGTGTTGAAAACCGGCATATCTCAACTGGTAAACCCCCAGATGTTGCTAAATGGCGGGTGGATTATAATGACCGACCCAACGCAGAGCTGATAATAAAGTCAAAGACAAACGCTGATCTACTGATCAGATCTATGAACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_18 PRK

Protein Analysis

301

Amino Acids

34.06

Weight (kDa)

7.05

Isoelectric Point (pI)

40.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRK	PF00485	98 - 255	1.1e-07	Phosphoribulokinase / Uridine kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03030 AT1G03030
fragaria_vesca	FvH4_2g22511
malus_domestica	MD05G1205700.v1.1
prunus_persica	Prupe.8G232100_v2.0.a1
pyrus_communis	pycom05g19180
rosa_chinensis	RchiOBHm_Chr6g0289561
rosa_laevigata	RLG00000009408 RLG00000012293
rosa_multiflora	Rmu_sc0001527.1_g000059
rosa_roxburghii	Rroxscaffold_7G00177860
rosa_rugosa	Rorug06G0204400 Rorug06G0204500
rosa_samantha	Rh6AG316100 Rh6CG329100 Rh6DG314800
rosa_wichuraiana	Rw4G006720 Rw6G027260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	828
AccB1I	GGYRCC	1 cut(s)	314
AciI	CCGC	3 cut(s)	236, 260, 817
AclI	AACGTT	1 cut(s)	286
AclWI	GGATC	5 cut(s)	473, 486, 518, 602, 615
AfaI	GTAC	3 cut(s)	27, 328, 426
AfiI	CCNNNNNNNGG	2 cut(s)	317, 437
AflIII	ACRYGT	1 cut(s)	763
AgsI	TTSAA	3 cut(s)	85, 617, 770
AjnI	CCWGG	1 cut(s)	310
AjuI	GAANNNNNNNTTGG	2 cut(s)	96, 128
AloI	GAACNNNNNNTCC	4 cut(s)	72, 104, 231, 263
AluBI	AGCT	4 cut(s)	364, 380, 556, 850
AluI	AGCT	4 cut(s)	364, 380, 556, 850
Alw26I	GTCTC	1 cut(s)	72
AlwI	GGATC	5 cut(s)	473, 486, 518, 602, 615
AlwNI	CAGNNNCTG	1 cut(s)	36
AoxI	GGCC	1 cut(s)	368
ApeKI	GCWGC	2 cut(s)	257, 380
Asp700I	GAANNNNTTC	1 cut(s)	728
AspS9I	GGNCC	2 cut(s)	100, 305
AsuC2I	CCSGG	1 cut(s)	319
AsuII	TTCGAA	1 cut(s)	133
AvaII	GGWCC	2 cut(s)	100, 305
BamHI	GGATCC	2 cut(s)	478, 607
BanI	GGYRCC	1 cut(s)	314
BanII	GRGCYC	2 cut(s)	511, 572
BbvCI	CCTCAGC	1 cut(s)	396
BbvI	GCAGC	2 cut(s)	269, 367
BccI	CCATC	3 cut(s)	194, 431, 592
BciT130I	CCWGG	1 cut(s)	312
BclI	TGATCA	2 cut(s)	592, 885
BcnI	CCSGG	1 cut(s)	319
BcoDI	GTCTC	1 cut(s)	72
BfmI	CTRYAG	2 cut(s)	252, 420
BglII	AGATCT	2 cut(s)	219, 890
BisI	GCNGC	3 cut(s)	258, 261, 381
BlsI	GCNGC	3 cut(s)	259, 262, 382
BmcAI	AGTACT	1 cut(s)	426
Bme1390I	CCNGG	2 cut(s)	312, 319
Bme18I	GGWCC	2 cut(s)	100, 305
BmgT120I	GGNCC	2 cut(s)	100, 305
BmiI	GGNNCC	5 cut(s)	101, 316, 480, 510, 609
BmrFI	CCNGG	2 cut(s)	312, 319
BmsI	GCATC	2 cut(s)	382, 457
BpmI	CTGGAG	1 cut(s)	623
Bpu10I	CCTNAGC	1 cut(s)	396
Bpu14I	TTCGAA	1 cut(s)	133
BpuMI	CCSGG	1 cut(s)	319
Bsa29I	ATCGAT	1 cut(s)	735
BsaBI	GATNNNNATC	1 cut(s)	741
BsaJI	CCNNGG	2 cut(s)	432, 512
BsaWI	WCCGGW	1 cut(s)	409
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	2 cut(s)	317, 437
Bse118I	RCCGGY	1 cut(s)	774
Bse1I	ACTGG	2 cut(s)	611, 793
Bse3DI	GCAATG	2 cut(s)	270, 762
Bse8I	GATNNNNATC	1 cut(s)	741
BseBI	CCWGG	1 cut(s)	312
BseCI	ATCGAT	1 cut(s)	735
BseDI	CCNNGG	2 cut(s)	432, 512
BseGI	GGATG	3 cut(s)	220, 418, 442
BseJI	GATNNNNATC	1 cut(s)	741
BseLI	CCNNNNNNNGG	2 cut(s)	317, 437
BseMI	GCAATG	2 cut(s)	270, 762
BseMII	CTCAG	4 cut(s)	386, 387, 585, 720
BseNI	ACTGG	2 cut(s)	611, 793
BseXI	GCAGC	2 cut(s)	269, 367
BsgI	GTGCAG	1 cut(s)	513
BshFI	GGCC	1 cut(s)	370
BshNI	GGYRCC	1 cut(s)	314
BshVI	ATCGAT	1 cut(s)	735
BsiSI	CCGG	3 cut(s)	318, 410, 775
BslFI	GGGAC	2 cut(s)	113, 233
BslI	CCNNNNNNNGG	2 cut(s)	317, 437
BsmAI	GTCTC	1 cut(s)	72
BsmFI	GGGAC	2 cut(s)	113, 233
BsmI	GAATGC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	370
Bsp119I	TTCGAA	1 cut(s)	133
Bsp1286I	GDGCHC	2 cut(s)	511, 572
Bsp143I	GATC	8 cut(s)	219, 478, 523, 592, 607, 877, 885, 890
Bsp19I	CCATGG	1 cut(s)	432
BspACI	CCGC	3 cut(s)	236, 260, 817
BspANI	GGCC	1 cut(s)	370
BspCNI	CTCAG	4 cut(s)	385, 388, 584, 719
BspDI	ATCGAT	1 cut(s)	735
BspLI	GGNNCC	5 cut(s)	101, 316, 480, 510, 609
BspPI	GGATC	5 cut(s)	473, 486, 518, 602, 615
BspT104I	TTCGAA	1 cut(s)	133
BspT107I	GGYRCC	1 cut(s)	314
BsrDI	GCAATG	2 cut(s)	270, 762
BsrFI	RCCGGY	1 cut(s)	774
BsrI	ACTGG	2 cut(s)	611, 793
BssAI	RCCGGY	1 cut(s)	774
BssECI	CCNNGG	2 cut(s)	432, 512
BssMI	GATC	8 cut(s)	219, 478, 523, 592, 607, 877, 885, 890
BssT1I	CCWWGG	1 cut(s)	432
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	5 cut(s)	25, 38, 193, 331, 545
Bst6I	CTCTTC	2 cut(s)	123, 496
BstBI	TTCGAA	1 cut(s)	133
BstDEI	CTNAG	4 cut(s)	372, 396, 571, 706
BstDSI	CCRYGG	2 cut(s)	432, 512
BstF5I	GGATG	3 cut(s)	220, 418, 442
BstKTI	GATC	8 cut(s)	222, 481, 526, 595, 610, 880, 888, 893
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	8 cut(s)	219, 478, 523, 592, 607, 877, 885, 890
BstNI	CCWGG	1 cut(s)	312
BstSCI	CCNGG	2 cut(s)	310, 317
BstSFI	CTRYAG	2 cut(s)	252, 420
BstV1I	GCAGC	2 cut(s)	269, 367
BstX2I	RGATCY	4 cut(s)	219, 478, 607, 890
BstYI	RGATCY	4 cut(s)	219, 478, 607, 890
Bsu15I	ATCGAT	1 cut(s)	735
BsuRI	GGCC	1 cut(s)	370
BsuTUI	ATCGAT	1 cut(s)	735
BtgI	CCRYGG	2 cut(s)	432, 512
BtsCI	GGATG	3 cut(s)	220, 418, 442
BtsIMutI	CAGTG	2 cut(s)	21, 189
CaiI	CAGNNNCTG	1 cut(s)	36
Cfr10I	RCCGGY	1 cut(s)	774
Cfr13I	GGNCC	2 cut(s)	100, 305
ClaI	ATCGAT	1 cut(s)	735
CseI	GACGC	1 cut(s)	338
Csp6I	GTAC	3 cut(s)	26, 327, 425
CviAII	CATG	3 cut(s)	433, 494, 596
CviQI	GTAC	3 cut(s)	26, 327, 425
DdeI	CTNAG	4 cut(s)	372, 396, 571, 706
DpnI	GATC	8 cut(s)	221, 480, 525, 594, 609, 879, 887, 892
DpnII	GATC	8 cut(s)	219, 478, 523, 592, 607, 877, 885, 890
DraI	TTTAAA	1 cut(s)	549
Eam1104I	CTCTTC	2 cut(s)	123, 496
EarI	CTCTTC	2 cut(s)	123, 496
EciI	GGCGGA	1 cut(s)	251
Eco130I	CCWWGG	1 cut(s)	432
Eco24I	GRGCYC	2 cut(s)	511, 572
Eco32I	GATATC	1 cut(s)	625
Eco47I	GGWCC	2 cut(s)	100, 305
EcoRII	CCWGG	1 cut(s)	310
EcoRV	GATATC	1 cut(s)	625
EcoT14I	CCWWGG	1 cut(s)	432
EcoT38I	GRGCYC	2 cut(s)	511, 572
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	3 cut(s)	436, 497, 599
FaqI	GGGAC	2 cut(s)	113, 233
FatI	CATG	3 cut(s)	432, 493, 595
FauI	CCCGC	1 cut(s)	810
FbaI	TGATCA	2 cut(s)	592, 885
Fnu4HI	GCNGC	3 cut(s)	258, 261, 381
FokI	GGATG	3 cut(s)	227, 425, 449
FriOI	GRGCYC	2 cut(s)	511, 572
Fsp4HI	GCNGC	3 cut(s)	258, 261, 381
GluI	GCNGC	3 cut(s)	258, 261, 381
GsuI	CTGGAG	1 cut(s)	623
HaeIII	GGCC	1 cut(s)	370
HapII	CCGG	3 cut(s)	318, 410, 775
HgaI	GACGC	1 cut(s)	338
Hin1II	CATG	3 cut(s)	436, 497, 599
HinfI	GANTC	2 cut(s)	81, 742
HpaII	CCGG	3 cut(s)	318, 410, 775
Hpy166II	GTNNAC	3 cut(s)	91, 516, 794
Hpy188I	TCNGA	4 cut(s)	177, 375, 709, 890
Hpy188III	TCNNGA	2 cut(s)	59, 746
Hpy8I	GTNNAC	3 cut(s)	91, 516, 794
Hpy99I	CGWCG	1 cut(s)	354
HpyAV	CCTTC	2 cut(s)	656, 680
HpyCH4III	ACNGT	5 cut(s)	25, 38, 193, 331, 545
HpyCH4IV	ACGT	3 cut(s)	241, 286, 763
HpyCH4V	TGCA	3 cut(s)	171, 530, 760
HpyF3I	CTNAG	4 cut(s)	372, 396, 571, 706
HpySE526I	ACGT	3 cut(s)	241, 286, 763
Hsp92II	CATG	3 cut(s)	436, 497, 599
Ksp22I	TGATCA	2 cut(s)	592, 885
Kzo9I	GATC	8 cut(s)	219, 478, 523, 592, 607, 877, 885, 890
LmnI	GCTCC	2 cut(s)	53, 514
Lsp1109I	GCAGC	2 cut(s)	269, 367
LweI	GCATC	2 cut(s)	382, 457
MaeII	ACGT	3 cut(s)	241, 286, 763
MaeIII	GTNAC	2 cut(s)	38, 187
MalI	GATC	8 cut(s)	221, 480, 525, 594, 609, 879, 887, 892
MboI	GATC	8 cut(s)	219, 478, 523, 592, 607, 877, 885, 890
MboII	GAAGA	6 cut(s)	3, 110, 190, 513, 629, 695
MflI	RGATCY	4 cut(s)	219, 478, 607, 890
MhlI	GDGCHC	2 cut(s)	511, 572
MluCI	AATT	2 cut(s)	62, 654
MnlI	CCTC	9 cut(s)	126, 162, 318, 381, 391, 469, 497, 559, 647
MroXI	GAANNNNTTC	1 cut(s)	728
MseI	TTAA	4 cut(s)	282, 402, 540, 548
MslI	CAYNNNNRTG	1 cut(s)	737
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	3 cut(s)	318, 410, 775
MspR9I	CCNGG	2 cut(s)	312, 319
Mva1269I	GAATGC	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	312
NciI	CCSGG	1 cut(s)	319
NcoI	CCATGG	1 cut(s)	432
NdeII	GATC	8 cut(s)	219, 478, 523, 592, 607, 877, 885, 890
NlaIII	CATG	3 cut(s)	436, 497, 599
NlaIV	GGNNCC	5 cut(s)	101, 316, 480, 510, 609
NmuCI	GTSAC	1 cut(s)	187
NspV	TTCGAA	1 cut(s)	133
PctI	GAATGC	1 cut(s)	129
PdmI	GAANNNNTTC	1 cut(s)	728
PfeI	GAWTC	2 cut(s)	81, 742
PkrI	GCNGC	3 cut(s)	259, 262, 382
PsiI	TTATAA	1 cut(s)	828
Psp1406I	AACGTT	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	5 cut(s)	101, 316, 480, 510, 609
PspPI	GGNCC	2 cut(s)	100, 305
PstNI	CAGNNNCTG	1 cut(s)	36
PsuI	RGATCY	4 cut(s)	219, 478, 607, 890
RsaI	GTAC	3 cut(s)	27, 328, 426
RsaNI	GTAC	3 cut(s)	26, 327, 425
RseI	CAYNNNNRTG	1 cut(s)	737
SaqAI	TTAA	4 cut(s)	282, 402, 540, 548
SatI	GCNGC	3 cut(s)	258, 261, 381
Sau3AI	GATC	8 cut(s)	219, 478, 523, 592, 607, 877, 885, 890
Sau96I	GGNCC	2 cut(s)	100, 305
ScaI	AGTACT	1 cut(s)	426
ScrFI	CCNGG	2 cut(s)	312, 319
SduI	GDGCHC	2 cut(s)	511, 572
SetI	ASST	9 cut(s)	9, 244, 289, 366, 382, 402, 558, 766, 852
SfaNI	GCATC	2 cut(s)	382, 457
SfcI	CTRYAG	2 cut(s)	252, 420
SfuI	TTCGAA	1 cut(s)	133
SinI	GGWCC	2 cut(s)	100, 305
SmiMI	CAYNNNNRTG	1 cut(s)	737
Sse9I	AATT	2 cut(s)	62, 654
SsiI	CCGC	3 cut(s)	236, 260, 817
StyD4I	CCNGG	2 cut(s)	310, 317
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	5 cut(s)	25, 38, 193, 331, 545
TaiI	ACGT	3 cut(s)	244, 289, 766
TaqI	TCGA	4 cut(s)	133, 465, 735, 747
TaqII	GACCGA	1 cut(s)	849
TasI	AATT	2 cut(s)	62, 654
TatI	WGTACW	2 cut(s)	326, 424
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	2 cut(s)	81, 742
Tru1I	TTAA	4 cut(s)	282, 402, 540, 548
Tru9I	TTAA	4 cut(s)	282, 402, 540, 548
TscAI	CASTG	2 cut(s)	28, 196
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	2 cut(s)	257, 380
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	3 cut(s)	110, 354, 721
TspGWI	ACGGA	1 cut(s)	501
TspRI	CASTG	2 cut(s)	28, 196
VpaK11BI	GGWCC	2 cut(s)	100, 305
XmnI	GAANNNNTTC	1 cut(s)	728
ZrmI	AGTACT	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.